View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7439_low_16 (Length: 319)
Name: NF7439_low_16
Description: NF7439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7439_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 19 - 304
Target Start/End: Complemental strand, 35430082 - 35429792
Alignment:
| Q |
19 |
aattgaacaattttaaagcatggaaatttgagttnnnnnnntaacaagaataagaactttataact---tattttaatacgcgaannnnnnnnn--aatc |
113 |
Q |
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| T |
35430082 |
aattgaacaattttaaagcatggaaatttgagttaaaaaaataacaagaataagaactttataactaattattttaatacgcgatattttttttttaatc |
35429983 |
T |
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| Q |
114 |
aacaagaagtgcgattgcagaaaaatacaaacaaaaaagagccaaagaataactagaatcagtggctctcaccacaataatacagacgaagcagaaagca |
213 |
Q |
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| T |
35429982 |
aacaagaagtgcgattgcagaaaaatacaaacaaaaaagagccaaagaataactagaatcagtggctctcaccacaataatacagacaaagcagaaagca |
35429883 |
T |
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| Q |
214 |
cgacacagacctgccacaccttacaacaataaacccacaaaaacaaacaccattagagacccaataaacctgaaacaatgaacaagggact |
304 |
Q |
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| T |
35429882 |
cgacacagacctgccacaccttacaacaataaacccacaaaaacaaacaccattagagacccaatacacctgaaacaatgaacaagggact |
35429792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 112 - 304
Target Start/End: Complemental strand, 35420845 - 35420653
Alignment:
| Q |
112 |
tcaacaagaagtgcgattgcagaaaaatacaaacaaaaaagagccaaagaataactagaatcagtggctctcaccacaataatacagacgaagcagaaag |
211 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
35420845 |
tcaacaagaagtgcgattgcagaaacatacaaacaaaaaagagccaaagaataactagaatcagtggctctcaccacaataatacagacaaagcagaaag |
35420746 |
T |
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| Q |
212 |
cacgacacagacctgccacaccttacaacaataaacccacaaaaacaaacaccattagagacccaataaacctgaaacaatgaacaagggact |
304 |
Q |
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| T |
35420745 |
cacgacacagacctgccacaccttacaacaataaacccacaaaaacaaacaccattagagacccaatacacctgaaacaatgaacaagggact |
35420653 |
T |
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