View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7440_high_1 (Length: 392)
Name: NF7440_high_1
Description: NF7440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7440_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 14093028 - 14092831
Alignment:
| Q |
1 |
aataggcaatatgacaatattcaaaatggaaacactcaattttaatcaatttccattttctcgattgaccacaaaataaacaatattaaaaattaaatta |
100 |
Q |
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| T |
14093028 |
aataggcaatatgacaatattcaaaatggaaacactcaattttaatcaatttccattttctcgattgaccacaaaataaacaatattaaaaattaaatta |
14092929 |
T |
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| Q |
101 |
ccatatcgatagagcatctactgcaatctctgcatttggaagattcccggtcattaatatcagaattctataataccaattctccaaactgcaaacag |
198 |
Q |
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| T |
14092928 |
ccatatggatagagcatctactgcaatctctgcatttggaagattcccggtcattaatatcagaattctataataccaattctccaaactgcaaacag |
14092831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 298 - 373
Target Start/End: Complemental strand, 14092734 - 14092659
Alignment:
| Q |
298 |
tcttatatacgaaaccggagaaaaacctaccatagcataacaccagaagcagcagaaagtttaacaaattcccaaa |
373 |
Q |
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| T |
14092734 |
tcttatatacgaaacccgagaaaaacttaccatagcataacaccagaagcagcagaaagtttaacaaattcccaaa |
14092659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 277
Target Start/End: Complemental strand, 14092791 - 14092751
Alignment:
| Q |
238 |
tataccgtctcgtaaaccaa-tacattaattattcaataaa |
277 |
Q |
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| T |
14092791 |
tataccgtctcgtaaaccaaatacattaattattcaataaa |
14092751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 325 - 373
Target Start/End: Complemental strand, 14104368 - 14104320
Alignment:
| Q |
325 |
taccatagcataacaccagaagcagcagaaagtttaacaaattcccaaa |
373 |
Q |
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| T |
14104368 |
taccagagcataaccccagaagcagcagagagtttagcaaactcccaaa |
14104320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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