View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7439_low_14 (Length: 328)

Name: NF7439_low_14
Description: NF7439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7439_low_14
NF7439_low_14
[»] chr7 (8 HSPs)
chr7 (148-328)||(19216898-19217078)
chr7 (150-328)||(41256156-41256334)
chr7 (8-140)||(19217144-19217276)
chr7 (8-135)||(41255956-41256083)
chr7 (148-328)||(15891755-15891923)
chr7 (8-140)||(15891989-15892121)
chr7 (38-108)||(25010997-25011067)
chr7 (152-232)||(25011169-25011249)
[»] chr1 (8 HSPs)
chr1 (148-328)||(50516659-50516837)
chr1 (148-328)||(33803090-33803270)
chr1 (148-328)||(44711783-44711963)
chr1 (8-140)||(50516905-50517037)
chr1 (8-140)||(33803336-33803468)
chr1 (8-140)||(44711585-44711717)
chr1 (8-140)||(45909343-45909475)
chr1 (30-109)||(10549314-10549393)
[»] chr8 (7 HSPs)
chr8 (148-328)||(9139253-9139433)
chr8 (148-310)||(23254524-23254686)
chr8 (148-328)||(755418-755598)
chr8 (148-328)||(23709217-23709398)
chr8 (8-140)||(9139055-9139187)
chr8 (10-140)||(23254752-23254882)
chr8 (8-140)||(755664-755790)
[»] chr5 (8 HSPs)
chr5 (148-328)||(20235344-20235524)
chr5 (148-328)||(34832613-34832793)
chr5 (8-140)||(20235146-20235278)
chr5 (8-129)||(25761720-25761841)
chr5 (8-135)||(34832415-34832542)
chr5 (14-140)||(38966535-38966661)
chr5 (149-291)||(31049121-31049263)
chr5 (149-291)||(31044466-31044608)
[»] chr2 (13 HSPs)
chr2 (148-328)||(17311190-17311370)
chr2 (148-328)||(38621246-38621426)
chr2 (148-326)||(30213249-30213427)
chr2 (148-328)||(23937670-23937850)
chr2 (8-140)||(30213493-30213625)
chr2 (8-140)||(29809921-29810053)
chr2 (8-135)||(17310992-17311119)
chr2 (8-139)||(38621493-38621624)
chr2 (229-328)||(29809714-29809813)
chr2 (30-140)||(10925749-10925859)
chr2 (47-140)||(23937510-23937603)
chr2 (160-291)||(10925540-10925671)
chr2 (148-187)||(29809816-29809855)
[»] chr3 (4 HSPs)
chr3 (148-328)||(52971133-52971313)
chr3 (151-328)||(6160744-6160921)
chr3 (8-140)||(52970935-52971067)
chr3 (8-99)||(48094747-48094838)
[»] chr6 (1 HSPs)
chr6 (166-270)||(24131885-24131989)


Alignment Details
Target: chr7 (Bit Score: 149; Significance: 1e-78; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 148 - 328
Target Start/End: Complemental strand, 19217078 - 19216898
Alignment:
Q  148 tccaaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcgg 247  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||| ||||||||||||||    
T  19217078 tccaaaattgtcttttcaacatattccaaaaacttgggaaattttgcgcatagaactttgaatcgggtccaattatcaatgtatgcttcctccgtttcgg 19216979  T
Q  248 agtccacaatatccacccatgcagccatcacagtcttcaccaccgaagcaggcttaatcgcttacccattcttgcctttga 328  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  19216978 agtccacaatatccatccatgcagccatcacagtcttcaccaccgaaccaggcttaatcgctttcccattcttgcctttga 19216898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 150 - 328
Target Start/End: Original strand, 41256156 - 41256334
Alignment:
Q  150 caaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcggag 249  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||| ||||||    
T  41256156 caaaattgtcttttcaacatattccaaaaacttggaaaattttgcgcatagaactttaaaccgggtccaattatcaatatatgtttcctccgtgtcggag 41256255  T
Q  250 tccacaatatccacccatgcagccatcacagtcttcaccaccgaagcaggcttaatcgcttacccattcttgcctttga 328  Q
    |||||||||| || |||||||||||||||| | ||||||||||| |||||||||||||||| |||||||||||||||||    
T  41256256 tccacaatatacatccatgcagccatcacaattttcaccaccgacgcaggcttaatcgcttgcccattcttgcctttga 41256334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 8 - 140
Target Start/End: Complemental strand, 19217276 - 19217144
Alignment:
Q  8 tgaaatgaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatactttt 107  Q
    ||||||||||||| ||||||  |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||| ||||||||    
T  19217276 tgaaatgaagcatttattgcggtatgttgcaactctagcatgttatgaacggattgccagtttgtactcaaatcacccatactactactcaaatactttt 19217177  T
Q  108 tcgactgagcgtgtgcagattcagctctgtttg 140  Q
    || || || |||||||||||||| |||||||||    
T  19217176 tcaaccgaacgtgtgcagattcaactctgtttg 19217144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 8 - 135
Target Start/End: Original strand, 41255956 - 41256083
Alignment:
Q  8 tgaaatgaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatactttt 107  Q
    ||||||||||||||||||||  |||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||| ||||||||||| |||||||    
T  41255956 tgaaatgaagcatgtattgcggtatgttgcaactctagcatgttattaacggattgccagtttgtactcaaatcacccatactactactcaggtactttt 41256055  T
Q  108 tcgactgagcgtgtgcagattcagctct 135  Q
    |  ||  |||||||||||||||||||||    
T  41256056 taaacgaagcgtgtgcagattcagctct 41256083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 148 - 328
Target Start/End: Complemental strand, 15891923 - 15891755
Alignment:
Q  148 tccaaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcgg 247  Q
    |||||||||||||||| |||||| ||||||||||| || ||||||||||||| ||||||||||||||||||| |||||||||| | ||||||| |||||     
T  15891923 tccaaaattgtcttttcaacataatccaaaaacttagggaattttgcgcatacaactttgaaccgggtccaattatcaatatacgcttcctccatttcga 15891824  T
Q  248 agtccacaatatccacccatgcagccatcacagtcttcaccaccgaagcaggcttaatcgcttacccattcttgcctttga 328  Q
    ||| ||||||||            |||||||||||||||| ||| |||||||||| ||||||| |||||||||||||||||    
T  15891823 agtgcacaatat------------ccatcacagtcttcacaaccaaagcaggcttgatcgcttccccattcttgcctttga 15891755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 8 - 140
Target Start/End: Complemental strand, 15892121 - 15891989
Alignment:
Q  8 tgaaatgaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatactttt 107  Q
    ||||| ||||||||||||||  ||||||||||||||||||| | |||||||||||  ||||||||||| |||| |||||| |||||||||||||||||||    
T  15892121 tgaaacgaagcatgtattgcggtatgttgcaactctagcatctcatgaacggatttccagtttgtacttaaatcacccatactactactcagatactttt 15892022  T
Q  108 tcgactgagcgtgtgcagattcagctctgtttg 140  Q
    || ||  |||||||| |||||||  ||||||||    
T  15892021 tcaacctagcgtgtgtagattcaattctgtttg 15891989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 108
Target Start/End: Original strand, 25010997 - 25011067
Alignment:
Q  38 aactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatacttttt 108  Q
    ||||||| |||||| ||||| ||||  ||||||||||| |||| || ||| |||||| |||||||||||||    
T  25010997 aactctaacatgttgtgaacagatttccagtttgtacttaaattactcatactactaatcagatacttttt 25011067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 232
Target Start/End: Original strand, 25011169 - 25011249
Alignment:
Q  152 aaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatg 232  Q
    |||||||  ||| |||||||||||||||| | ||||| ||  |||||| | ||||||||||| | ||| ||||||||||||    
T  25011169 aaattgtagtttcaacatattccaaaaacataggaaacttgtcgcatacagctttgaaccggttgcaattatcaatatatg 25011249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 142; Significance: 2e-74; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 148 - 328
Target Start/End: Complemental strand, 50516837 - 50516659
Alignment:
Q  148 tccaaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcgg 247  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||| ||||||||| ||||    
T  50516837 tccaaaattgtcttttcaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaattat--atatatgcttcctccgtgtcgg 50516740  T
Q  248 agtccacaatatccacccatgcagccatcacagtcttcaccaccgaagcaggcttaatcgcttacccattcttgcctttga 328  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  50516739 agtccacaatatccatccatgcagccatcacagtcttcaccaccgacgcaggcttaatcgcttgcccattcttgcctttga 50516659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 148 - 328
Target Start/End: Complemental strand, 33803270 - 33803090
Alignment:
Q  148 tccaaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcgg 247  Q
    |||||||||||||||| ||||||||||||||| |||| |||||||| ||||||||||||||||||||||||| ||||||| |||| ||||||||||||||    
T  33803270 tccaaaattgtcttttcaacatattccaaaaatttggaaaattttgtgcatagaactttgaaccgggtccaattatcaatgtatgcttcctccgtttcgg 33803171  T
Q  248 agtccacaatatccacccatgcagccatcacagtcttcaccaccgaagcaggcttaatcgcttacccattcttgcctttga 328  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||    
T  33803170 agtccacaatatccatccatgcagccatcacaatcttcaccaccgaaccaggcttaatcgcttgcccattcttgcctttga 33803090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 148 - 328
Target Start/End: Original strand, 44711783 - 44711963
Alignment:
Q  148 tccaaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcgg 247  Q
    |||||||||||||||| ||||||||||||||| | || |||||||||| ||||||||||||| ||||||||| |||||||||||| ||||||||| ||||    
T  44711783 tccaaaattgtcttttcaacatattccaaaaattaggtaaattttgcgtatagaactttgaatcgggtccaattatcaatatatgcttcctccgtgtcgg 44711882  T
Q  248 agtccacaatatccacccatgcagccatcacagtcttcaccaccgaagcaggcttaatcgcttacccattcttgcctttga 328  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  44711883 agtccacaatatccgtccatgcagccatcacagtcttcaccaccgaagcaggcttaatcgcttgcccattcttgcctttga 44711963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 8 - 140
Target Start/End: Complemental strand, 50517037 - 50516905
Alignment:
Q  8 tgaaatgaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatactttt 107  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||| |||||||    
T  50517037 tgaaatgaagcatgtattgcggtatgttgcaactctagcatgttatgaacggattgccagtttgtactcaaatcacccatactactactcaggtactttt 50516938  T
Q  108 tcgactgagcgtgtgcagattcagctctgtttg 140  Q
    || || || ||||||||||||||||| ||||||    
T  50516937 tcaaccgatcgtgtgcagattcagctatgtttg 50516905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 8 - 140
Target Start/End: Complemental strand, 33803468 - 33803336
Alignment:
Q  8 tgaaatgaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatactttt 107  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||| ||||  |||||| ||||||||| |||||| |||||||||| | ||||||    
T  33803468 tgaaatgaagcatgtattgcggtatgttgcaactctagcatgttatgaacagatttccagtttttactcaaatcacccatactactactcaaacactttt 33803369  T
Q  108 tcgactgagcgtgtgcagattcagctctgtttg 140  Q
    || || ||||||| |||||||||||||||||||    
T  33803368 tcaaccgagcgtgcgcagattcagctctgtttg 33803336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 8 - 140
Target Start/End: Original strand, 44711585 - 44711717
Alignment:
Q  8 tgaaatgaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatactttt 107  Q
    |||||||||||||||||||   |||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||| ||||||||||| |||||||    
T  44711585 tgaaatgaagcatgtattgtggtatgttgcaactctagcatgttattaacggattgccagtttgtactcaaattacccatactactactcaggtactttt 44711684  T
Q  108 tcgactgagcgtgtgcagattcagctctgtttg 140  Q
    || || ||||| ||||||||||| || ||||||    
T  44711685 tcaaccgagcgagtgcagattcaactttgtttg 44711717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 8 - 140
Target Start/End: Original strand, 45909343 - 45909475
Alignment:
Q  8 tgaaatgaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatactttt 107  Q
    ||||||||| |||||| |||  |||||||||||||||||||||||| ||| ||||| |||||||||||||||| |||||| ||||||||||| ||| |||    
T  45909343 tgaaatgaaacatgtactgcggtatgttgcaactctagcatgttattaacagattgccagtttgtactcaaatcacccatactactactcaggtaccttt 45909442  T
Q  108 tcgactgagcgtgtgcagattcagctctgtttg 140  Q
    || || |||||||||||||||||||||||||||    
T  45909443 tcaaccgagcgtgtgcagattcagctctgtttg 45909475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 109
Target Start/End: Complemental strand, 10549393 - 10549314
Alignment:
Q  30 tatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatactttttc 109  Q
    ||||||| | |||||||||||| ||||||||||  ||||||||||| |||| || ||| |||||| |||||| |||||||    
T  10549393 tatgttgtagctctagcatgttgtgaacggattcccagtttgtacttaaatcactcatactactagtcagatgctttttc 10549314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 137; Significance: 2e-71; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 148 - 328
Target Start/End: Original strand, 9139253 - 9139433
Alignment:
Q  148 tccaaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcgg 247  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||  |||||| |||| ||||||||||||||    
T  9139253 tccaaaattgtcttttcaacatattccaaaaacttggaaaattttgcgcatagaactttgaaccgagtccaatcatcaatgtatgcttcctccgtttcgg 9139352  T
Q  248 agtccacaatatccacccatgcagccatcacagtcttcaccaccgaagcaggcttaatcgcttacccattcttgcctttga 328  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  9139353 agtccacaatatctatccatgcagccatcacagtcttcaccaccgaaccaggcttaatcgctttcccattcttgcctttga 9139433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 148 - 310
Target Start/End: Complemental strand, 23254686 - 23254524
Alignment:
Q  148 tccaaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcgg 247  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||| ||||||    
T  23254686 tccaaaattatcttttcaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaattatcaatgtatgcttcctccttttcgg 23254587  T
Q  248 agtccacaatatccacccatgcagccatcacagtcttcaccaccgaagcaggcttaatcgctt 310  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||    
T  23254586 agtccacaatatccatccatgcagccgtcacagtcttcaccaccgaaccaggcttaatcgctt 23254524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 148 - 328
Target Start/End: Complemental strand, 755598 - 755418
Alignment:
Q  148 tccaaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcgg 247  Q
    |||||||||||||||| |||||| |||| |||||| |||||||||||||||| | |||||||||| |||||| |||||||||||| ||||||||||||||    
T  755598 tccaaaattgtcttttcaacataatccagaaacttaggaaattttgcgcatacatctttgaaccgagtccaattatcaatatatgcttcctccgtttcgg 755499  T
Q  248 agtccacaatatccacccatgcagccatcacagtcttcaccaccgaagcaggcttaatcgcttacccattcttgcctttga 328  Q
    ||||||||||||||| |||  ||||||||||| | ||||||||||||||||||||||||| || |||||| ||||||||||    
T  755498 agtccacaatatccaaccagacagccatcacaattttcaccaccgaagcaggcttaatcgattccccattattgcctttga 755418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 148 - 328
Target Start/End: Original strand, 23709217 - 23709398
Alignment:
Q  148 tccaaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcgg 247  Q
    ||||| |||||||||| || ||| ||||||||||| ||||||||  |||||| |||||||||    |||||| |||||||||||| ||||||||||||||    
T  23709217 tccaacattgtcttttcaaaataatccaaaaacttaggaaatttcccgcatacaactttgaattttgtccaattatcaatatatgcttcctccgtttcgg 23709316  T
Q  248 agtccacaatatccacccatgcagccatcacagtcttca-ccaccgaagcaggcttaatcgcttacccattcttgcctttga 328  Q
    | ||| ||||||||| ||||||||||||||||||||||| |||| || |||||||| ||||||| |||||||||||||||||    
T  23709317 actcctcaatatccatccatgcagccatcacagtcttcacccacagaggcaggcttgatcgcttccccattcttgcctttga 23709398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 8 - 140
Target Start/End: Original strand, 9139055 - 9139187
Alignment:
Q  8 tgaaatgaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatactttt 107  Q
    ||||||||| ||||||||||  |||||||||||||||||||||||||||| ||||| |||||||||||||||| || ||| |||||||||| ||||||||    
T  9139055 tgaaatgaaacatgtattgcggtatgttgcaactctagcatgttatgaacagattgccagtttgtactcaaatcactcatactactactcaaatactttt 9139154  T
Q  108 tcgactgagcgtgtgcagattcagctctgtttg 140  Q
    || |  ||||||||||| ||||| |||||||||    
T  9139155 tcaatcgagcgtgtgcacattcaactctgtttg 9139187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 10 - 140
Target Start/End: Complemental strand, 23254882 - 23254752
Alignment:
Q  10 aaatgaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatactttttc 109  Q
    ||||||||||||| ||||  |||| ||||||||||||||||||||||||||||| |||||||||||||||| | | || |||||||||| ||||||| ||    
T  23254882 aaatgaagcatgttttgcggtatgatgcaactctagcatgttatgaacggattgccagtttgtactcaaatcatctatactactactcaaatactttctc 23254783  T
Q  110 gactgagcgtgtgcagattcagctctgtttg 140  Q
     |  |||||| | ||||||||||||||||||    
T  23254782 aatcgagcgtctacagattcagctctgtttg 23254752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 140
Target Start/End: Complemental strand, 755790 - 755664
Alignment:
Q  8 tgaaatgaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatactttt 107  Q
    ||||| |||||||||||| |  |||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||      |||| || |||||||    
T  755790 tgaaacgaagcatgtattacggtatgttgcaactatagcatgtcatgaacggatttgcagtttgtactcaaataaccca------tacttaggtactttt 755697  T
Q  108 tcgactgagcgtgtgcagattcagctctgtttg 140  Q
    || || |||||||||||||||||||||| ||||    
T  755696 tcaaccgagcgtgtgcagattcagctctatttg 755664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 137; Significance: 2e-71; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 148 - 328
Target Start/End: Original strand, 20235344 - 20235524
Alignment:
Q  148 tccaaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcgg 247  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||| || |||||||||||    
T  20235344 tccaaaattgtcttttcaacatattccaaaaacttgggaaattttgcgtatagaactttgaaccgggtccaattatcaatgtatgctttctccgtttcgg 20235443  T
Q  248 agtccacaatatccacccatgcagccatcacagtcttcaccaccgaagcaggcttaatcgcttacccattcttgcctttga 328  Q
    ||||||||||||||| |||||||||||| |||||||||||||| ||| ||||||||||||||| |||||||||||||||||    
T  20235444 agtccacaatatccatccatgcagccatgacagtcttcaccactgaaccaggcttaatcgcttgcccattcttgcctttga 20235524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 148 - 328
Target Start/End: Original strand, 34832613 - 34832793
Alignment:
Q  148 tccaaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcgg 247  Q
    ||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| || ||||    
T  34832613 tccaaaattttcttttcaacatattccaaaaactcgggaaattttgcgcatagaactttgaaccgggtccaattatcaatatatgtttcctctgtgtcgg 34832712  T
Q  248 agtccacaatatccacccatgcagccatcacagtcttcaccaccgaagcaggcttaatcgcttacccattcttgcctttga 328  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||| ||| ||||||| ||||  ||||||||||||||||    
T  34832713 agtccacaatatccatccatgcagccatcacagtctacaccaccgacgcatgcttaattgcttgtccattcttgcctttga 34832793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 8 - 140
Target Start/End: Original strand, 20235146 - 20235278
Alignment:
Q  8 tgaaatgaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatactttt 107  Q
    ||||||||||||||||||||  |||||| ||||||||| ||||||||||||||||| |||||||||||||||| ||||||  |||||||||  |||||||    
T  20235146 tgaaatgaagcatgtattgcggtatgtttcaactctagtatgttatgaacggattgccagtttgtactcaaatcacccatattactactcaattactttt 20235245  T
Q  108 tcgactgagcgtgtgcagattcagctctgtttg 140  Q
    || ||||||||||||||||||||||||||||||    
T  20235246 tcaactgagcgtgtgcagattcagctctgtttg 20235278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 8 - 129
Target Start/End: Complemental strand, 25761841 - 25761720
Alignment:
Q  8 tgaaatgaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatactttt 107  Q
    ||||||||||||||||||||  ||| ||||||||||| |||||||||||||||||| |||||||||||||||| |||||| ||||||||||| |||||||    
T  25761841 tgaaatgaagcatgtattgcggtattttgcaactctaccatgttatgaacggattgccagtttgtactcaaatcacccatactactactcaggtactttt 25761742  T
Q  108 tcgactgagcgtgtgcagattc 129  Q
    || || ||||||||||||||||    
T  25761741 tcaaccgagcgtgtgcagattc 25761720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 8 - 135
Target Start/End: Original strand, 34832415 - 34832542
Alignment:
Q  8 tgaaatgaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatactttt 107  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||| ||||||||||  |||||||    
T  34832415 tgaaatgaagcatgtattgcggtatgttgcaactctagcatgttatgaacggattgccagtttgtactcaaatctcccatactactactcaagtactttt 34832514  T
Q  108 tcgactgagcgtgtgcagattcagctct 135  Q
    || |   |||||||| ||||||||||||    
T  34832515 tcaaacaagcgtgtgaagattcagctct 34832542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 14 - 140
Target Start/End: Complemental strand, 38966661 - 38966535
Alignment:
Q  14 gaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatactttttcgact 113  Q
    |||||||||||| |  ||||||||||||||||||||| |||||||| ||  ||||||||||| |||| |||||| ||||||||||||||||||||| ||     
T  38966661 gaagcatgtattacggtatgttgcaactctagcatgtcatgaacggctttccagtttgtactaaaatcacccatactactactcagatactttttcaacc 38966562  T
Q  114 gagcgtgtgcagattcagctctgtttg 140  Q
    ||||||||||| |||||||||| ||||    
T  38966561 gagcgtgtgcatattcagctctatttg 38966535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 149 - 291
Target Start/End: Original strand, 31049121 - 31049263
Alignment:
Q  149 ccaaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcgga 248  Q
    |||||||| | |||| |||||||| || |||||| ||||||||   ||||| ||||||||||||| | ||| |||||| ||||| || ||| || || ||    
T  31049121 ccaaaattttattttcaacatatttcacaaacttaggaaatttgtggcatacaactttgaaccggttgcaattatcaacatatgcttgctctgtatcaga 31049220  T
Q  249 gtccacaatatccacccatgcagccatcacagtcttcaccacc 291  Q
     | ||| |||||| |||||||| |||| || ||||||||||||    
T  31049221 attcacgatatcctcccatgcaaccataaccgtcttcaccacc 31049263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 291
Target Start/End: Original strand, 31044466 - 31044608
Alignment:
Q  149 ccaaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcgga 248  Q
    |||||||| | |||| |||||||| ||||||||| ||||||||   ||||| ||||||||||||| | ||| |||||| ||||| || ||| || ||  |    
T  31044466 ccaaaattatattttcaacatatttcaaaaacttaggaaatttgtggcatacaactttgaaccggttgcaattatcaacatatgcttgctctgtatcaaa 31044565  T
Q  249 gtccacaatatccacccatgcagccatcacagtcttcaccacc 291  Q
     | ||| |||||| |||||||| |||| || || |||||||||    
T  31044566 attcacgatatcctcccatgcaaccataaccgttttcaccacc 31044608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 137; Significance: 2e-71; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 148 - 328
Target Start/End: Original strand, 17311190 - 17311370
Alignment:
Q  148 tccaaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcgg 247  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||| ||||||||||||||    
T  17311190 tccaaaattgtcttttcaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccggttccaattatcaatgtatgcttcctccgtttcgg 17311289  T
Q  248 agtccacaatatccacccatgcagccatcacagtcttcaccaccgaagcaggcttaatcgcttacccattcttgcctttga 328  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||| || ||||||| ||||||    
T  17311290 agtccacaatatccatccatgcatccatcacagtcttcaccaccgaaccaggcttaatcgcttgccaattcttgtctttga 17311370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 148 - 328
Target Start/End: Complemental strand, 38621426 - 38621246
Alignment:
Q  148 tccaaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcgg 247  Q
    |||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||  | ||||    
T  38621426 tccaaaattgtcttttcaacatattcctataacttgggaaattttgcgcatagaactttgaaccgggtccaattatcaatatatgcttcctctatgtcgg 38621327  T
Q  248 agtccacaatatccacccatgcagccatcacagtcttcaccaccgaagcaggcttaatcgcttacccattcttgcctttga 328  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||    
T  38621326 agtccacaatatccatccatgcagccatcacagtcttcaccaccgacgcatgcttaatcgcttgcccattcttgcctttga 38621246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 148 - 326
Target Start/End: Complemental strand, 30213427 - 30213249
Alignment:
Q  148 tccaaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcgg 247  Q
    |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||| | ||    
T  30213427 tccaaaattgtcttttcaacatattccaaaaacatgggaaattttgcgcatagaactttgaaccgggtccaattatcaatatatgcttcctacgtgttgg 30213328  T
Q  248 agtccacaatatccacccatgcagccatcacagtcttcaccaccgaagcaggcttaatcgcttacccattcttgccttt 326  Q
    |||||||| |||||| |||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||    
T  30213327 agtccacagtatccatccatgcagccatcatagtcttcaccaccgacgcaggcttaatcgcttgcccattcttgccttt 30213249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 148 - 328
Target Start/End: Original strand, 23937670 - 23937850
Alignment:
Q  148 tccaaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcgg 247  Q
    |||||||||||||||| |||||| ||||||||| | | |||||||||||||| |||||||||| |||||||| |||||||||||| ||||||||||||||    
T  23937670 tccaaaattgtcttttcaacataatccaaaaacatagaaaattttgcgcatacaactttgaactgggtccaattatcaatatatgcttcctccgtttcgg 23937769  T
Q  248 agtccacaatatccacccatgcagccatcacagtcttcaccaccgaagcaggcttaatcgcttacccattcttgcctttga 328  Q
    ||||||||||||||| |||||||||||||||| ||||||||||| |||||||||| ||||||| ||| |||||||||||||    
T  23937770 agtccacaatatccaaccatgcagccatcacaatcttcaccaccaaagcaggcttgatcgcttcccccttcttgcctttga 23937850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 8 - 140
Target Start/End: Complemental strand, 30213625 - 30213493
Alignment:
Q  8 tgaaatgaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatactttt 107  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||| |||||||||||||||| |||||| ||||||||||| |||||||    
T  30213625 tgaaatgaagcatgtattgcagtatgttgcaactctaccatgttatgaacagattgccagtttgtactcaaatcacccatactactactcaggtactttt 30213526  T
Q  108 tcgactgagcgtgtgcagattcagctctgtttg 140  Q
    || || |||||||||||||||||||||||||||    
T  30213525 tcaaccgagcgtgtgcagattcagctctgtttg 30213493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 8 - 140
Target Start/End: Complemental strand, 29810053 - 29809921
Alignment:
Q  8 tgaaatgaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatactttt 107  Q
    ||||||||| ||||||||||  |||||||||||| ||||||||||||||||||||  ||||||||||||||||||||||| |||||||||| ||||||||    
T  29810053 tgaaatgaatcatgtattgcggtatgttgcaactttagcatgttatgaacggatttccagtttgtactcaaatgacccatactactactcaaatactttt 29809954  T
Q  108 tcgactgagcgtgtgcagattcagctctgtttg 140  Q
    || || |||||||||||||||||||||||||||    
T  29809953 tcaacagagcgtgtgcagattcagctctgtttg 29809921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 8 - 135
Target Start/End: Original strand, 17310992 - 17311119
Alignment:
Q  8 tgaaatgaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatactttt 107  Q
    ||||||||||||||||||||  |||||||||||||||| |||||||||||||||||  ||||||||||||||| |||||| |||||||||| ||||||||    
T  17310992 tgaaatgaagcatgtattgcggtatgttgcaactctagaatgttatgaacggattgctagtttgtactcaaatcacccatactactactcaaatactttt 17311091  T
Q  108 tcgactgagcgtgtgcagattcagctct 135  Q
    || || ||||||||||||||||||||||    
T  17311092 tcaaccgagcgtgtgcagattcagctct 17311119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 8 - 139
Target Start/End: Complemental strand, 38621624 - 38621493
Alignment:
Q  8 tgaaatgaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatactttt 107  Q
    ||||||||||||| ||||||  |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||| ||||||     
T  38621624 tgaaatgaagcatttattgcggtatgttgcaactctagcatgttatgaacggattgccagtttgtactcaaatcacccatactactactcaggtactttc 38621525  T
Q  108 tcgactgagcgtgtgcagattcagctctgttt 139  Q
    || || ||| ||||||||||||||||||||||    
T  38621524 tcaaccgagtgtgtgcagattcagctctgttt 38621493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 229 - 328
Target Start/End: Complemental strand, 29809813 - 29809714
Alignment:
Q  229 tatgattcctccgtttcggagtccacaatatccacccatgcagccatcacagtcttcaccaccgaagcaggcttaatcgcttacccattcttgcctttga 328  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||| ||||||||||    
T  29809813 tatgcttcctccgtttcggagtccacaatatccacccatgcagccatcacaatcttcaccaccgaaccaggcttaatcgctttcccatttttgcctttga 29809714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 30 - 140
Target Start/End: Complemental strand, 10925859 - 10925749
Alignment:
Q  30 tatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatactttttcgactgagcgtgtgcagattc 129  Q
    |||||||  ||||||||||||| |||||||| |  ||||||||||| |||| |||||  ||||||  |||||||||||||||| |    ||||||||||     
T  10925859 tatgttgtgactctagcatgttgtgaacggagttccagtttgtacttaaatcacccacactactagccagatactttttcgaccggttatgtgcagattt 10925760  T
Q  130 agctctgtttg 140  Q
    |||||||||||    
T  10925759 agctctgtttg 10925749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 140
Target Start/End: Original strand, 23937510 - 23937603
Alignment:
Q  47 atgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatactttttcgactgagcgtgtgcagattcagctctgtttg 140  Q
    |||| ||||| |||||| ||||||||||| | || | |||| |||||| |||||||||||||| || ||| ||||||||||||  |||||||||    
T  23937510 atgtcatgaatggattgtcagtttgtacttagatcatccatactactattcagatactttttcaaccgagtgtgtgcagattcgactctgtttg 23937603  T

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Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 291
Target Start/End: Complemental strand, 10925671 - 10925540
Alignment:
Q  160 ttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcggagtccacaatat 259  Q
    |||| |||||||||||||||||| ||||||||   ||||| |||||||||  || | ||| |||||| ||||| || ||  || ||||| | ||| ||||    
T  10925671 ttttcaacatattccaaaaacttaggaaatttgttgcatacaactttgaataggttgcaattatcaacatatggttgctatgtatcggaattcacgatat 10925572  T
Q  260 ccacccatgcagccatcacagtcttcaccacc 291  Q
    || |||||||| ||| ||| ||||||||||||    
T  10925571 cctcccatgcaaccaccaccgtcttcaccacc 10925540  T

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Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 148 - 187
Target Start/End: Complemental strand, 29809855 - 29809816
Alignment:
Q  148 tccaaaattgtcttttaaacatattccaaaaacttgggaa 187  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  29809855 tccaaaattgtcttttcaacatattccaaaaacttgggaa 29809816  T

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Target: chr3 (Bit Score: 133; Significance: 4e-69; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 148 - 328
Target Start/End: Original strand, 52971133 - 52971313
Alignment:
Q  148 tccaaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcgg 247  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||  ||||||||||| ||    
T  52971133 tccaaaattgtcttttcaacatatttcaaaaacttgggaaattttgcgcatataactttgaaccgggtccaattatcaatgtatacttcctccgttttgg 52971232  T
Q  248 agtccacaatatccacccatgcagccatcacagtcttcaccaccgaagcaggcttaatcgcttacccattcttgcctttga 328  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| | |||||||||||||||    
T  52971233 agtccacaatatccacccatgcagccatcatagtcttcaccaccgaaccaggcttaatcgctttctcattcttgcctttga 52971313  T

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Target: chr3; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 151 - 328
Target Start/End: Original strand, 6160744 - 6160921
Alignment:
Q  151 aaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcggagt 250  Q
    ||||||||||||| |||||| ||||||||||| |||||||||| ||||| ||||||||||||||||||| |||||||||||| ||||||| |||||||||    
T  6160744 aaaattgtcttttcaacataatccaaaaacttaggaaattttgtgcatacaactttgaaccgggtccaattatcaatatatgcttcctccatttcggagt 6160843  T
Q  251 ccacaatatccacccatgcagccatcacagtcttcaccaccgaagcaggcttaatcgcttacccattcttgcctttga 328  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  6160844 ccacaatatccatccatgcaaccatcacagtcttcaccaccgaagcacgcttaatcgcttgcccattcttgcctttga 6160921  T

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Target: chr3; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 8 - 140
Target Start/End: Original strand, 52970935 - 52971067
Alignment:
Q  8 tgaaatgaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatactttt 107  Q
    ||||||||||||||||||||  |||||||||||||||||||||||  ||||||||  |||||||||||||||| |||||| |||||||||| || |||||    
T  52970935 tgaaatgaagcatgtattgcggtatgttgcaactctagcatgttacaaacggatttccagtttgtactcaaatcacccatactactactcaaatgctttt 52971034  T
Q  108 tcgactgagcgtgtgcagattcagctctgtttg 140  Q
    || || |||||| ||||||||||||||||||||    
T  52971035 tcaaccgagcgtctgcagattcagctctgtttg 52971067  T

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Target: chr3; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 8 - 99
Target Start/End: Complemental strand, 48094838 - 48094747
Alignment:
Q  8 tgaaatgaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcag 99  Q
    ||||||||||||||||||||  |||||||||||||||||||||||| ||||||||| |||||||||||||||| ||| || |||||||||||    
T  48094838 tgaaatgaagcatgtattgcggtatgttgcaactctagcatgttattaacggattgccagtttgtactcaaatcacctatactactactcag 48094747  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 270
Target Start/End: Original strand, 24131885 - 24131989
Alignment:
Q  166 acatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcggagtccacaatatccaccc 265  Q
    |||||||||| ||||||| |  ||||| |||| | ||||||||||||| | ||| |||||| ||||| ||| ||| | || || |||||||||||| |||    
T  24131885 acatattccacaaacttgagccatttttcgcaaacaactttgaaccggctgcaattatcaacatatgtttcttccatatcagaatccacaatatcctccc 24131984  T
Q  266 atgca 270  Q
    |||||    
T  24131985 atgca 24131989  T

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