View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7439_low_5 (Length: 410)
Name: NF7439_low_5
Description: NF7439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7439_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 2 - 393
Target Start/End: Original strand, 23040981 - 23041372
Alignment:
| Q |
2 |
gtatattgtttatatctctaatttcctttgttattttaattctttagtaagtttaattaattgtttgaaactgtcattgttagggaaagagcctttcaga |
101 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23040981 |
gtatattgtttatatctctaatttcctttgttattttaattctttagtaagtttaattaattgtttgaaactgtcattgttagggaaagagcctttcaga |
23041080 |
T |
|
| Q |
102 |
gcatgaattaccgcctcataagttgtacccgttgattagtgctgctggtgccaaacttgatcatgtgtcagcggtagaagcgtaagaatagcttttgcgt |
201 |
Q |
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||||||| |||||| ||||||||||| || |||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
23041081 |
gcatgaactaccgcggcataagttgtatccattgattagtgctgctgatgccaaatttgatcatgtgtcaacggtagaagcgtaagaatagcttttgcgt |
23041180 |
T |
|
| Q |
202 |
agttgtctatcggcttgatcttgtaacctaaagtaacaaattttcaaatgattatttcattttatgtagcctcttgtgcattaatggatctcttgattct |
301 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23041181 |
agttgtctatcggcttgatcttgtaacctaaagtaacaaattttcaaatgattatttcattttatgtagcctcttgtgcattaatggatctcttgattct |
23041280 |
T |
|
| Q |
302 |
cataaagcaaagggaaaaatattggtatgtcttcgaggtaacaatggtagagttaaaaagggtgtagaagcttctcgagtaggtgctgttgg |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23041281 |
cataaagcaaagggaaaaatattggtatgtcttcgaggtaacaatggtagagttaaaaagggtgtagaagcttctcgagtaggtgctgttgg |
23041372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 151; Significance: 9e-80; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 2 - 191
Target Start/End: Complemental strand, 42743493 - 42743299
Alignment:
| Q |
2 |
gtatattgtttatatctctaatttcctttgttattttaattcttta-----gtaagtttaattaattgtttgaaactgtcattgttagggaaagagcctt |
96 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||| |
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| T |
42743493 |
gtatattgtttatatctctaatttcctttgttattttaattctttaatttagtaagtttaattaattgtttgaaattgtcattgttagggagagagcctt |
42743394 |
T |
|
| Q |
97 |
tcagagcatgaattaccgcctcataagttgtacccgttgattagtgctgctggtgccaaacttgatcatgtgtcagcggtagaagcgtaagaata |
191 |
Q |
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|
||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
42743393 |
tcagagcatgaattaccgcctcataagttgtacccattgattagtgctgctgatgccaaatttgatcatgtgtcagcgggagaagcgtaagaata |
42743299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 2 - 191
Target Start/End: Complemental strand, 42752852 - 42752658
Alignment:
| Q |
2 |
gtatattgtttatatctctaatttcctttgttattttaattcttta-----gtaagtttaattaattgtttgaaactgtcattgttagggaaagagcctt |
96 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||| |
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| T |
42752852 |
gtatattgtttatatctctaatttcctttgttattttaattctttaatttagtaagtttaattaattgtttgaaattgtcattgttagggagagagcctt |
42752753 |
T |
|
| Q |
97 |
tcagagcatgaattaccgcctcataagttgtacccgttgattagtgctgctggtgccaaacttgatcatgtgtcagcggtagaagcgtaagaata |
191 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
42752752 |
tcagagcatgaattaccgcctcataagttgtacccattgattagtgctgctgatgccaaatttgatcatgtgtcagcgggagaagcgtaagaata |
42752658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 242 - 393
Target Start/End: Complemental strand, 42743195 - 42743044
Alignment:
| Q |
242 |
ttttcaaatgattatttcattttatgtagcctcttgtgcattaatggatctcttgattctcataaagcaaagggaaaaatattggtatgtcttcgaggta |
341 |
Q |
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||||||||||||||||| |||||||| |||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
42743195 |
ttttcaaatgattattttattttatgcagcctcctttgcattaatgggtctcttgattctcataaagcaaagggaaaaatattggtatgtcttctaggta |
42743096 |
T |
|
| Q |
342 |
acaatggtagagttaaaaagggtgtagaagcttctcgagtaggtgctgttgg |
393 |
Q |
| |
|
||||| |||||||| | |||||||| ||||||||||| |||||||||||||| |
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| T |
42743095 |
acaatagtagagttgacaagggtgtggaagcttctcgtgtaggtgctgttgg |
42743044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 242 - 393
Target Start/End: Complemental strand, 42752554 - 42752403
Alignment:
| Q |
242 |
ttttcaaatgattatttcattttatgtagcctcttgtgcattaatggatctcttgattctcataaagcaaagggaaaaatattggtatgtcttcgaggta |
341 |
Q |
| |
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||||||||||||||||| |||||||| |||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
42752554 |
ttttcaaatgattattttattttatgcagcctcctttgcattaatgggtctcttgattctcataaagcaaagggaaaaatattggtatgtcttctaggta |
42752455 |
T |
|
| Q |
342 |
acaatggtagagttaaaaagggtgtagaagcttctcgagtaggtgctgttgg |
393 |
Q |
| |
|
||||| |||||||| | |||||||| ||||||||||| |||||||||||||| |
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| T |
42752454 |
acaatagtagagttgacaagggtgtggaagcttctcgtgtaggtgctgttgg |
42752403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 10 - 199
Target Start/End: Complemental strand, 42762308 - 42762119
Alignment:
| Q |
10 |
tttatatctctaatttcctttgttattttaat-tctttagtaagtttaattaattgtttgaaactgtcattgttagggaaagagcctttcagagcatgaa |
108 |
Q |
| |
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||||||||||||| |||||||||||||||||| | ||||||||| ||||||| |||||||||| | | ||||||||||| ||||||||||||| |||| |
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| T |
42762308 |
tttatatctctaacttcctttgttattttaatatttttagtaaggttaattacttgtttgaaatttttattgttagggagctagcctttcagagcttgaa |
42762209 |
T |
|
| Q |
109 |
ttaccgcctcataagttgtacccgttgattagtgctgctggtgccaaacttgatcatgtgtcagcggtagaagcgtaagaatagcttttgc |
199 |
Q |
| |
|
||||| ||||||||||||||||| ||||| |||||||||| || |||| ||||||||||||| || | || |||||||||| |||||||| |
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| T |
42762208 |
ttaccacctcataagttgtacccattgataagtgctgctgatgtcaaatttgatcatgtgtctgcagaggatgcgtaagaat-gcttttgc |
42762119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 285 - 393
Target Start/End: Complemental strand, 42761979 - 42761871
Alignment:
| Q |
285 |
atggatctcttgattctcataaagcaaagggaaaaatattggtatgtcttcgaggtaacaatggtagagttaaaaagggtgtagaagcttctcgagtagg |
384 |
Q |
| |
|
||||| |||||||| | ||||| ||||||||||||||||||||||||||||||||| ||| | ||||||| | |||||||| ||||||||||| ||||| |
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| T |
42761979 |
atggagctcttgatccacataaggcaaagggaaaaatattggtatgtcttcgaggtgacagtaatagagttgacaagggtgtggaagcttctcgtgtagg |
42761880 |
T |
|
| Q |
385 |
tgctgttgg |
393 |
Q |
| |
|
|||| |||| |
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|
| T |
42761879 |
tgctattgg |
42761871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 194 - 248
Target Start/End: Complemental strand, 42743265 - 42743211
Alignment:
| Q |
194 |
ttttgcgtagttgtctatcggcttgatcttgtaacctaaagtaacaaattttcaa |
248 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42743265 |
ttttgtgtagttgtccatcggcttgatcttgtaacctaaagtaacaaattttcaa |
42743211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 194 - 248
Target Start/End: Complemental strand, 42752624 - 42752570
Alignment:
| Q |
194 |
ttttgcgtagttgtctatcggcttgatcttgtaacctaaagtaacaaattttcaa |
248 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42752624 |
ttttgtgtagttgtccatcggcttgatcttgtaacctaaagtaacaaattttcaa |
42752570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 291 - 393
Target Start/End: Original strand, 42735567 - 42735669
Alignment:
| Q |
291 |
ctcttgattctcataaagcaaagggaaaaatattggtatgtcttcgaggtaacaatggtagagttaaaaagggtgtagaagcttctcgagtaggtgctgt |
390 |
Q |
| |
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|||||||| ||||||| ||| | ||||||||||||||||||||| |||| | ||| ||| | || ||||||| ||||||||||||||||||||||| | |
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| T |
42735567 |
ctcttgatcctcataaggcacatggaaaaatattggtatgtcttgaaggtgaaaatagtaaacttgaaaagggcatagaagcttctcgagtaggtgctat |
42735666 |
T |
|
| Q |
391 |
tgg |
393 |
Q |
| |
|
||| |
|
|
| T |
42735667 |
tgg |
42735669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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