View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7439_low_25 (Length: 227)
Name: NF7439_low_25
Description: NF7439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7439_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 149; Significance: 7e-79; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 5 - 173
Target Start/End: Complemental strand, 374927 - 374759
Alignment:
| Q |
5 |
gtatacaatttctaaccttcttatttgaaagattcatcgatttctaagtcttctcaaacatgacgatttcactccaaacgagtttcacttgtaattgtag |
104 |
Q |
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| T |
374927 |
gtatacaatttctaaccttcttatttgaaagatccatcgatttctaagtcttctcaaacatgacgatttcactccaaacgagttttacttgtaattgtag |
374828 |
T |
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| Q |
105 |
cgaacaagagggtaatgagatcaacacccactaatacaaacctaggttccatcaaaaacaaattcgtac |
173 |
Q |
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| T |
374827 |
cgaacaagagggtaatgagatcatcacccactaatacaaacataggttccatccaaaacaaattcgtac |
374759 |
T |
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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 367913 - 367855
Alignment:
| Q |
5 |
gtatacaatttctaaccttcttatttgaaagattcatcgatttctaagtcttctcaaac |
63 |
Q |
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| T |
367913 |
gtatagaatttctaaccttctcatttgaaagggccattgatttcttagtcttctcaaac |
367855 |
T |
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