View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7439_low_6 (Length: 406)
Name: NF7439_low_6
Description: NF7439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7439_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Complemental strand, 11778125 - 11777733
Alignment:
| Q |
1 |
ccaaaattccttaataactgcacattttgtcaacaattcctcaaatcatttagtacagaacagtctatttcttccatctaacaattcaatcaccgtggat |
100 |
Q |
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| T |
11778125 |
ccaaaattccttaataactgcacattttgtcaacaattcctcaaatcatttagtatagaacagtctatttcttccatctaacaattcaatcaccgtggat |
11778026 |
T |
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| Q |
101 |
tcgaacgacgaaaaaaggtggagagaaaaagtgatattgaaaaacctataattgtttagcgcagatacaaagtgagacgcaaaggtccaagtcatgattt |
200 |
Q |
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| T |
11778025 |
tctaacgacgacaaaaggtggagagaaaaagtgatattgaaaaacctataattgtttagcgcagatacaaagtgagacacaaaggtccaagtcattattt |
11777926 |
T |
|
| Q |
201 |
atggcggaggaagctgcaattcatgacagacagacaatgaatcttgatccactttccatcttttataccagattgcaagatttatgttgatgcagaaaat |
300 |
Q |
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||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11777925 |
atggcggaggaagctgcaattcacgacagacacacaatgaatcttgatccactttccatcttttataccagattgcaagatttatgttgatgcagaaaat |
11777826 |
T |
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| Q |
301 |
tattagttcccacttacagatccatgttcgtcattacaaattataaattcgatgtttttgagttgtttcagatgttgcaataggcgatgatatt |
394 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11777825 |
tattagttcccacttacatatccatgttcgtcattacaaattataaattc-atgtttttgagttgtttcagatgttgcaataggcgatgatatt |
11777733 |
T |
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