View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7439_low_1 (Length: 637)
Name: NF7439_low_1
Description: NF7439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7439_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 490; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 1 - 621
Target Start/End: Original strand, 13379245 - 13379865
Alignment:
| Q |
1 |
aaccttatctccaactttgatgtttgtcaccttgcttcccacctctgtcacttcaccagcaacttcatgtctttacacaaatgagatgagaaagaaacaa |
100 |
Q |
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|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13379245 |
aaccctatctccaactttgatgtttttcaccttgcttcccacctctgtcacttcaccagcaacttcatgtctttacacaaatgagatgagaaagaaacaa |
13379344 |
T |
|
| Q |
101 |
aaaattagtttgttttataacggagtaatgtttaactcattgnnnnnnnnnnnnnnnntggtttgttttgtgatgttagagtacccaggaactactgggt |
200 |
Q |
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||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
13379345 |
aaaattagtttgttttataacagagtaatgtttaactcattgaaaataaaataaaaaatggtttgttttgtgatgttagagtacccaggaactactgggt |
13379444 |
T |
|
| Q |
201 |
aagtagtactgccccactcattcttcgccatatggaggtccgagtgacatataccgcagaatagtactttgaatgccacatccttctcccctgtttccct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
13379445 |
aagtagtactgccccactcattcttcgccatatggaggtccgagtgacatataccgcaaaatagtactttgaatgccacatccttctcccctgtttccct |
13379544 |
T |
|
| Q |
301 |
gaaaaggaatgaaaaagagcagtgttatttctcgcgagtgatgtgctcgtgttaattagcattacgacagaaatagcacctgcattaccactagtcagca |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||| |
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| T |
13379545 |
gaaaaggaatgaaaaagagcagtgttatttctcgcgagtgatgtgctcgtgttaattagcattatgccacaaatagcacctgcattaccactagtcagca |
13379644 |
T |
|
| Q |
401 |
ccctcttaccatacaaggagccaattaaaataaatcatatgtcaatcgtgattttcgctataacaatgcttctcgatctttatcattatccat--nnnnn |
498 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13379645 |
ccctcttaccatacaaggagccaattaaaataaatcatatgtcaatcgtgattttcgctataacaatgcttctcgatctttatcattatccataaaaaaa |
13379744 |
T |
|
| Q |
499 |
nnnntattcaggattttacatcacacatcatcattcaggatgaatctctacaatgaaaatctcttatgttttctcaagcaggacaattcacaccctgtct |
598 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
13379745 |
aaaaaattcaggattttacatcacacatcatcattcaggatgaatctctacaaagaaaatctcttatgttttctcaagcaggacaatt--caccctgtct |
13379842 |
T |
|
| Q |
599 |
ttaaatcttttaactttttgatg |
621 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
13379843 |
ttaaatcttttaactttttgatg |
13379865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 161 - 306
Target Start/End: Original strand, 13373592 - 13373738
Alignment:
| Q |
161 |
gtttgttttgtgatgtta-gagtacccaggaactactgggtaagtagtactgccccactcattcttcgccatatggaggtccgagtgacatataccgcag |
259 |
Q |
| |
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||||||||| |||||||| |||||||| ||||||| |||||| ||| ||| |||||||| |||||| ||| ||||| ||||| ||||||||||| || |
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| T |
13373592 |
gtttgttttatgatgttaagagtacccgggaactaaagggtaaatagaactaccccactcgttcttcagcatgtggagatccgaatgacatataccacaa |
13373691 |
T |
|
| Q |
260 |
aatagtactttgaatgccacatccttctcccctgtttccctgaaaag |
306 |
Q |
| |
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|||||||||||||||||||||| || || || |||||||||||||| |
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| T |
13373692 |
tatagtactttgaatgccacatctttttctcccgtttccctgaaaag |
13373738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 77
Target Start/End: Original strand, 13373450 - 13373525
Alignment:
| Q |
2 |
accttatctccaactttgatgtttgtcaccttgcttcccacctctgtcacttcaccagcaacttcatgtctttaca |
77 |
Q |
| |
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||||| ||||||||||||| ||||||||| ||||||| |||| |||||||||||||| ||||||||| ||||||| |
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| T |
13373450 |
accttgtctccaactttgaactttgtcaccatgcttccaacctttgtcacttcaccagaaacttcatgcctttaca |
13373525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 304
Target Start/End: Complemental strand, 13393274 - 13393151
Alignment:
| Q |
181 |
gtacccaggaactactgggtaagtagtactgccccactcattcttcgccatatggaggtccgagtgacatataccgcagaatagtactttgaatgccaca |
280 |
Q |
| |
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|||||||||||||| ||| || |||| ||||||| |||||||| |||||| || |||||||||||||| || || | |||||||| ||||||||| |
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| T |
13393274 |
gtacccaggaactagtggataggtagacatgccccattcattctttatcatatgaagatccgagtgacatatcccacaatacagtactttaaatgccaca |
13393175 |
T |
|
| Q |
281 |
tccttctcccctgtttccctgaaa |
304 |
Q |
| |
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|| || || || ||||| |||||| |
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| T |
13393174 |
tctttttcacccgtttctctgaaa |
13393151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 210 - 252
Target Start/End: Original strand, 13454385 - 13454427
Alignment:
| Q |
210 |
tgccccactcattcttcgccatatggaggtccgagtgacatat |
252 |
Q |
| |
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||||||| |||||||||||| |||| ||||||||||||||||| |
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| T |
13454385 |
tgccccattcattcttcgccttatgaaggtccgagtgacatat |
13454427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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