View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7439_high_20 (Length: 255)
Name: NF7439_high_20
Description: NF7439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7439_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 22 - 241
Target Start/End: Complemental strand, 10589309 - 10589090
Alignment:
| Q |
22 |
aggaatagagtactaaattcttgcaaaagtataaaatgaaaaatctcctaaagaagcatgagatatatgaagttgtcacataaaagagtagagaaggccc |
121 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||| |
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| T |
10589309 |
aggaatagagtactaaattcttgcaaaagtataaaatgaaaaatctcctaaagaagcatgagatatatgaacttgtcacataaaagagtatagaagaccc |
10589210 |
T |
|
| Q |
122 |
gaaaatcgaaactgcaatctttgtgtagataatacgagagatacaaaatgactagttcaaaaatattagaacaatatttttctcgtgttataaatcttat |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
10589209 |
ataaatcgaaactgcaatctttgtgtagataatacgagagatacaaaatgactagttcaaaaatattagaacaatatttttctcgtgatataaatcttat |
10589110 |
T |
|
| Q |
222 |
caataagaagagcgtgtgtg |
241 |
Q |
| |
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|||||||||||||||||||| |
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| T |
10589109 |
caataagaagagcgtgtgtg |
10589090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 224
Target Start/End: Original strand, 29303568 - 29303703
Alignment:
| Q |
89 |
tgaagttgtcacataaaagagtagagaaggcccgaaaatcgaaactgcaatctttgtgtagataatacgagagatacaaaatgactagttcaaaaatatt |
188 |
Q |
| |
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||||||||||||||||| |||||||||| || | ||||| || ||||| ||| || ||||| ||||||| || || ||||| | ||||| ||| | | |
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| T |
29303568 |
tgaagttgtcacataaaggagtagagaaagctcagaaatcaaagctgcagtctctgcgtagagaatacgaaaggtatgaaatgtccagttctgaaacagt |
29303667 |
T |
|
| Q |
189 |
agaacaatatttttctcgtgttataaatcttatcaa |
224 |
Q |
| |
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|| ||||||||| ||||||||||||||||| |||| |
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| T |
29303668 |
ggatcaatattttactcgtgttataaatcttgtcaa |
29303703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 224
Target Start/End: Complemental strand, 12529474 - 12529339
Alignment:
| Q |
89 |
tgaagttgtcacataaaagagtagagaaggcccgaaaatcgaaactgcaatctttgtgtagataatacgagagatacaaaatgactagttcaaaaatatt |
188 |
Q |
| |
|
||||||||||||||||| |||||||||| || | ||||| || ||||| ||| || ||||| ||||||| || || ||||| | ||||| ||| | | |
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| T |
12529474 |
tgaagttgtcacataaaggagtagagaaagctcagaaatcaaagctgcagtctctgcgtagagaatacgaaaggtatgaaatgtccagttctgaaacagt |
12529375 |
T |
|
| Q |
189 |
agaacaatatttttctcgtgttataaatcttatcaa |
224 |
Q |
| |
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|| ||||||||| ||||||||||||||||| |||| |
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| T |
12529374 |
ggatcaatattttactcgtgttataaatcttgtcaa |
12529339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 224
Target Start/End: Original strand, 35841548 - 35841683
Alignment:
| Q |
89 |
tgaagttgtcacataaaagagtagagaaggcccgaaaatcgaaactgcaatctttgtgtagataatacgagagatacaaaatgactagttcaaaaatatt |
188 |
Q |
| |
|
||||||||||||||||| |||||||||| || | ||||| || ||||| ||| || ||||| ||||||| || || ||||| | ||||| ||| | | |
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| T |
35841548 |
tgaagttgtcacataaaggagtagagaaagctcagaaatcaaagctgcagtctctgcgtagagaatacgaaaggtatgaaatgtccagttctgaaacagt |
35841647 |
T |
|
| Q |
189 |
agaacaatatttttctcgtgttataaatcttatcaa |
224 |
Q |
| |
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|| ||||||||| ||||||||||||||||| |||| |
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|
| T |
35841648 |
ggatcaatattttactcgtgttataaatcttgtcaa |
35841683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 224
Target Start/End: Complemental strand, 27730687 - 27730552
Alignment:
| Q |
89 |
tgaagttgtcacataaaagagtagagaaggcccgaaaatcgaaactgcaatctttgtgtagataatacgagagatacaaaatgactagttcaaaaatatt |
188 |
Q |
| |
|
||||||||||||||||| |||||||||| || | ||||| || ||||| ||| || ||||| ||||||| || || ||||| | ||||| ||| | | |
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| T |
27730687 |
tgaagttgtcacataaaggagtagagaaagctcagaaatcaaagctgcagtctctgcgtagagaatacgaaaggtatgaaatgtccagttctgaaacagt |
27730588 |
T |
|
| Q |
189 |
agaacaatatttttctcgtgttataaatcttatcaa |
224 |
Q |
| |
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|| ||||||||| ||||||||||||||||| |||| |
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|
| T |
27730587 |
ggatcaatattttactcgtgttataaatcttgtcaa |
27730552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 224
Target Start/End: Original strand, 45965835 - 45965970
Alignment:
| Q |
89 |
tgaagttgtcacataaaagagtagagaaggcccgaaaatcgaaactgcaatctttgtgtagataatacgagagatacaaaatgactagttcaaaaatatt |
188 |
Q |
| |
|
||||||||||||||||| |||||||||| || | ||||| || ||||| ||| || ||||| ||||||| || || ||||| | ||||| ||| | | |
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| T |
45965835 |
tgaagttgtcacataaaggagtagagaaagctcagaaatcaaagctgcagtctctgcgtagagaatacgaaaggtatgaaatgtccagttctgaaacagt |
45965934 |
T |
|
| Q |
189 |
agaacaatatttttctcgtgttataaatcttatcaa |
224 |
Q |
| |
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|| ||||||||| ||||||||||||||||| |||| |
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| T |
45965935 |
ggatcaatattttactcgtgttataaatcttgtcaa |
45965970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 224
Target Start/End: Complemental strand, 29282728 - 29282593
Alignment:
| Q |
89 |
tgaagttgtcacataaaagagtagagaaggcccgaaaatcgaaactgcaatctttgtgtagataatacgagagatacaaaatgactagttcaaaaatatt |
188 |
Q |
| |
|
||||||||||||||||| |||||||||| || | ||||| || ||||| ||| || ||||| ||||||| || || ||||| | ||||| ||| | | |
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| T |
29282728 |
tgaagttgtcacataaaggagtagagaaagctcagaaatcaaagctgcagtctctgcgtagagaatacgaaaggtatgaaatgtccagttctgaaacagt |
29282629 |
T |
|
| Q |
189 |
agaacaatatttttctcgtgttataaatcttatcaa |
224 |
Q |
| |
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|| ||||||||| ||||||||||||||||| |||| |
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|
| T |
29282628 |
ggatcaatattttactcgtgttataaatcttgtcaa |
29282593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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