View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7439_low_17 (Length: 279)
Name: NF7439_low_17
Description: NF7439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7439_low_17 |
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| [»] scaffold0303 (1 HSPs) |
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| [»] scaffold0004 (1 HSPs) |
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Alignment Details
Target: scaffold0303 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: scaffold0303
Description:
Target: scaffold0303; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 2 - 261
Target Start/End: Complemental strand, 19892 - 19633
Alignment:
| Q |
2 |
tggcttttggtacccaaatcattttgggtcctagagagttagaattaggcaaagtgccctttggagtccacttccatttattattcatatcattgttctt |
101 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
19892 |
tggcttttggtacccaaatcattttgggtccttgagagttagaattaggcaaagtgccctttggagtccacttccatttatcattcatatcattgttctt |
19793 |
T |
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| Q |
102 |
tcttaaattacaaatagaagatgtatgaccttctcttccacaataaaaacatttaacaaaaggagaacttgaggttttgtttgggcgaaagaattttcga |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
19792 |
tcttaaattacaaatagaagatgtatgaccttctcttccacaataaaaacatttaacaaaaggagaacttgaggttttgtttgggcgaaagaatttttga |
19693 |
T |
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| Q |
202 |
aaaagtttttcatgattttttggaagatagcccaaaccggctttattataagttcccttt |
261 |
Q |
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||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
19692 |
aaaagtttttcatgattttttcgacgatagcccaaaccggctttattataagttcccttt |
19633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 2 - 261
Target Start/End: Complemental strand, 3276205 - 3275946
Alignment:
| Q |
2 |
tggcttttggtacccaaatcattttgggtcctagagagttagaattaggcaaagtgccctttggagtccacttccatttattattcatatcattgttctt |
101 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
3276205 |
tggcttttggtacccaaatcattttgggtccttgagagttagaattaggcaaagtgccctttggagtccacttccatttatcattcatatcattgttctt |
3276106 |
T |
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| Q |
102 |
tcttaaattacaaatagaagatgtatgaccttctcttccacaataaaaacatttaacaaaaggagaacttgaggttttgtttgggcgaaagaattttcga |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
3276105 |
tcttaaattacaaatagaagatgtatgaccttctcttccacaataaaaacatttaacaaaaggagaacttgaggttttgtttgggcgaaagaatttttga |
3276006 |
T |
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| Q |
202 |
aaaagtttttcatgattttttggaagatagcccaaaccggctttattataagttcccttt |
261 |
Q |
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||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
3276005 |
aaaagtttttcatgattttttcgacgatagcccaaaccggctttattataagttcccttt |
3275946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 5 - 261
Target Start/End: Original strand, 114253 - 114509
Alignment:
| Q |
5 |
cttttggtacccaaatcattttgggtcctagagagttagaattaggcaaagtgccctttggagtccacttccatttattattcatatcattgttctttct |
104 |
Q |
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||||||||||| ||||||||||||||||| |||||||| ||||||||||||||| |||| | ||||||||| ||||| ||||||| |||||||||||| |
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| T |
114253 |
cttttggtaccaaaatcattttgggtccttgagagttaacattaggcaaagtgccatttgaaatccacttccttttatcattcatactattgttctttct |
114352 |
T |
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| Q |
105 |
taaattacaaatagaagatgtatgaccttctcttccacaataaaaacatttaacaaaaggagaacttgaggttttgtttgggcgaaagaattttcgaaaa |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||| |||| |
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| T |
114353 |
caaattacaaatagaagatgtatgaccttctcttccacaataaaaacacttaacaaaaggagaacatgaagttttgtttgggcgaaagaattttctaaaa |
114452 |
T |
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| Q |
205 |
agtttttcatgattttttggaagatagcccaaaccggctttattataagttcccttt |
261 |
Q |
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|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
114453 |
agttttacatgattttttggatgatagcccaaaccggctttattataagttcccttt |
114509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 5 - 261
Target Start/End: Complemental strand, 14860085 - 14859829
Alignment:
| Q |
5 |
cttttggtacccaaatcattttgggtcctagagagttagaattaggcaaagtgccctttggagtccacttccatttattattcatatcattgttctttct |
104 |
Q |
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||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||| ||||||||| ||||| ||||||| |||||||||||| |
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| T |
14860085 |
cttttggtacccaaatcattttgggtccttgagagttagcattaggcaaagtgccatttggaatccacttccttttatcattcatactattgttctttct |
14859986 |
T |
|
| Q |
105 |
taaattacaaatagaagatgtatgaccttctcttccacaataaaaacatttaacaaaaggagaacttgaggttttgtttgggcgaaagaattttcgaaaa |
204 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||| |||| |
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| T |
14859985 |
caaattacaaatagaagatgtatgaccttctctttgacaataaaaacacttaacaaaaggagaactttaagttttgtttgggcgaaagaattttctaaaa |
14859886 |
T |
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| Q |
205 |
agtttttcatgattttttggaagatagcccaaaccggctttattataagttcccttt |
261 |
Q |
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||||||||||||| |||| || ||||||||||||||||||||||||||||||||||| |
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| T |
14859885 |
agtttttcatgatatttttgatgatagcccaaaccggctttattataagttcccttt |
14859829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 6 - 251
Target Start/End: Complemental strand, 24172332 - 24172086
Alignment:
| Q |
6 |
ttttggtacccaaatcattttgggtcctagagagttagaattaggcaaagtgccctttggagtccacttccatttattattcatatcattgttctttctt |
105 |
Q |
| |
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|||| ||||||||||||| ||||||| | | ||||||| ||| ||||||| | |||| | | ||||| | | | | ||||||| ||||||||||||| |
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| T |
24172332 |
tttttgtacccaaatcatcttgggtcattgtgagttagttatagacaaagtgtcatttgaaattcactttcttctctcattcataccattgttctttcta |
24172233 |
T |
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| Q |
106 |
aaattacaaatagaagatgtatgaccttctcttccacaataaaaacatttaacaaaaggagaacttgaggttttgtttggg-cgaaagaattttcgaaaa |
204 |
Q |
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| |||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||| ||||| |||||||||||||| ||||||| |||| || | |
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| T |
24172232 |
atattacaaatagaagatgtatgatcttctcttccacaataaaaatatttaacaatagggaaacttcaggttttgtttgggaagaaagaactttctaata |
24172133 |
T |
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| Q |
205 |
agtttttcatgattttttggaagatagcccaaaccggctttattata |
251 |
Q |
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||||||||||||||||||||| ||||||||||| ||| ||||||||| |
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| T |
24172132 |
agtttttcatgattttttggatgatagcccaaatcggttttattata |
24172086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 84 - 261
Target Start/End: Complemental strand, 8825578 - 8825402
Alignment:
| Q |
84 |
attcatatcattgttctttcttaaattacaaatagaagatgtatgaccttctcttccacaataaaaacatttaacaaaaggagaacttgaggttttgttt |
183 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||| || || ||| |
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| T |
8825578 |
attcatatcattgttctttcttaaattacaaatagaagatgtatgaccttctcttacacaataaaaacttttaacaaaaggggaacttgaagtcttattt |
8825479 |
T |
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| Q |
184 |
gggcgaaagaattttcgaaaaagtttttcatgattttttggaagatagcccaaaccggctttattataagttcccttt |
261 |
Q |
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||||||||||||||| | |||| |||||||||||||| ||| ||||||||||||||||||||||||||||| ||||| |
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| T |
8825478 |
gggcgaaagaatttt-gtaaaatattttcatgatttttcggatgatagcccaaaccggctttattataagtttccttt |
8825402 |
T |
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