View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7439_high_3 (Length: 443)

Name: NF7439_high_3
Description: NF7439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7439_high_3
NF7439_high_3
[»] chr8 (4 HSPs)
chr8 (46-425)||(27054208-27054591)
chr8 (115-262)||(20762726-20762871)
chr8 (16-118)||(20762905-20763007)
chr8 (132-206)||(3424305-3424379)
[»] chr5 (5 HSPs)
chr5 (116-279)||(37247583-37247747)
chr5 (1-270)||(6887900-6888156)
chr5 (115-187)||(27582387-27582459)
chr5 (214-279)||(43299361-43299426)
chr5 (250-299)||(14434158-14434207)
[»] chr4 (7 HSPs)
chr4 (115-279)||(21315503-21315668)
chr4 (115-271)||(46824582-46824739)
chr4 (115-206)||(16962240-16962331)
chr4 (1-120)||(46824771-46824893)
chr4 (139-189)||(4848643-4848694)
chr4 (32-118)||(21315702-21315788)
chr4 (139-202)||(5198998-5199062)
[»] chr2 (2 HSPs)
chr2 (121-270)||(11445459-11445609)
chr2 (136-270)||(42237506-42237642)
[»] chr7 (2 HSPs)
chr7 (116-295)||(6218196-6218379)
chr7 (3-107)||(6218006-6218109)
[»] scaffold0006 (2 HSPs)
scaffold0006 (115-270)||(75529-75682)
scaffold0006 (6-118)||(75383-75495)
[»] chr1 (10 HSPs)
chr1 (116-197)||(29112532-29112613)
chr1 (115-245)||(24908991-24909112)
chr1 (168-298)||(43579048-43579179)
chr1 (165-270)||(24909123-24909229)
chr1 (2-86)||(43578832-43578916)
chr1 (1-106)||(24908851-24908955)
chr1 (54-118)||(29112441-29112505)
chr1 (193-258)||(32617528-32617594)
chr1 (217-270)||(29112616-29112669)
chr1 (117-151)||(43579012-43579046)
[»] chr6 (7 HSPs)
chr6 (1-118)||(1229342-1229459)
chr6 (136-274)||(2718757-2718898)
chr6 (119-167)||(1229260-1229308)
chr6 (141-206)||(6134223-6134289)
chr6 (131-204)||(2721825-2721899)
chr6 (137-246)||(3234526-3234633)
chr6 (174-246)||(9771917-9771990)
[»] chr3 (1 HSPs)
chr3 (192-298)||(29349954-29350060)
[»] scaffold0526 (1 HSPs)
scaffold0526 (142-270)||(3335-3465)
[»] scaffold0191 (1 HSPs)
scaffold0191 (2-37)||(30707-30742)


Alignment Details
Target: chr8 (Bit Score: 311; Significance: 1e-175; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 46 - 425
Target Start/End: Complemental strand, 27054591 - 27054208
Alignment:
Q  46 aggagatcgtgatgagtcaatagtatctcatgttcctttcatcgtctattttcgtgttgtatagtgttgtaatatataaaataatagttcaatttaagtt 145  Q
    ||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27054591 aggagattgtgatgagtcaatagtatctcatattcctttcatcatctattttcgtgttgtatagtgttgtaatatataaaataatagttcaatttaagtt 27054492  T
Q  146 attatacattatatgatagaataaatgatttaataatatttgtggattgttgtgattaattacaccgcgatgaccgcaatctataacgcaacatccgtaa 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  27054491 attatacattatatgatagaataaatgatttaataatatttgtggattgttgtgattaattacaccgcgatgaccgcaatctataacgcaacatctgtaa 27054392  T
Q  246 cgatcgaaatcgcgacaaccttaacatgaccgcggccgttatttaaaaccttgatacaaaacatatac----tataaattagtattgcatgcaacaacaa 341  Q
    ||| ||||||||||||||| ||||  |||||||| || ||||||||||| || |||||||||||||||    |||||||||||||||||| |||||||||    
T  27054391 cgaccgaaatcgcgacaactttaatgtgaccgcgaccattatttaaaactttaatacaaaacatatactatttataaattagtattgcatacaacaacaa 27054292  T
Q  342 agaaacccgcaacactctcctatatttttctctcaatctgatctaagtagaaaatattgaagaaatataaccaaacatgaataa 425  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27054291 agaaacccgcaacactcttctatatttttctctcaatctgatctaagtagaaaatattgaagaaatataaccaaacatgaataa 27054208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 115 - 262
Target Start/End: Complemental strand, 20762871 - 20762726
Alignment:
Q  115 taatatataaaataatagttcaatttaagttattatacattatatgatagaataaatgatttaataatatttgtggattgttgtgattaatt-acaccgc 213  Q
    ||||||||||||||||||||||||||   |||||||||| |||||||||||||||| |||| ||| ||||||||| |||||| ||||||||| |||||||    
T  20762871 taatatataaaataatagttcaattt---ttattatacactatatgatagaataaaagattaaatgatatttgtgcattgttctgattaattcacaccgc 20762775  T
Q  214 gatgaccgcaatctataacgcaacatccgtaacgatcgaaatcgcgaca 262  Q
    || ||||||||||  ||||||||||||||||||   |||||||||||||    
T  20762774 gacgaccgcaatcagtaacgcaacatccgtaacagccgaaatcgcgaca 20762726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 20763007 - 20762905
Alignment:
Q  16 caacaccgttcataagaaaaaatagacaataggagatcgtgatgagtcaatagtatctcatgttcctttcatcgtctattttcgtgttgtatagtgttgt 115  Q
    |||||||||||||||| ||||||||| |||  ||||  ||||||||   |||||||||||| ||| |||||||| |||||||| |||||||| |||||||    
T  20763007 caacaccgttcataaggaaaaatagataatgagagactgtgatgagctgatagtatctcatattcatttcatcgcctattttcatgttgtatggtgttgt 20762908  T
Q  116 aat 118  Q
    |||    
T  20762907 aat 20762905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 132 - 206
Target Start/End: Complemental strand, 3424379 - 3424305
Alignment:
Q  132 gttcaatttaagttattatacattatatgatagaataaatga-tttaataatatttgtggattgttgtgattaatt 206  Q
    ||||||||||||||||||||||||||||||||| |||||| | ||| |||||| ||||| ||||||||||||||||    
T  3424379 gttcaatttaagttattatacattatatgatagtataaataatttttataata-ttgtgcattgttgtgattaatt 3424305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 113; Significance: 5e-57; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 116 - 279
Target Start/End: Original strand, 37247583 - 37247747
Alignment:
Q  116 aatatataaaataatagttcaatttaagttattatacattatatgatagaataaatgatttaataatatttgtggattgttgtgattaatt-acaccgcg 214  Q
    |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  37247583 aatatataaaataatagttcaaattaagttattatacactatatgatagaataaatgatttaataatatttgtgcattgttgtgattaattcacaccgcg 37247682  T
Q  215 atgaccgcaatctataacgcaacatccgtaacgatcgaaatcgcgacaaccttaacatgaccgcg 279  Q
    |  ||| |||||| ||||||||||||||||||  |||||||||| ||||||||||| ||||||||    
T  37247683 acaaccacaatctgtaacgcaacatccgtaacactcgaaatcgcaacaaccttaacgtgaccgcg 37247747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 6888156 - 6887900
Alignment:
Q  1 cggaagcgaaaaacacaacaccgttcataagaaaaaatagacaataggagatcgtgatgagtcaatagtatctcatgttcctttcatcgtctattttcgt 100  Q
    |||||| |||||||||||||||||||||||| |||||| || |||  ||||  |||||||| ||||| |||||||| || || |||||| ||||||||||    
T  6888156 cggaagtgaaaaacacaacaccgttcataaggaaaaatggataatgagagactgtgatgagccaataatatctcatattgctctcatcgcctattttcgt 6888057  T
Q  101 gttgtatagtgttgtaatatataaaataatagttcaatttaagttattatacattatatgatagaataaatgatttaataatatttgtggattgttgtga 200  Q
     ||||||||||||||||| |            |  |||||||||||||||||| |||  ||||||||||||||||||| |||||||||| ||||||||||    
T  6888056 attgtatagtgttgtaatgt------------tgtaatttaagttattatacactat--gatagaataaatgatttaagaatatttgtgcattgttgtga 6887971  T
Q  201 ttaatt-acaccgcgatgaccgcaatctataacgcaacatccgtaacgatcgaaatcgcgacaaccttaac 270  Q
    | |||| ||||||||| || |||||||  ||| ||||||||||||||   |||||||||||||||||||||    
T  6887970 tcaattcacaccgcgaagatcgcaatcagtaaagcaacatccgtaacagccgaaatcgcgacaaccttaac 6887900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 115 - 187
Target Start/End: Complemental strand, 27582459 - 27582387
Alignment:
Q  115 taatatataaaataatagttcaatttaagttattatacattatatgatagaataaatgattt-aataatatttg 187  Q
    |||||||| |||||| |||| |||||| | |||||||| |||||||||||||||||| |||| |||||||||||    
T  27582459 taatatatgaaataaaagtttaattta-gatattataccttatatgatagaataaataatttgaataatatttg 27582387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 279
Target Start/End: Original strand, 43299361 - 43299426
Alignment:
Q  214 gatgaccgcaatctataacgcaacatccgtaacgatcgaaatcgcgacaaccttaacatgaccgcg 279  Q
    |||||||||||| | ||| |||||||| |||||||||||||||| ||||| ||||||  |||||||    
T  43299361 gatgaccgcaatatgtaatgcaacatctgtaacgatcgaaatcgagacaatcttaacgcgaccgcg 43299426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 299
Target Start/End: Complemental strand, 14434207 - 14434158
Alignment:
Q  250 cgaaatcgcgacaaccttaacatgaccgcggccgttatttaaaaccttga 299  Q
    ||||||||||||||| |||||  ||||||| |||||||||| ||||||||    
T  14434207 cgaaatcgcgacaactttaacgcgaccgcgaccgttatttacaaccttga 14434158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 2e-50; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 115 - 279
Target Start/End: Complemental strand, 21315668 - 21315503
Alignment:
Q  115 taatatataaaataatagttcaatttaagttattatacattatatgatagaataaatgatttaataatatttgtggattgttgtgattaatt-acaccgc 213  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||    
T  21315668 taatatataaaataatagttcaatttaagttattatacactatatgatagaataaatgattaaataatatttgtgcattgttgtgattaattcacaccgc 21315569  T
Q  214 gatgaccgcaatctataacgcaacatccgtaacgatcgaaatcgcgacaaccttaacatgaccgcg 279  Q
    || ||||| ||||| ||| ||||||||||||||    |||||||||| |||||||||  |||||||    
T  21315568 gacgaccgtaatctgtaatgcaacatccgtaacagctgaaatcgcgaaaaccttaacgcgaccgcg 21315503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 115 - 271
Target Start/End: Complemental strand, 46824739 - 46824582
Alignment:
Q  115 taatatataaaataatagttcaatttaagttattatacattatatgatagaataaatgatttaataatatttgtggattgttgtgattaa-ttacaccgc 213  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||    
T  46824739 taatatataaaataatagttcaatttaagttcttatacactatatgatagaataaatgattaaataatatttgtgcattgttgtgattaatttacaccgc 46824640  T
Q  214 gatgaccgcaatctataacgcaacatccgtaacgatc-gaaatcgcgacaaccttaaca 271  Q
    || || |||||||| ||| |||||||| ||||| ||| |||||||||| ||| ||||||    
T  46824639 gacgatcgcaatctgtaatgcaacatctgtaac-atctgaaatcgcgaaaacattaaca 46824582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 115 - 206
Target Start/End: Original strand, 16962240 - 16962331
Alignment:
Q  115 taatatataaaataatagttcaatttaagttattatacattatatgatagaataaatgatttaataatatttgtggattgttgtgattaatt 206  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  16962240 taatatataaaatgatagttcaatttaagtttttatacattatatgatagaataaatgatttaataatatttgtgcattgtcgtgattaatt 16962331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 46824893 - 46824771
Alignment:
Q  1 cggaagcgaaaaacacaacaccgttcataagaaaaaatagacaataggagatcgtgatga---gtcaatagtatctcatgttcctttcatcgtctatttt 97  Q
    ||||||||||||||||||||||||||||||||||||||| | |||  || |  |||||||   | |||||||||||||| || |||||||||  ||||||    
T  46824893 cggaagcgaaaaacacaacaccgttcataagaaaaaatatataatgagaaactgtgatgagccgccaatagtatctcatatttctttcatcgcttatttt 46824794  T
Q  98 cgtgttgtatagtgttgtaatat 120  Q
    | |||||||||||||||||||||    
T  46824793 catgttgtatagtgttgtaatat 46824771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 139 - 189
Target Start/End: Original strand, 4848643 - 4848694
Alignment:
Q  139 ttaagttattatacattatatgatagaataaatga-tttaataatatttgtg 189  Q
    |||||||||||||||||||||||||| |||||| | ||||||||||||||||    
T  4848643 ttaagttattatacattatatgatagtataaataattttaataatatttgtg 4848694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 118
Target Start/End: Complemental strand, 21315788 - 21315702
Alignment:
Q  32 aaaaaatagacaataggagatcgtgatgagtcaatagtatctcatgttcctttcatcgtctattttcgtgttgtatagtgttgtaat 118  Q
    |||||||||| |||  ||||  |||||||| |||||||||||||| || ||||||||| ||| |||| ||||| ||||| |||||||    
T  21315788 aaaaaatagataatgagagacagtgatgagccaatagtatctcatattgctttcatcgcctactttcatgttgcatagttttgtaat 21315702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 139 - 202
Target Start/End: Complemental strand, 5199062 - 5198998
Alignment:
Q  139 ttaagttattatacattatatgatagaataaatga-tttaataatatttgtggattgttgtgatt 202  Q
    |||||||||||||||||||||||||  |||||| | |||||||||||||||| | |||| |||||    
T  5199062 ttaagttattatacattatatgataatataaataattttaataatatttgtgcaatgttatgatt 5198998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 99; Significance: 1e-48; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 121 - 270
Target Start/End: Original strand, 11445459 - 11445609
Alignment:
Q  121 ataaaataatagttcaatttaagttattatacattatatgatagaataaatgatttaataatatttgtggattgttgtgattaatt-acaccgcgatgac 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||     
T  11445459 ataaaataatagttcaatttaagttattatacattatatgatagaataaatgatttaataatattcgtggattgttgtgattaattcacaccgcaatgaa 11445558  T
Q  220 cgcaatctataacgcaacatccgtaacgatcgaaatcgcgacaaccttaac 270  Q
    |||||||| | || |||||||| ||||   |||||||| ||||||||||||    
T  11445559 cgcaatctgtgacacaacatccataacagccgaaatcgtgacaaccttaac 11445609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 136 - 270
Target Start/End: Complemental strand, 42237642 - 42237506
Alignment:
Q  136 aatttaagttattatacattatatgatagaataaatga-tttaataatatttgtggattgttgtgattaatt-acaccgcgatgaccgcaatctataacg 233  Q
    |||||||||||||||||||| | |||||  |||||| | |||||||| ||||||| | ||||||| |||||| ||||||||| |||||  || | || ||    
T  42237642 aatttaagttattatacattgtttgataatataaataattttaataagatttgtgcaatgttgtggttaattcacaccgcgaagaccgttatttgtatcg 42237543  T
Q  234 caacatccgtaacgatcgaaatcgcgacaaccttaac 270  Q
    |||||||||| || | ||||||| ||| |||||||||    
T  42237542 caacatccgttacaaccgaaatcacgaaaaccttaac 42237506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 94; Significance: 1e-45; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 116 - 295
Target Start/End: Original strand, 6218196 - 6218379
Alignment:
Q  116 aatatataaaataatagttcaatttaagttattatacattatatgatagaataaatgatttaataatatttgtggattgttgtgattaatt-acaccgcg 214  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||   |||    
T  6218196 aatatataaaataatagtacaatttaagttattatacactatatgatagaataaatgatttaataatatttgtgcattgttgtgattaattcactttgcg 6218295  T
Q  215 atgaccgcaatctataacgcaacatccg---taacgatcgaaatcgcgacaaccttaacatgaccgcggccgttatttaaaacc 295  Q
    | |||| |||||| ||||||||||||||   ||||   |||||| ||||||||||||||  ||||||| || ||||||||||||    
T  6218296 acgaccacaatctgtaacgcaacatccgccgtaacagccgaaattgcgacaaccttaacgcgaccgcgaccattatttaaaacc 6218379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 3 - 107
Target Start/End: Original strand, 6218006 - 6218109
Alignment:
Q  3 gaagcgaaaaacacaacaccgttcataagaaaaaatagacaataggagatcgtgatgagtcaatagtatctcatgttcctttcatcgtctattttcgtgt 102  Q
    |||||||||||||||||| |||||||||| ||||||| | |||  ||||   | ||||| || ||||||||||| ||||||||| || ||||||||||||    
T  6218006 gaagcgaaaaacacaacaacgttcataaggaaaaatacataatgagagactctaatgagccagtagtatctcatattcctttca-cgcctattttcgtgt 6218104  T
Q  103 tgtat 107  Q
    |||||    
T  6218105 tgtat 6218109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 115 - 270
Target Start/End: Original strand, 75529 - 75682
Alignment:
Q  115 taatatataaaataatagttcaatttaagttattatacattatatgatagaataaatgatttaataatatttgtggattgttgtgattaatt-acaccgc 213  Q
    ||||||||||||||||||||||||||   |||||||||| |||||||||||||||| |||| ||| ||||||||| |||||| ||||||||| |||||||    
T  75529 taatatataaaataatagttcaattt---ttattatacactatatgatagaataaaagattaaatgatatttgtgcattgttctgattaattcacaccgc 75625  T
Q  214 gatgaccgcaatctataacgcaacatccgtaacgatcgaaatcgcgacaaccttaac 270  Q
    || ||||||||||  ||||||||||| |||||    ||||||||||||| |||||||    
T  75626 gacgaccgcaatcagtaacgcaacatacgtaatagccgaaatcgcgacagccttaac 75682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 6 - 118
Target Start/End: Original strand, 75383 - 75495
Alignment:
Q  6 gcgaaaaacacaacaccgttcataagaaaaaatagacaataggagatcgtgatgagtcaatagtatctcatgttcctttcatcgtctattttcgtgttgt 105  Q
    |||||||||||||||||||||||||| ||||||||| |||  ||||  ||||||||   |||||||||||| ||| |||||||| |||||||| ||||||    
T  75383 gcgaaaaacacaacaccgttcataaggaaaaatagataatgagagactgtgatgagctgatagtatctcatattcatttcatcgcctattttcatgttgt 75482  T
Q  106 atagtgttgtaat 118  Q
    |||| ||||||||    
T  75483 atagcgttgtaat 75495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 5e-29; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 116 - 197
Target Start/End: Original strand, 29112532 - 29112613
Alignment:
Q  116 aatatataaaataatagttcaatttaagttattatacattatatgatagaataaatgatttaataatatttgtggattgttg 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| || |||||||    
T  29112532 aatatataaaataatagttcaatttaagttattatacattatatgatggaataaatgatttaatgatatttatgcattgttg 29112613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 115 - 245
Target Start/End: Original strand, 24908991 - 24909112
Alignment:
Q  115 taatatataaaataatagttcaatttaagttattatacattatatgatagaataaatgatttaataatatttgtggattgttgtgattaatt-acaccgc 213  Q
    |||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  24908991 taatatataaaataatagttcaatttaagttattata----------tagaataaatgatttaataatatttgtgcattgttgtgattaattcacaccgc 24909080  T
Q  214 gatgaccgcaatctataacgcaacatccgtaa 245  Q
     | |||  |||||| |||||||| | ||||||    
T  24909081 aacgacttcaatctgtaacgcaatacccgtaa 24909112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 168 - 298
Target Start/End: Original strand, 43579048 - 43579179
Alignment:
Q  168 aaatgatttaataatatttgtggattgttgtgattaatt-acaccgcgatgaccgcaatctataacgcaacatccgtaacgatcgaaatcgcgacaacct 266  Q
    |||||||| ||||||||||||| |||||||||||||||| |||||| || ||||| ||| | |||||  | |||||||||   |||||| | ||||||||    
T  43579048 aaatgattaaataatatttgtgtattgttgtgattaattcacaccgtgacgaccgtaatatgtaacgttagatccgtaacagccgaaattgtgacaacct 43579147  T
Q  267 taacatgaccgcggccgttatttaaaaccttg 298  Q
    || |  ||||||| ||||||||||||||||||    
T  43579148 tagcccgaccgcgaccgttatttaaaaccttg 43579179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 165 - 270
Target Start/End: Original strand, 24909123 - 24909229
Alignment:
Q  165 aataaatgatttaataatatttgtggattgttgtgattaatt-acaccgcgatgaccgcaatctataacgcaacatccgtaacgatcgaaatcgcgacaa 263  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||||| | |||  |||||| |||||||| | ||||||  |   ||||||||||||    
T  24909123 aataaatgatttaataatatttgtgcattgttgtgattaattcacaccgcaacgacttcaatctgtaacgcaatacccgtaataactaaaatcgcgacaa 24909222  T
Q  264 ccttaac 270  Q
    |||||||    
T  24909223 ccttaac 24909229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 2 - 86
Target Start/End: Original strand, 43578832 - 43578916
Alignment:
Q  2 ggaagcgaaaaacacaacaccgttcataagaaaaaatagacaataggagatcgtgatgagtcaatagtatctcatgttcctttca 86  Q
    ||||||||||||||||||||  |||||||| ||||||||| |||  ||||  |||||||| |||||||||||||| || ||||||    
T  43578832 ggaagcgaaaaacacaacacaattcataaggaaaaatagataatgcgagagtgtgatgagccaatagtatctcatattactttca 43578916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 24908851 - 24908955
Alignment:
Q  1 cggaagcgaaaaacacaacaccgttcataagaaaaaatagacaataggagatcgtgatgagtcaatagtatctcatgttcctttcatcgtctattttcgt 100  Q
    ||||| |||||||||||||| | |||||||| |||| |||| |||  ||||| |||||||  || ||||||||||| |||||||||||| ||||| | ||    
T  24908851 cggaaacgaaaaacacaacaacattcataaggaaaa-tagataatgagagattgtgatgaaccagtagtatctcatattcctttcatcgcctattgtagt 24908949  T
Q  101 gttgta 106  Q
    ||||||    
T  24908950 gttgta 24908955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 54 - 118
Target Start/End: Original strand, 29112441 - 29112505
Alignment:
Q  54 gtgatgagtcaatagtatctcatgttcctttcatcgtctattttcgtgttgtatagtgttgtaat 118  Q
    |||||||| ||||| |||||||| |||||||||| ||||||||||||||| | || |||||||||    
T  29112441 gtgatgagccaataatatctcatattcctttcattgtctattttcgtgttatgtaatgttgtaat 29112505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 193 - 258
Target Start/End: Complemental strand, 32617594 - 32617528
Alignment:
Q  193 tgttgtgattaatt-acaccgcgatgaccgcaatctataacgcaacatccgtaacgatcgaaatcgc 258  Q
    |||||||||||||| |||||||||  ||||||||| ||| ||||||| |||||||| ||||||||||    
T  32617594 tgttgtgattaatttacaccgcgacaaccgcaatccatatcgcaacacccgtaacggtcgaaatcgc 32617528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 217 - 270
Target Start/End: Original strand, 29112616 - 29112669
Alignment:
Q  217 gaccgcaatctataacgcaacatccgtaacgatcgaaatcgcgacaaccttaac 270  Q
    ||||||||||| ||||||||||||||||||   | |||||||||||||||||||    
T  29112616 gaccgcaatctctaacgcaacatccgtaacagccaaaatcgcgacaaccttaac 29112669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 151
Target Start/End: Original strand, 43579012 - 43579046
Alignment:
Q  117 atatataaaataatagttcaatttaagttattata 151  Q
    ||||||| |||||||||||||||||||||||||||    
T  43579012 atatatataataatagttcaatttaagttattata 43579046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 1229459 - 1229342
Alignment:
Q  1 cggaagcgaaaaacacaacaccgttcataagaaaaaatagacaataggagatcgtgatgagtcaatagtatctcatgttcctttcatcgtctattttcgt 100  Q
    |||||||||||| ||||||||||||| |||| ||||||||| ||   ||||| |||||||||||||||||||||||  | ||||||||| |||||||  |    
T  1229459 cggaagcgaaaagcacaacaccgttcctaaggaaaaatagataacgagagattgtgatgagtcaatagtatctcataatactttcatcgcctattttaat 1229360  T
Q  101 gttgtatagtgttgtaat 118  Q
    ||||||||||||||||||    
T  1229359 gttgtatagtgttgtaat 1229342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 136 - 274
Target Start/End: Original strand, 2718757 - 2718898
Alignment:
Q  136 aatttaagttattatacattatatgatagaataaatga-tttaataatatttgtggattgttgtgattaatt-acacc-gcgatgaccgcaatctataac 232  Q
    |||| |||||||||||||||||||||||  |||||| | |||||||||||||||| |  ||||||||||||| |||||  ||||||||  ||||| ||||    
T  2718757 aattgaagttattatacattatatgataatataaataattttaataatatttgtgaaaggttgtgattaattcacaccaacgatgaccataatctctaac 2718856  T
Q  233 gcaacatccgtaacgatcgaaatcgcgacaaccttaacatga 274  Q
    ||||||| | |||   | ||||||||||||||||||||||||    
T  2718857 gcaacattcataatagttgaaatcgcgacaaccttaacatga 2718898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 119 - 167
Target Start/End: Complemental strand, 1229308 - 1229260
Alignment:
Q  119 atataaaataatagttcaatttaagttattatacattatatgatagaat 167  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  1229308 atataaaataatagttcaatttaagttattatatattatatgatagaat 1229260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 141 - 206
Target Start/End: Complemental strand, 6134289 - 6134223
Alignment:
Q  141 aagttattatacattatatgatagaataaatga-tttaataatatttgtggattgttgtgattaatt 206  Q
    ||||||||||||||||| |||||| |||||||| |||||||| ||||||| | ||||||||||||||    
T  6134289 aagttattatacattatttgatagtataaatgattttaataagatttgtgcaatgttgtgattaatt 6134223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 131 - 204
Target Start/End: Original strand, 2721825 - 2721899
Alignment:
Q  131 agttcaatttaagttattatacattatatgatagaataaatga-tttaataatatttgtggattgttgtgattaa 204  Q
    |||| |||| |||||||||||||||||||||||| |||||| | ||||||||||||| || |  |||||||||||    
T  2721825 agtttaattgaagttattatacattatatgatagtataaataattttaataatatttatgcaaggttgtgattaa 2721899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 137 - 246
Target Start/End: Complemental strand, 3234633 - 3234526
Alignment:
Q  137 atttaagttattatacattatatgatagaataaatgatttaataatatttgtggattgttgtgattaa-ttacaccgcgatgaccgcaatctataacgca 235  Q
    |||||||||||||||||||||||||||| ||||    ||||||||||||| || | ||||   ||||| ||||| || ||  ||| ||||||||||||||    
T  3234633 atttaagttattatacattatatgatagtataa---ttttaataatatttatgcaatgttacaattaacttacatcgtgacaaccacaatctataacgca 3234537  T
Q  236 acatccgtaac 246  Q
     ||||||||||    
T  3234536 tcatccgtaac 3234526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 246
Target Start/End: Original strand, 9771917 - 9771990
Alignment:
Q  174 tttaataatatttgtggattgttgtgattaatt-acaccgcgatgaccgcaatctataacgcaacatccgtaac 246  Q
    |||||||| ||||||| | |||||||||||||| ||| ||||| |||| ||||| |||| ||||||||| ||||    
T  9771917 tttaataacatttgtgcaatgttgtgattaattcacaacgcgacgaccacaatccataaggcaacatccttaac 9771990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 192 - 298
Target Start/End: Complemental strand, 29350060 - 29349954
Alignment:
Q  192 ttgttgtgattaattacaccgcgatgaccgcaatctataacgcaacatccgtaacgatcgaaatcgcgacaaccttaacatgaccgcggccgttatttaa 291  Q
    |||||||||| | | || || ||| ||||||||| ||||||||||||| |||||    ||||||||| |||||||||||| ||||||| |||||||||||    
T  29350060 ttgttgtgataattcacgccacgacgaccgcaatttataacgcaacattcgtaatagccgaaatcgcaacaaccttaacacgaccgcgaccgttatttaa 29349961  T
Q  292 aaccttg 298  Q
    |||||||    
T  29349960 aaccttg 29349954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0526 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0526
Description:

Target: scaffold0526; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 142 - 270
Target Start/End: Original strand, 3335 - 3465
Alignment:
Q  142 agttattatacattatatgatagaataaatgatttaataata-tttgtggattgttgtgattaatt-acaccgcgatgaccgcaatctataacgcaacat 239  Q
    ||||||||| |||||| |||||| |||||| ||||||| ||| |||||| | |||||||||||||| |||| ||||| |||  |||||||| |||| ||     
T  3335 agttattatgcattatctgatagtataaataatttaattataatttgtgcaatgttgtgattaattcacacagcgataaccataatctatatcgcagcac 3434  T
Q  240 ccgtaacgatcgaaatcgcgacaaccttaac 270  Q
     | | ||  |||||||||| |||||||||||    
T  3435 tcattactgtcgaaatcgcaacaaccttaac 3465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 37
Target Start/End: Original strand, 30707 - 30742
Alignment:
Q  2 ggaagcgaaaaacacaacaccgttcataagaaaaaa 37  Q
    ||||||||| ||||||||||||||||||||||||||    
T  30707 ggaagcgaagaacacaacaccgttcataagaaaaaa 30742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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