View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7439_low_13 (Length: 335)
Name: NF7439_low_13
Description: NF7439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7439_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 2 - 315
Target Start/End: Original strand, 3622435 - 3622749
Alignment:
| Q |
2 |
gtcatgcatgatgccaaatattgagtttagttcattcatctaatttgttttctttgactggatttttcatctaaactttgtctgttggcacaaccatgca |
101 |
Q |
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| T |
3622435 |
gtcatgcatgatgccaaatattgagtttagttcattcatctaatttgttttctttgactggatttttcatctaaactttgtctgttggcacaaccatgca |
3622534 |
T |
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| Q |
102 |
ttaaagcgatcttataatgg--aaaaaatggggaagttaattttattcaacattttcttatgttgttccatcatgcatgacgtcaaaaatagatataaac |
199 |
Q |
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| T |
3622535 |
ttaaagcgatcttataatggaaaaaaaatagggaagttaattttattcaacattttcttatgttgttccatcatgcatgacgtcaaaaatagatataaac |
3622634 |
T |
|
| Q |
200 |
tagttttttgatagaatattttccatataattaaactgattggctatcaatgctcatgtgatgcannnnnnnctcttgttttcatgtataggttatttta |
299 |
Q |
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||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |
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| T |
3622635 |
tagttttttgatagaatgtttt-catataattaaactgattggctatcaatcctcatgtgatgcatttttttctcttgttttcatgtataggttatttta |
3622733 |
T |
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| Q |
300 |
tagttctttattcttg |
315 |
Q |
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|||||||||||||||| |
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| T |
3622734 |
tagttctttattcttg |
3622749 |
T |
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