View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7439_low_7 (Length: 403)
Name: NF7439_low_7
Description: NF7439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7439_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 3622726 - 3623081
Alignment:
| Q |
1 |
ttattttatagttctttattcttgttgttcagatactcatgctgtaaagggatgggnnnnnnnctaagtctcatactcaagactcatgtgtgtagcatta |
100 |
Q |
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| T |
3622726 |
ttattttatagttctttattcttgttgttcagatactcatgctgtaaagggatgggaaaagaactaagactcatactcaagactcatgtgtgtagcatta |
3622825 |
T |
|
| Q |
101 |
tgacaaaaatgttgaaaaataaagttttcatgggaccattttagactatgtagtaaaatataataaaactttttcttataaacccttccttctcaccact |
200 |
Q |
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| T |
3622826 |
tgacaaaaatgttgaaaaataaagttttcatgggaccattttcgactatgtagtaaaatataataaaactttttcttataaacccttccttctcaccact |
3622925 |
T |
|
| Q |
201 |
cataatatagccatactcataat-ggggaaaaatggcataggtcaaattgttacaaatactacaataatgagtgccattattaatatgcaagaaaaaata |
299 |
Q |
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||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3622926 |
catgatatagccatactcataatgggggaaaaatggcataggtcaaattgttacaaatactaccataatgagtgccattattaatatgcaagaaaaaata |
3623025 |
T |
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| Q |
300 |
tattggcatgctgacttagatatagatagaccaagaaaagcttatacgatgctcct |
355 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3623026 |
tattggcatgctgacttagatatagatagaccaagaaaagcttatacgatgctcct |
3623081 |
T |
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