View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7439_low_20 (Length: 267)

Name: NF7439_low_20
Description: NF7439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7439_low_20
NF7439_low_20
[»] chr6 (4 HSPs)
chr6 (9-246)||(13484093-13484332)
chr6 (161-244)||(13280531-13280614)
chr6 (160-218)||(30445364-30445422)
chr6 (160-217)||(30443156-30443213)
[»] scaffold0005 (2 HSPs)
scaffold0005 (143-244)||(170103-170204)
scaffold0005 (144-187)||(170213-170256)
[»] chr4 (6 HSPs)
chr4 (143-244)||(14647086-14647187)
chr4 (164-218)||(10979722-10979775)
chr4 (161-218)||(54929077-54929134)
chr4 (144-187)||(14647034-14647077)
chr4 (160-218)||(38209080-38209139)
chr4 (26-65)||(6095538-6095577)
[»] chr8 (6 HSPs)
chr8 (143-244)||(27818588-27818689)
chr8 (144-228)||(27819975-27820059)
chr8 (54-96)||(21006691-21006733)
chr8 (51-96)||(21836852-21836897)
chr8 (161-205)||(27820067-27820111)
chr8 (161-205)||(27818681-27818725)
[»] chr5 (4 HSPs)
chr5 (112-236)||(24510919-24511043)
chr5 (26-79)||(16842879-16842932)
chr5 (29-65)||(11755877-11755913)
chr5 (166-218)||(15143308-15143360)
[»] scaffold0809 (1 HSPs)
scaffold0809 (190-244)||(455-509)
[»] chr2 (5 HSPs)
chr2 (160-218)||(41304782-41304839)
chr2 (160-218)||(15693715-15693773)
chr2 (161-214)||(7502687-7502740)
chr2 (160-189)||(27583753-27583782)
chr2 (166-218)||(27583729-27583781)
[»] chr1 (5 HSPs)
chr1 (160-218)||(13785644-13785702)
chr1 (160-218)||(14352802-14352860)
chr1 (21-65)||(25123800-25123844)
chr1 (160-218)||(10115613-10115671)
chr1 (161-189)||(10115612-10115640)
[»] chr7 (5 HSPs)
chr7 (160-218)||(12310424-12310482)
chr7 (162-202)||(6628928-6628968)
chr7 (26-66)||(12484737-12484777)
chr7 (26-66)||(12506168-12506208)
chr7 (162-205)||(12657557-12657600)
[»] chr3 (6 HSPs)
chr3 (161-217)||(53973978-53974034)
chr3 (14-55)||(27716776-27716817)
chr3 (144-189)||(54287472-54287517)
chr3 (162-205)||(5535839-5535882)
chr3 (161-189)||(11066388-11066416)
chr3 (163-218)||(11066389-11066444)


Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 9 - 246
Target Start/End: Original strand, 13484093 - 13484332
Alignment:
Q  9 gacatcacatagagagatatacaaaataaagcacaaagcttaacaacgaaaccctaatgacgcaattcttcaatgcttgatttcgtgaattgaaactagg 108  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  13484093 gacatcacatagagagatatacaaaataaagcccaaaacttaacaacgaaaccctaatgactcaatttttcaatgcttgatttcgtgaattgaaactagg 13484192  T
Q  109 gtct--gccttctcaaatagccatccaagtgttggcctttttcttcaacatgccaaaatatatttgcatcaaatattccttcaagaaatatatttgcatt 206  Q
    ||||  ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  13484193 gtctaagccttctcaaatagccatccacgtgttggcctttttcttcaacatgccgaaatatatttgcatcaaatattccttcaagaaatatatttgcatt 13484292  T
Q  207 aaatcttccttctagaaacatacagtacaacaatatatct 246  Q
    || |||||||||||||||||||||||||||||||||||||    
T  13484293 aagtcttccttctagaaacatacagtacaacaatatatct 13484332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 161 - 244
Target Start/End: Complemental strand, 13280614 - 13280531
Alignment:
Q  161 aaaatatatttgcatcaaatattccttcaagaaatatatttgcattaaatcttccttctagaaacatacagtacaacaatatat 244  Q
    ||||||||||||| | |||| |||||| ||||||||||||||||| ||||||||||| || |||||||  |||||| |||||||    
T  13280614 aaaatatatttgcttaaaatcttccttaaagaaatatatttgcataaaatcttccttatataaacataaggtacaaaaatatat 13280531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 30445422 - 30445364
Alignment:
Q  160 caaaatatatttgcatcaaatattccttcaagaaatatatttgcattaaatcttccttc 218  Q
    ||||||||||  ||||||||||||||||    |||||||||||||| ||||||||||||    
T  30445422 caaaatatataggcatcaaatattcctttttaaaatatatttgcatcaaatcttccttc 30445364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 30443213 - 30443156
Alignment:
Q  160 caaaatatatttgcatcaaatattccttcaagaaatatatttgcattaaatcttcctt 217  Q
    ||||||||||||| |||||||||| |||  | ||||| |||||||| |||||||||||    
T  30443213 caaaatatatttgtatcaaatatttcttttaaaaatacatttgcatcaaatcttcctt 30443156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 143 - 244
Target Start/End: Complemental strand, 170204 - 170103
Alignment:
Q  143 ctttttcttcaacatgccaaaatatatttgcatcaaatattccttcaagaaatatatttgcattaaatcttccttctagaaacatacagtacaacaatat 242  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||| ||||||||||| ||||||||  | |||||| |||||    
T  170204 ctttttcttcaacatgccaaaatatatttacatcaaatattccttctagaaatttatttgcataaaatcttccttttagaaacacgcggtacaaaaatat 170105  T
Q  243 at 244  Q
    ||    
T  170104 at 170103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 187
Target Start/End: Complemental strand, 170256 - 170213
Alignment:
Q  144 tttttcttcaacatgccaaaatatatttgcatcaaatattcctt 187  Q
    |||| ||||||||||||||||||| |||||||||||||||||||    
T  170256 ttttccttcaacatgccaaaatatgtttgcatcaaatattcctt 170213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 143 - 244
Target Start/End: Original strand, 14647086 - 14647187
Alignment:
Q  143 ctttttcttcaacatgccaaaatatatttgcatcaaatattccttcaagaaatatatttgcattaaatcttccttctagaaacatacagtacaacaatat 242  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||| ||||||||||| ||||||||  | |||||| |||||    
T  14647086 ctttttcttcaacatgccaaaatatatttacatcaaatattccttctagaaatttatttgcataaaatcttccttttagaaacacgcggtacaaaaatat 14647185  T
Q  243 at 244  Q
    ||    
T  14647186 at 14647187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 164 - 218
Target Start/End: Complemental strand, 10979775 - 10979722
Alignment:
Q  164 atatatttgcatcaaatattccttcaagaaatatatttgcattaaatcttccttc 218  Q
    |||||||||||||||||||||||| || |||||||||||||| ||||||||||||    
T  10979775 atatatttgcatcaaatattcctttaa-aaatatatttgcatcaaatcttccttc 10979722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 218
Target Start/End: Original strand, 54929077 - 54929134
Alignment:
Q  161 aaaatatatttgcatcaaatattccttcaagaaatatatttgcattaaatcttccttc 218  Q
    ||||||||||||||||||||||||||   | |||||||||||||| ||||||||||||    
T  54929077 aaaatatatttgcatcaaatattcctattaaaaatatatttgcatcaaatcttccttc 54929134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 187
Target Start/End: Original strand, 14647034 - 14647077
Alignment:
Q  144 tttttcttcaacatgccaaaatatatttgcatcaaatattcctt 187  Q
    |||| ||||||||||||||||||| |||||||||||||||||||    
T  14647034 ttttccttcaacatgccaaaatatgtttgcatcaaatattcctt 14647077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 218
Target Start/End: Original strand, 38209080 - 38209139
Alignment:
Q  160 caaaatatatttgcatcaaatattcc--ttcaagaaatatatttgcattaaatcttccttc 218  Q
    ||||||||||||||||||||||||||  ||||| | |||||||||||| ||||||||||||    
T  38209080 caaaatatatttgcatcaaatattccttttcaa-atatatatttgcatcaaatcttccttc 38209139  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 65
Target Start/End: Complemental strand, 6095577 - 6095538
Alignment:
Q  26 tatacaaaataaagcacaaagcttaacaacgaaaccctaa 65  Q
    ||||||||||||| ||||||||||||||| ||||||||||    
T  6095577 tatacaaaataaaacacaaagcttaacaatgaaaccctaa 6095538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 143 - 244
Target Start/End: Original strand, 27818588 - 27818689
Alignment:
Q  143 ctttttcttcaacatgccaaaatatatttgcatcaaatattccttcaagaaatatatttgcattaaatcttccttctagaaacatacagtacaacaatat 242  Q
    ||||||||||||||||||||||||||  |||||||||| || |||| ||||||||||||||||  ||| |||||||||||||||||  |||||| |||||    
T  27818588 ctttttcttcaacatgccaaaatatacgtgcatcaaatctttcttctagaaatatatttgcatcgaattttccttctagaaacatatggtacaaaaatat 27818687  T
Q  243 at 244  Q
    ||    
T  27818688 at 27818689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 144 - 228
Target Start/End: Original strand, 27819975 - 27820059
Alignment:
Q  144 tttttcttcaacatgccaaaatatatttgcatcaaatattccttcaagaaatatatttgcattaaatcttccttctagaaacata 228  Q
    |||||||||||||||||||||||||  ||||||||||  |||||| |||||||||||||||| |||| |||||||||||||||||    
T  27819975 tttttcttcaacatgccaaaatatacgtgcatcaaatcgtccttctagaaatatatttgcatcaaattttccttctagaaacata 27820059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 96
Target Start/End: Complemental strand, 21006733 - 21006691
Alignment:
Q  54 acgaaaccctaatgacgcaattcttcaatgcttgatttcgtga 96  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  21006733 acgaaaccctaatgactcaattcttcaatgcttgatttcgtga 21006691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 96
Target Start/End: Complemental strand, 21836897 - 21836852
Alignment:
Q  51 acaacgaaaccctaatgacgcaattcttcaatgcttgatttcgtga 96  Q
    |||||||||| |||||||| ||||||||||||||||||||| ||||    
T  21836897 acaacgaaactctaatgactcaattcttcaatgcttgattttgtga 21836852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 205
Target Start/End: Original strand, 27820067 - 27820111
Alignment:
Q  161 aaaatatatttgcatcaaatattccttcaagaaatatatttgcat 205  Q
    ||||||||||||||||||||||| |||| | ||||||||||||||    
T  27820067 aaaatatatttgcatcaaatatttcttccaaaaatatatttgcat 27820111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 205
Target Start/End: Original strand, 27818681 - 27818725
Alignment:
Q  161 aaaatatatttgcatcaaatattccttcaagaaatatatttgcat 205  Q
    |||||||||||||||||||| || |||| | ||||||||||||||    
T  27818681 aaaatatatttgcatcaaatctttcttccaaaaatatatttgcat 27818725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 112 - 236
Target Start/End: Original strand, 24510919 - 24511043
Alignment:
Q  112 tgccttctcaaatagccatccaagtgttggcctttttcttcaacatgccaaaatatatttgcatcaaatattccttcaagaaatatatttgcattaaatc 211  Q
    ||||| || |||||||||||||  || | | |||||||  ||||| |||||||||||||| |||||||||||||||| |||| ||||||||||| |||||    
T  24510919 tgcctccttaaatagccatccacatgctaggctttttccacaacaggccaaaatatattttcatcaaatattccttctagaagtatatttgcatcaaatc 24511018  T
Q  212 ttccttctagaaacatacagtacaa 236  Q
    ||  ||||| |||||||| ||||||    
T  24511019 tttattctataaacatacggtacaa 24511043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 16842879 - 16842932
Alignment:
Q  26 tatacaaaataaagcacaaagcttaacaacgaaaccctaatgacgcaattcttc 79  Q
    |||||||||||||  |||||||||||||| |||||||||||||| |||||||||    
T  16842879 tatacaaaataaaagacaaagcttaacaatgaaaccctaatgactcaattcttc 16842932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 65
Target Start/End: Complemental strand, 11755913 - 11755877
Alignment:
Q  29 acaaaataaagcacaaagcttaacaacgaaaccctaa 65  Q
    |||||||||||||||| ||||||||| ||||||||||    
T  11755913 acaaaataaagcacaaggcttaacaatgaaaccctaa 11755877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 218
Target Start/End: Complemental strand, 15143360 - 15143308
Alignment:
Q  166 atatttgcatcaaatattccttcaagaaatatatttgcattaaatcttccttc 218  Q
    |||||||||||||||||||| |    |||||||||||||| ||||||||||||    
T  15143360 atatttgcatcaaatattccctttcaaaatatatttgcatcaaatcttccttc 15143308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0809 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0809
Description:

Target: scaffold0809; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 190 - 244
Target Start/End: Original strand, 455 - 509
Alignment:
Q  190 agaaatatatttgcattaaatcttccttctagaaacatacagtacaacaatatat 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  455 agaaatatatttgcattaaatcttccttctagaaacatacagtacaaaaatatat 509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 160 - 218
Target Start/End: Original strand, 41304782 - 41304839
Alignment:
Q  160 caaaatatatttgcatcaaatattccttcaagaaatatatttgcattaaatcttccttc 218  Q
    |||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||    
T  41304782 caaaatatatttgcatcaaatattcctttaa-aaatatatttgcatcaaatcttccttc 41304839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 15693773 - 15693715
Alignment:
Q  160 caaaatatatttgcatcaaatattccttcaagaaatatatttgcattaaatcttccttc 218  Q
    ||||||||||||||||||||||| || |  | |||||||||||||| ||||||||||||    
T  15693773 caaaatatatttgcatcaaatatcccctttaaaaatatatttgcatcaaatcttccttc 15693715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 214
Target Start/End: Complemental strand, 7502740 - 7502687
Alignment:
Q  161 aaaatatatttgcatcaaata-ttccttcaagaaatatatttgcattaaatcttc 214  Q
    ||||||||||||||||||||| |||||| || |||||||||||||| ||||||||    
T  7502740 aaaatatatttgcatcaaatatttcctttaa-aaatatatttgcatcaaatcttc 7502687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 189
Target Start/End: Original strand, 27583753 - 27583782
Alignment:
Q  160 caaaatatatttgcatcaaatattccttca 189  Q
    ||||||||||||||||||||||||||||||    
T  27583753 caaaatatatttgcatcaaatattccttca 27583782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 218
Target Start/End: Original strand, 27583729 - 27583781
Alignment:
Q  166 atatttgcatcaaatattccttcaagaaatatatttgcattaaatcttccttc 218  Q
    ||||||||||||||||||||||    |||||||||||||| |||| |||||||    
T  27583729 atatttgcatcaaatattccttttcaaaatatatttgcatcaaatattccttc 27583781  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 160 - 218
Target Start/End: Original strand, 13785644 - 13785702
Alignment:
Q  160 caaaatatatttgcatcaaatattccttcaagaaatatatttgcattaaatcttccttc 218  Q
    ||||||||||||||||||||||||||||  | |||||||||||||| ||||||||||||    
T  13785644 caaaatatatttgcatcaaatattccttttaaaaatatatttgcatcaaatcttccttc 13785702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 14352860 - 14352802
Alignment:
Q  160 caaaatatatttgcatcaaatattccttcaagaaatatatttgcattaaatcttccttc 218  Q
    |||||||||||||||||||||||||| |  | |||||||||||||| ||||||||||||    
T  14352860 caaaatatatttgcatcaaatattccctttaaaaatatatttgcatcaaatcttccttc 14352802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 25123800 - 25123844
Alignment:
Q  21 agagatatacaaaataaagcacaaagcttaacaacgaaaccctaa 65  Q
    |||| |||||||||||||||||||||||| |||||||||||||||    
T  25123800 agaggtatacaaaataaagcacaaagcttgacaacgaaaccctaa 25123844  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 10115671 - 10115613
Alignment:
Q  160 caaaatatatttgcatcaaatattccttcaagaaatatatttgcattaaatcttccttc 218  Q
    ||||| |||||||||||||||||||| |  | |||||||||||||| |||| |||||||    
T  10115671 caaaaaatatttgcatcaaatattccgtttaaaaatatatttgcatcaaatattccttc 10115613  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 189
Target Start/End: Complemental strand, 10115640 - 10115612
Alignment:
Q  161 aaaatatatttgcatcaaatattccttca 189  Q
    |||||||||||||||||||||||||||||    
T  10115640 aaaatatatttgcatcaaatattccttca 10115612  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 160 - 218
Target Start/End: Original strand, 12310424 - 12310482
Alignment:
Q  160 caaaatatatttgcatcaaatattccttcaagaaatatatttgcattaaatcttccttc 218  Q
    ||||||||||||||||||||||||||||  | |||||||||| ||| ||||||||||||    
T  12310424 caaaatatatttgcatcaaatattccttttaaaaatatatttacatcaaatcttccttc 12310482  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 202
Target Start/End: Complemental strand, 6628968 - 6628928
Alignment:
Q  162 aaatatatttgcatcaaatattccttcaagaaatatatttg 202  Q
    ||||||||||||||||||||||||||| | |||||||||||    
T  6628968 aaatatatttgcatcaaatattccttccataaatatatttg 6628928  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 12484737 - 12484777
Alignment:
Q  26 tatacaaaataaagcacaaagcttaacaacgaaaccctaat 66  Q
    ||||||||||||||||||| ||||||||| |||||||||||    
T  12484737 tatacaaaataaagcacaaggcttaacaatgaaaccctaat 12484777  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 12506168 - 12506208
Alignment:
Q  26 tatacaaaataaagcacaaagcttaacaacgaaaccctaat 66  Q
    ||||||||||||||||||| ||||||||| |||||||||||    
T  12506168 tatacaaaataaagcacaaggcttaacaatgaaaccctaat 12506208  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 205
Target Start/End: Original strand, 12657557 - 12657600
Alignment:
Q  162 aaatatatttgcatcaaatattccttcaagaaatatatttgcat 205  Q
    ||||||||||||||||||||||||||| | |||||||| |||||    
T  12657557 aaatatatttgcatcaaatattccttccataaatatatgtgcat 12657600  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 161 - 217
Target Start/End: Original strand, 53973978 - 53974034
Alignment:
Q  161 aaaatatatttgcatcaaatattccttcaagaaatatatttgcattaaatcttcctt 217  Q
    |||||||||||||||||||||||| ||| | | |||||||||||| |||||||||||    
T  53973978 aaaatatatttgcatcaaatattctttccaaatatatatttgcatcaaatcttcctt 53974034  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 27716776 - 27716817
Alignment:
Q  14 cacatagagagatatacaaaataaagcacaaagcttaacaac 55  Q
    ||||||||||| | ||||||||||||||||||||||||||||    
T  27716776 cacatagagaggtttacaaaataaagcacaaagcttaacaac 27716817  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 189
Target Start/End: Original strand, 54287472 - 54287517
Alignment:
Q  144 tttttcttcaacatgccaaaatatatttgcatcaaatattccttca 189  Q
    |||| |||||||| | ||||||||||||||||||||||||||||||    
T  54287472 ttttccttcaacaggtcaaaatatatttgcatcaaatattccttca 54287517  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 205
Target Start/End: Original strand, 5535839 - 5535882
Alignment:
Q  162 aaatatatttgcatcaaatattccttcaagaaatatatttgcat 205  Q
    |||||||||| |||||||||||||||| | ||||||||||||||    
T  5535839 aaatatattttcatcaaatattccttccataaatatatttgcat 5535882  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 189
Target Start/End: Complemental strand, 11066416 - 11066388
Alignment:
Q  161 aaaatatatttgcatcaaatattccttca 189  Q
    |||||||||||||||||||||||||||||    
T  11066416 aaaatatatttgcatcaaatattccttca 11066388  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 218
Target Start/End: Complemental strand, 11066444 - 11066389
Alignment:
Q  163 aatatatttgcatcaaatattc-cttcaagaaatatatttgcattaaatcttccttc 218  Q
    |||||||||||||||||||||| ||| || |||||||||||||| |||| |||||||    
T  11066444 aatatatttgcatcaaatattctctttaa-aaatatatttgcatcaaatattccttc 11066389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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