View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7439_low_4 (Length: 434)
Name: NF7439_low_4
Description: NF7439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7439_low_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 383; Significance: 0; HSPs: 12)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 18 - 424
Target Start/End: Complemental strand, 38865299 - 38864893
Alignment:
| Q |
18 |
actcccctgttttaacaaacaataaccataattcaacagactcatatttcggagctcgtgaattcgattcaaatgttataatgatacttgcagttttatt |
117 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38865299 |
actcccatgttttaacaaataataaccataattcaacagactcatattttggagctcgtgaattcgattcaaatgttataatgatacttgcagttttatt |
38865200 |
T |
|
| Q |
118 |
gtgtgctcttatttgctcacttgcattaaactccatcataaggtgtggtttaaggttttctaacgtagccctacacaacgacccttctttgagttcgagc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38865199 |
gtgtgctcttatttgctcacttgcattaaactccatcataaggtgtggtttaaggttttctaacgtagccctacacaacgacccttctttgagttcgagc |
38865100 |
T |
|
| Q |
218 |
aacaaaggaatcaagaagaaagctctcaaaacattccccacagtgagctattcagctgagttgaaacttccaagtttggatgcagagtgtattatatgtc |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
38865099 |
aacaaaggaatcaagaagaaagctctcaaaacattccccacagtgagctattcagctgagttgaaacttccaagtttggatacagagtgtattatatgtc |
38865000 |
T |
|
| Q |
318 |
tctcagagtttacaaagggtgaaaaggtgcgcattttgcctaaatgcaaccatggatttcacgttcgttgcattgacaaatggctaaaggaacactcatg |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
38864999 |
tctcagagtttacaaagggtgaaaaggtgcgcattttgcctaaatgcaaccatggatttcacgttcgttgcattgacaaatggctaaaggaacacccatc |
38864900 |
T |
|
| Q |
418 |
atgtcca |
424 |
Q |
| |
|
||||||| |
|
|
| T |
38864899 |
atgtcca |
38864893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 424
Target Start/End: Original strand, 38850679 - 38851078
Alignment:
| Q |
19 |
ctcccctgttttaacaaacaataaccataattcaacagactcatatttcggagctcgtgaattcgattcaaatgttataatgatacttgcagttttattg |
118 |
Q |
| |
|
||||||||| |||||||||||| || ||||||||||||||| |||| |||||||||||||| |||||||||||| | |||||| ||||||| |||| |
|
|
| T |
38850679 |
ctcccctgtgttaacaaacaatcac---aattcaacagactcaaattttggagctcgtgaatttgattcaaatgttgtgatgatagttgcagtcctatta |
38850775 |
T |
|
| Q |
119 |
tgtgctcttatttgctcacttgcattaaactccatcataaggtgtggtttaaggttttctaacgtagccctacacaacgacccttctttgagttcgagca |
218 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||| || ||||| | | || | || | || |
|
|
| T |
38850776 |
tgtgcttttatttgctcacttgcattaaactccatcataaggtgtgccttaagggtttcaaacgtagccataaacaacaattcacctc--aattggt-ca |
38850872 |
T |
|
| Q |
219 |
acaaaggaatcaagaagaaagctctcaaaacattccccacagtgagctattcagctgagttgaaacttccaagtttggatgcagagtgtattatatgtct |
318 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||| || ||| |||||||||| | |||||||| || |||||||||||| |||| ||||| |||||||| |
|
|
| T |
38850873 |
acaaaggaatcaagaagaaagctctcaagaaatttcctacaatgagctattccaccgagttgaatctaccaagtttggatacagattgtatgatatgtct |
38850972 |
T |
|
| Q |
319 |
ctcagagtttacaaagggtgaaaaggtgcgcattttgcctaaatgcaaccatggatttcacgttcgttgcattgacaaatggctaaaggaacactcatga |
418 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||| | |
|
|
| T |
38850973 |
ctcagagttcacaaagggtgaaaaattgcgcattttgcctaaatgcaaccatggatttcatgttcgttgcattgacaaatggctaaaagaacattcatca |
38851072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 221 - 424
Target Start/End: Complemental strand, 38841029 - 38840826
Alignment:
| Q |
221 |
aaaggaatcaagaagaaagctctcaaaacattccccacagtgagctattcagctgagttgaaacttccaagtttggatgcagagtgtattatatgtctct |
320 |
Q |
| |
|
||||||||||||||||||||||| || |||| |||||||||||||| ||| |||| |||||||| ||||||||||| ||||| ||||| |||||||||| |
|
|
| T |
38841029 |
aaaggaatcaagaagaaagctcttaaggcatttcccacagtgagctactcaactgacttgaaactaccaagtttggacgcagaatgtatgatatgtctct |
38840930 |
T |
|
| Q |
321 |
cagagtttacaaagggtgaaaaggtgcgcattttgcctaaatgcaaccatggatttcacgttcgttgcattgacaaatggctaaaggaacactcatgatg |
420 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||| ||| |
|
|
| T |
38840929 |
cagagttcacaaagggtgaaaaggtgcgcattttgcctaaatgcaaccatggatttcatgttcgttgcattgacaaatggctaaaagaacattcatcatg |
38840830 |
T |
|
| Q |
421 |
tcca |
424 |
Q |
| |
|
|||| |
|
|
| T |
38840829 |
tcca |
38840826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 221 - 424
Target Start/End: Complemental strand, 38858767 - 38858564
Alignment:
| Q |
221 |
aaaggaatcaagaagaaagctctcaaaacattccccacagtgagctattcagctgagttgaaacttccaagtttggatgcagagtgtattatatgtctct |
320 |
Q |
| |
|
||||||||||||||||||||||| || |||| |||||||||||||| ||| |||| |||||||| ||||||||||| ||||| ||||| |||||||||| |
|
|
| T |
38858767 |
aaaggaatcaagaagaaagctcttaaggcatttcccacagtgagctactcaactgacttgaaactaccaagtttggacgcagaatgtatgatatgtctct |
38858668 |
T |
|
| Q |
321 |
cagagtttacaaagggtgaaaaggtgcgcattttgcctaaatgcaaccatggatttcacgttcgttgcattgacaaatggctaaaggaacactcatgatg |
420 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||| ||| |
|
|
| T |
38858667 |
cagagttcacaaagggtgaaaaggtgcgcattttgcctaaatgcaaccatggatttcatgttcgttgcattgacaaatggctaaaagaacattcatcatg |
38858568 |
T |
|
| Q |
421 |
tcca |
424 |
Q |
| |
|
|||| |
|
|
| T |
38858567 |
tcca |
38858564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 217 - 424
Target Start/End: Complemental strand, 38861645 - 38861438
Alignment:
| Q |
217 |
caacaaaggaatcaagaagaaagctctcaaaacattccccacagtgagctattcagctgagttgaaacttccaagtttggatgcagagtgtattatatgt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||| || ||| |||||||||| | |||||||| || |||||||||||| |||| ||||| |||||| |
|
|
| T |
38861645 |
caacaaaggaatcaagaagaaagctctcaagaaatttcctacaatgagctattccaccgagttgaatctaccaagtttggatacagattgtatgatatgt |
38861546 |
T |
|
| Q |
317 |
ctctcagagtttacaaagggtgaaaaggtgcgcattttgcctaaatgcaaccatggatttcacgttcgttgcattgacaaatggctaaaggaacactcat |
416 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
38861545 |
ctctcagagttcacaaagggtgaaaaattgcgcattttgcctaaatgcaaccatggatttcatgttcgttgcattgacaaatggctaaaagaacattcat |
38861446 |
T |
|
| Q |
417 |
gatgtcca |
424 |
Q |
| |
|
||||||| |
|
|
| T |
38861445 |
catgtcca |
38861438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 217 - 405
Target Start/End: Complemental strand, 38846853 - 38846665
Alignment:
| Q |
217 |
caacaaaggaatcaagaagaaagctctcaaaacattccccacagtgagctattcagctgagttgaaacttccaagtttggatgcagagtgtattatatgt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| ||||| || |||||| ||||||||||||| |||| ||||||| |||||||| | |||||| |
|
|
| T |
38846853 |
caacaaaggaatcaagaagaaagctctcaagacattcccaacagtaagttattcaactgagttgaaactaccaactttggatacagagtgtgtgatatgt |
38846754 |
T |
|
| Q |
317 |
ctctcagagtttacaaagggtgaaaaggtgcgcattttgcctaaatgcaaccatggatttcacgttcgttgcattgacaaatggctaaa |
405 |
Q |
| |
|
|||||||| || ||||| |||||||||||||||||||||||||||||||| ||||| || || ||||||||||| |||||||||||||| |
|
|
| T |
38846753 |
ctctcagaattcacaaaaggtgaaaaggtgcgcattttgcctaaatgcaatcatggtttccatgttcgttgcatcgacaaatggctaaa |
38846665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 218 - 405
Target Start/End: Complemental strand, 38827244 - 38827057
Alignment:
| Q |
218 |
aacaaaggaatcaagaagaaagctctcaaaacattccccacagtgagctattcagctgagttgaaacttccaagtttggatgcagagtgtattatatgtc |
317 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| || ||||| || |||||| ||||||| ||||| |||| ||||||| |||||||| | ||||||| |
|
|
| T |
38827244 |
aacaaaggaatcaagaagaaagctctcaagacatttccaacagtaagttattcaactgagttaaaactaccaactttggatacagagtgtgtgatatgtc |
38827145 |
T |
|
| Q |
318 |
tctcagagtttacaaagggtgaaaaggtgcgcattttgcctaaatgcaaccatggatttcacgttcgttgcattgacaaatggctaaa |
405 |
Q |
| |
|
||||||| || ||||| |||||||||||||||||||||||||||||||| ||||| || || ||||||||||| |||||||||||||| |
|
|
| T |
38827144 |
tctcagaattcacaaaaggtgaaaaggtgcgcattttgcctaaatgcaatcatggtttccatgttcgttgcatcgacaaatggctaaa |
38827057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 41 - 218
Target Start/End: Complemental strand, 38827445 - 38827268
Alignment:
| Q |
41 |
aaccataattcaacagactcatatttcggagctcgtgaattcgattcaaatgttataatgatacttgcagttttattgtgtgctcttatttgctcacttg |
140 |
Q |
| |
|
|||||||||||||| |||||||||| ||| ||||||||| ||| |||||||| | ||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
38827445 |
aaccataattcaactaactcatattttggaattcgtgaatttgatgcaaatgttgtgatgatacttgcagttctattgtgtgctcttatttgctcacttg |
38827346 |
T |
|
| Q |
141 |
cattaaactccatcataaggtgtggtttaaggttttctaacgtagccctacacaacgacccttctttgagttcgagca |
218 |
Q |
| |
|
| |||||||| ||||||||||| | |||||||||||||||||||||||| |||||| | |||||| ||||||||||| |
|
|
| T |
38827345 |
ccttaaactcgatcataaggtgcgccttaaggttttctaacgtagccctaaacaacggctcttcttcgagttcgagca |
38827268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 18 - 205
Target Start/End: Complemental strand, 38841250 - 38841066
Alignment:
| Q |
18 |
actcccctgttttaacaaacaataaccataattcaacagactcatatttcggagctcgtgaattcgattcaaatgttataatgatacttgcagttttatt |
117 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||||||| |||| |||| ||||||||| |||||||| ||| | |||||||||||||| |||| |
|
|
| T |
38841250 |
actcccctactttaacaaacaa---ccataattcaacagactcaaattttggagatcgtgaatttgattcaaaagttgtgatgatacttgcagtcatatt |
38841154 |
T |
|
| Q |
118 |
gtgtgctcttatttgctcacttgcattaaactccatcataaggtgtggtttaaggttttctaacgtagccctacacaacgacccttct |
205 |
Q |
| |
|
|||| | |||||||||||||||||||||||||||| || ||||||| ||||||||||| ||||||||| | |||||||| ||||| |
|
|
| T |
38841153 |
atgtgtttttatttgctcacttgcattaaactccattatcaggtgtgccttaaggttttcaaacgtagccatcaacaacgactcttct |
38841066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 47 - 163
Target Start/End: Complemental strand, 38858956 - 38858840
Alignment:
| Q |
47 |
aattcaacagactcatatttcggagctcgtgaattcgattcaaatgttataatgatacttgcagttttattgtgtgctcttatttgctcacttgcattaa |
146 |
Q |
| |
|
|||||||| |||||| | ||||||||||||||||| |||||| ||||| | |||||| |||||||| |||| |||||| ||||||| | ||||| ||||| |
|
|
| T |
38858956 |
aattcaaccgactcaaagttcggagctcgtgaatttgattcagatgttgtgatgataattgcagttctattatgtgcttttatttgtttacttgtattaa |
38858857 |
T |
|
| Q |
147 |
actccatcataaggtgt |
163 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
38858856 |
actccatcataaggtgt |
38858840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 38 - 222
Target Start/End: Complemental strand, 38861848 - 38861664
Alignment:
| Q |
38 |
aataaccataattcaacagactcatatttcggagctcgtgaattcgattcaaatgttataatgatacttgcagttttattgtgtgctcttatttgctcac |
137 |
Q |
| |
|
|||| ||| |||||||| ||||||||||| |||||| |||||| |||||||||||| | ||||||||||||||| |||| |||||| ||||| | | | |
|
|
| T |
38861848 |
aatagccacaattcaaccgactcatattttagagctcctgaatttgattcaaatgttgtgatgatacttgcagttgtattatgtgcttttattggtcccc |
38861749 |
T |
|
| Q |
138 |
ttgcattaaactccatcataaggtgtggtttaaggttttctaacgtagccctacacaacgacccttctttgagttcgagcaacaa |
222 |
Q |
| |
|
|||||||||||| ||||||||| ||| |||| |||| || |||||||| |||||||| |||||| |||||| |||||||| |
|
|
| T |
38861748 |
ttgcattaaactttatcataaggcgtgccttaatatttttaaatgtagccctcaacaacgactcttcttcgagttcaagcaacaa |
38861664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 47 - 164
Target Start/End: Complemental strand, 38847038 - 38846921
Alignment:
| Q |
47 |
aattcaacagactcatatttcggagctcgtgaattcgattcaaatgttataatgatacttgcagttttattgtgtgctcttatttgctcacttgcattaa |
146 |
Q |
| |
|
|||||||| |||| ||||| ||||||||||| || || ||||||||| | |||||| || | || ||||||||||| ||||||||||| ||||||||| |
|
|
| T |
38847038 |
aattcaactaactcgtattttggagctcgtgagtttgaatcaaatgttgtgatgatagtttctgtcctattgtgtgctattatttgctcaattgcattaa |
38846939 |
T |
|
| Q |
147 |
actccatcataaggtgtg |
164 |
Q |
| |
|
||||||| ||||||||| |
|
|
| T |
38846938 |
actccattgtaaggtgtg |
38846921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 224 - 404
Target Start/End: Complemental strand, 43666239 - 43666059
Alignment:
| Q |
224 |
ggaatcaagaagaaagctctcaaaacattccccacagtgagctattcagctgagttgaaacttccaagtttggatgcagagtgtattatatgtctctcag |
323 |
Q |
| |
|
||||||||||||||||||||||| | |||| ||||||| || || |||| |||| ||||| | || |||||||| | |||||| | |||||||| || | |
|
|
| T |
43666239 |
ggaatcaagaagaaagctctcaagaaattcaccacagttagttactcagatgagctgaaattgccgagtttggactcggagtgtgtgatatgtctgtcgg |
43666140 |
T |
|
| Q |
324 |
agtttacaaagggtgaaaaggtgcgcattttgcctaaatgcaaccatggatttcacgttcgttgcattgacaaatggctaa |
404 |
Q |
| |
|
|||| || || || || || |||||| ||||||| || || |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
43666139 |
agttcactaacggcgataaagtgcgccttttgccaaagtgtaaccatggatttcatgttcgttgcattgacaaatggctaa |
43666059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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