View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7439_low_15 (Length: 327)
Name: NF7439_low_15
Description: NF7439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7439_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 67 - 309
Target Start/End: Complemental strand, 35103532 - 35103294
Alignment:
| Q |
67 |
tttgtttgactttgacactaatcttttgtggtttgagatctaatatcttcatgtgcactcgannnnnnnnnnnnnnnnnnnnnnnaaaacaaacacttgg |
166 |
Q |
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| T |
35103532 |
tttgtttgactttgacactaatcttttgtggtttgagatctaatatcttcatgtgcactcgattttttatttttaatatttttttaaaacaaacacttgg |
35103433 |
T |
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| Q |
167 |
atttcatttacttaattttgcaccagaaatcatgtgtgtacgtatgtgtatacatgatggatcatattacactgaaataacaatatttgaattgtgttgc |
266 |
Q |
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| T |
35103432 |
atttcatttactt----ttgcaccagaaatcatgtgtgtacgtatgtgtatacatgatggatcatattacactgaaataataatatttgaattgtgttgc |
35103337 |
T |
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| Q |
267 |
attgctctataacnnnnnnnataaagcagtagagtacaataat |
309 |
Q |
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| T |
35103336 |
attgctctataactttttttataaagcagtagagtacaataat |
35103294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 35103624 - 35103563
Alignment:
| Q |
1 |
gcatgatattgattagttgaaggaaatatgggtactttttcaaataatcataatatcttata |
62 |
Q |
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| T |
35103624 |
gcatgatcttgattagttgaaggaaatatgggtactttttcaaataatcataatatcttata |
35103563 |
T |
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