View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7439_high_12 (Length: 338)
Name: NF7439_high_12
Description: NF7439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7439_high_12 |
 | |
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| [»] scaffold0003 (1 HSPs) |
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| [»] scaffold0209 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 324; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 106760 - 106437
Alignment:
| Q |
1 |
gaacgaggcaggtgttagctttgagaaagtgcatcacaaaaagttattagaaataaagtttaacaaggttcaagttctcaattggtttctatgcttaggt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
106760 |
gaacgaggcaggtgttagctttgagaaagtgcatcacaaaaagttattagaaataaagtttaacaaggttcaagttctcaattggtttctatgcttaggt |
106661 |
T |
|
| Q |
101 |
tgcttaccatgtttcaaatttgtcaaaacaaagttgcaaattcctcaattcaaagtacaccaaacaactgaatgtgttcttaggaacctcattgctttgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
106660 |
tgcttaccatgtttcaaatttgtcaaaacaaagttgcaaattcctcaattcaaagtacaccaaacaactgaatgtgttcttaggaacctcattgctttgg |
106561 |
T |
|
| Q |
201 |
aacaatgtcattattcaaaccaacctttcatatgcaattatgtttctctaattgactttcttatcaacactcaagaagatgtggagttgttggttgataa |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
106560 |
aacaatgtcattattcaaaccaacctttcatatgcaattatgtttctctaattgactttcttatcaacactcaagaagatgtggagttgttggttgataa |
106461 |
T |
|
| Q |
301 |
ggaaatcattgttcatgaacttgg |
324 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
106460 |
ggaaatcattgttcatgaacttgg |
106437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 83 - 324
Target Start/End: Original strand, 143163 - 143404
Alignment:
| Q |
83 |
tggtttctatgcttaggttgcttaccatgtttcaaatttgtcaaaacaaagttgcaaattcctcaattcaaagtacaccaaacaactgaatgtgttctta |
182 |
Q |
| |
|
|||||| | ||||||||||| |||||||||| |||||||| || | ||||| ||||| || || || || ||| ||||| |||| ||||||||||||| |
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|
| T |
143163 |
tggtttttgtgcttaggttgtgtaccatgttttaaatttgtggaatctaagttacaaatcccgcatttgaatgtagaccaagcaacagaatgtgttctta |
143262 |
T |
|
| Q |
183 |
ggaacctcattgctttggaacaatgtcattattcaaaccaacctttcatatgcaattatgtttctctaattgactttcttatcaacactcaagaagatgt |
282 |
Q |
| |
|
||||||| || || || ||||||||||| |||||| | ||||||||||||||||| ||||||||| ||||||| | | | || | || || |||||||| |
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| T |
143263 |
ggaacctaatcgcatttgaacaatgtcactattcagagcaacctttcatatgcaactatgtttctttaattgattctttgattcatacacacgaagatgt |
143362 |
T |
|
| Q |
283 |
ggagttgttggttgataaggaaatcattgttcatgaacttgg |
324 |
Q |
| |
|
|||||||||||||| | ||||||||| ||||||||||| |
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| T |
143363 |
tgagttgttggttgacacagaaatcattagccatgaacttgg |
143404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 91
Target Start/End: Complemental strand, 113471 - 113412
Alignment:
| Q |
32 |
catcacaaaaagttattagaaataaagtttaacaaggttcaagttctcaattggtttcta |
91 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
113471 |
catcacaaaaacttgttagaaataaagtttaacaaggttcaaattctcaattggtttcta |
113412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 246
Target Start/End: Original strand, 161165 - 161247
Alignment:
| Q |
164 |
acaactgaatgtgttcttaggaacctcattgctttggaacaatgtcattattcaaaccaacctttcatatgcaattatgtttc |
246 |
Q |
| |
|
||||| ||||||||| | |||||||||||||| | ||||||||||||||| | | ||||||| ||||||||||||||||| |
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|
| T |
161165 |
acaacagaatgtgttttaaggaacctcattgccctagaacaatgtcattatcaagaacaaccttatatatgcaattatgtttc |
161247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 164 - 319
Target Start/End: Original strand, 152688 - 152843
Alignment:
| Q |
164 |
acaactgaatgtgttcttaggaacctcattgctttggaacaatgtcattattcaaaccaacctttcatatgcaattatgtttctctaattgactttctta |
263 |
Q |
| |
|
||||| ||||| ||||| |||||||||||||| | ||||||||||| ||| | | ||||||| ||||||||||||||||| || |||| | ||||| |
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|
| T |
152688 |
acaacagaatgcgttctaaggaacctcattgccctagaacaatgtcagtatcaagaacaaccttatatatgcaattatgtttcacttgttgattctctta |
152787 |
T |
|
| Q |
264 |
tcaacactcaagaagatgtggagttgttggttgataaggaaatcattgttcatgaa |
319 |
Q |
| |
|
| | || |||| ||||| || |||||||| || |||||| | ||||| |||||| |
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|
| T |
152788 |
tacatacacaagttgatgttgatttgttggtcgagaaggaagtgattgtgcatgaa |
152843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 264
Target Start/End: Original strand, 178454 - 178566
Alignment:
| Q |
152 |
aaagtacaccaaacaactgaatgtgttcttaggaacctcattgctttggaacaatgtcattattcaaaccaacctttcatatgcaattatgtttctctaa |
251 |
Q |
| |
|
|||||| |||| |||||||||||||||||||| ||||| || |||| || |||||||| || | || | |||| ||| ||||||||||||||| | | |
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|
| T |
178454 |
aaagtagaccatacaactgaatgtgttcttagaaacctaatcgcttacgagcaatgtcactaccctgacgagccttacatttgcaattatgtttctttga |
178553 |
T |
|
| Q |
252 |
ttgactttcttat |
264 |
Q |
| |
|
|||| | |||||| |
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|
| T |
178554 |
ttgattctcttat |
178566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 321
Target Start/End: Original strand, 607154 - 607298
Alignment:
| Q |
177 |
ttcttaggaacctcattgctttggaacaatgtcattattcaaaccaacctttcatatgcaattatgtttctctaattgactttcttatcaacactcaaga |
276 |
Q |
| |
|
|||||||||| || |||||||| || || ||||||||| || || | || | ||| ||||||||||||||| | |||| | |||||| |||| |||| |
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|
| T |
607154 |
ttcttaggaatctaattgcttttgagcagtgtcattatccagacaagccctacatttgcaattatgtttctttgcttgattctcttattgacaccaaaga |
607253 |
T |
|
| Q |
277 |
agatgtggagttgttggttgataaggaaatcattgttcatgaact |
321 |
Q |
| |
|
|||| |||||||||||||| || || || ||||| |||||||| |
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|
| T |
607254 |
tgatgcagagttgttggttgagaaagatatgattgtgcatgaact |
607298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 83 - 324
Target Start/End: Complemental strand, 45958499 - 45958258
Alignment:
| Q |
83 |
tggtttctatgcttaggttgcttaccatgtttcaaatttgtcaaaacaaagttgcaaattcctcaattcaaagtacaccaaacaactgaatgtgttctta |
182 |
Q |
| |
|
|||||| | ||||||||||| ||||| |||| |||||||| || | | ||| ||||| || || || |||||| ||||| |||| |||||||||||| |
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|
| T |
45958499 |
tggtttttgtgcttaggttgtgtaccaggttttaaatttgttgaatctacgttacaaatcccgcatttgaaagtagaccaagcaacataatgtgttctta |
45958400 |
T |
|
| Q |
183 |
ggaacctcattgctttggaacaatgtcattattcaaaccaacctttcatatgcaattatgtttctctaattgactttcttatcaacactcaagaagatgt |
282 |
Q |
| |
|
|||||||||| || | ||||||||||| ||||||||||||||||||||||| || ||||||||| ||||||| | | | || | || || ||| |||| |
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|
| T |
45958399 |
ggaacctcatcgcgtgtgaacaatgtcactattcaaaccaacctttcatatggaactatgtttctttaattgattctttcattcatacacatgaaaatgt |
45958300 |
T |
|
| Q |
283 |
ggagttgttggttgataaggaaatcattgttcatgaacttgg |
324 |
Q |
| |
|
|||||||||||||| | ||||||||| ||||||||||| |
|
|
| T |
45958299 |
tgagttgttggttgacacagaaatcattagccatgaacttgg |
45958258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 166 - 257
Target Start/End: Complemental strand, 27123337 - 27123246
Alignment:
| Q |
166 |
aactgaatgtgttcttaggaacctcattgctttggaacaatgtcattattcaaaccaacctttcatatgcaattatgtttctctaattgact |
257 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||||||||||||| ||| || |||||| |||||||||||| || |||||||||||||||| |
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|
| T |
27123337 |
aactgaatgtgttcttaggaacttcattgtattggaacaatgtcactatccataccaacttttcatatgcaactaggtttctctaattgact |
27123246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 92 - 210
Target Start/End: Original strand, 298556 - 298674
Alignment:
| Q |
92 |
tgcttaggttgcttaccatgtttcaaatttgtcaaaacaaagttgcaaattcctcaattcaaagtacaccaaacaactgaatgtgttcttaggaacctca |
191 |
Q |
| |
|
|||| |||||| |||||||||| |||||||| || | ||||| || || || || || |||||| ||||| ||||||||||||||||||||||||||| |
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|
| T |
298556 |
tgctgaggttgtgtaccatgttttcaatttgtcgaatctaagttacatatcccgcatttgaaagtagaccaagcaactgaatgtgttcttaggaacctca |
298655 |
T |
|
| Q |
192 |
ttgctttggaacaatgtca |
210 |
Q |
| |
|
| || || ||||||||||| |
|
|
| T |
298656 |
tcgcgtttgaacaatgtca |
298674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0209
Description:
Target: scaffold0209; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 210
Target Start/End: Complemental strand, 9746 - 9679
Alignment:
| Q |
143 |
cctcaattcaaagtacaccaaacaactgaatgtgttcttaggaacctcattgctttggaacaatgtca |
210 |
Q |
| |
|
|||||||| ||||| |||| ||||| ||||||||||||||||||||||| ||||| || |||||||| |
|
|
| T |
9746 |
cctcaattgaaagtggaccatacaaccgaatgtgttcttaggaacctcatggcttttgagcaatgtca |
9679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 210
Target Start/End: Complemental strand, 23200 - 23133
Alignment:
| Q |
143 |
cctcaattcaaagtacaccaaacaactgaatgtgttcttaggaacctcattgctttggaacaatgtca |
210 |
Q |
| |
|
|||||||| ||||| |||| ||||| ||||||||||||||||||||||| ||||| || |||||||| |
|
|
| T |
23200 |
cctcaattgaaagtggaccatacaaccgaatgtgttcttaggaacctcatggcttttgagcaatgtca |
23133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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