View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7439_high_18 (Length: 269)
Name: NF7439_high_18
Description: NF7439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7439_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 35429791 - 35429538
Alignment:
| Q |
1 |
tcaattaatgcatgcatattgtcccttctctactcacattatctcttgtcgacacattggacaagaatacggagtcgaacgattgatgcatccatagatc |
100 |
Q |
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| T |
35429791 |
tcaattaatgcatgcatattgtcccttctctactcacattatctcttgtcgacacattggacaagaatacggagtcgaacgattgatgcatccatagatc |
35429692 |
T |
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| Q |
101 |
aactgggcaatacactctttatgaaaaacatgagagcattttgtatgaaagagttttgactgcgattcgttgtgcaactcctccaaacaaattgaacatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35429691 |
aactgggcaatacactctttatgaaaaacatgagagcattttgtatgaaagagttttgactgcgattcgttgtgcaactcctccaaacaaattgaacatt |
35429592 |
T |
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| Q |
201 |
tatcgttggaatttgaaatagtttcatcaactgatttcaatgacaaacccacat |
254 |
Q |
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| T |
35429591 |
tatcgttggaatttgaaatagtttcatcaaccgatttcaatgacaaaccaacat |
35429538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 35420652 - 35420399
Alignment:
| Q |
1 |
tcaattaatgcatgcatattgtcccttctctactcacattatctcttgtcgacacattggacaagaatacggagtcgaacgattgatgcatccatagatc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
35420652 |
tcaattaatgcatgcatattgtcccttctctactcacattatctcttgtcgacacattggacaagaatacggagttgaacgattgatgcatccatagatc |
35420553 |
T |
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| Q |
101 |
aactgggcaatacactctttatgaaaaacatgagagcattttgtatgaaagagttttgactgcgattcgttgtgcaactcctccaaacaaattgaacatt |
200 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35420552 |
aactgggcaatacactctttatgaaaaatatgagagcattttgtatgaaagagttctgactgcgattcgttgtgcaactcctccaaacaaattgaacatt |
35420453 |
T |
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| Q |
201 |
tatcgttggaatttgaaatagtttcatcaactgatttcaatgacaaacccacat |
254 |
Q |
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| T |
35420452 |
catcggtggaatttgaaagagtttcaacatccgatttcgatgacaaacccacat |
35420399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 48 - 153
Target Start/End: Complemental strand, 35423604 - 35423499
Alignment:
| Q |
48 |
gtcgacacattggacaagaatacggagtcgaacgattgatgcatccatagatcaactgggcaatacactctttatgaaaaacatgagagcattttgtatg |
147 |
Q |
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||||||||| ||| |||||||| | || || |||| |||||||| || ||| ||| | ||||||||||| ||||||||||||||||||||||||||| |
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| T |
35423604 |
gtcgacacaatgggcaagaataagaagatgagcgatcgatgcatcgatcaatccacttgctaatacactcttcatgaaaaacatgagagcattttgtatg |
35423505 |
T |
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| Q |
148 |
aaagag |
153 |
Q |
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|||||| |
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| T |
35423504 |
aaagag |
35423499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 204
Target Start/End: Complemental strand, 42974125 - 42974029
Alignment:
| Q |
108 |
caatacactctttatgaaaaacatgagagcattttgtatgaaagagttttgactgcgattcgttgtgcaactcctccaaacaaattgaacatttatc |
204 |
Q |
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|||||||||||||||| |||||||| || |||||| ||| |||||| ||| |||||| | || ||||||||||||||||| ||||||||||| |
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| T |
42974125 |
caatacactctttatggaaaacatgcgaacattttctatagtagagttctgaatgcgatcctttacaaaactcctccaaacaaatcgaacatttatc |
42974029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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