View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7439_low_18 (Length: 273)
Name: NF7439_low_18
Description: NF7439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7439_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 25 - 255
Target Start/End: Complemental strand, 1827382 - 1827142
Alignment:
| Q |
25 |
ctttctttctggaagttcatcggatatgcttgattctttgactagagtgattgtgtgaatttgcgatcgattgtaaactgcagtct--ctctaacctgca |
122 |
Q |
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| T |
1827382 |
ctttctttctggaagttcatctgatatgcttgattctttgactagagtgattgtgtgaatttgcgatcgattgtaaactgcagtctctctctaacctgca |
1827283 |
T |
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| Q |
123 |
actcgactatcaacaaaccaaaggatgtcatggatctttgagtttcgacagtcac--------gagaagaggtatacatcgatataccatccttcacaac |
214 |
Q |
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| T |
1827282 |
actcgactatcaacaaaccaaaggatgtcatggatctttgagtttcgacagtcacgagaagaggagaagaggtatacatcgatataccatccttcacaac |
1827183 |
T |
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| Q |
215 |
tctctttggcctcctatgaaagagtatatatagaatgaaag |
255 |
Q |
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| T |
1827182 |
tctctttggcctcctatgaaagagtatatatagaatgaaag |
1827142 |
T |
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