View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7440_low_1 (Length: 1027)
Name: NF7440_low_1
Description: NF7440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7440_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 758; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 758; E-Value: 0
Query Start/End: Original strand, 1 - 851
Target Start/End: Complemental strand, 38080928 - 38080082
Alignment:
| Q |
1 |
gttttccagcatagatctctgctttgacaatgcattcacaactggtgtacctggtggaacctgtaataatttgtaacaattagttattgtactactatac |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
38080928 |
gttttccagcatagatctctgctttgacaatgcattcacaactggtgtacctggtggaacctgtaataatttgtaacaattagttattttactactatac |
38080829 |
T |
|
| Q |
101 |
atcaaccttatagatataattaattaaccagctacattagacttacaagtggagccttagagaggtaactgaggatggttgcaacagcatggaatgaatg |
200 |
Q |
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||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38080828 |
atcaaccttatagatataattaacta----gctacattagacttacaagtggagccttagagaggtaactgaggatggttgcaacagcatggaatgaatg |
38080733 |
T |
|
| Q |
201 |
aaacttgtcctatnnnnnnnnnnnncagcaatagatttagctcacagttttttaataattgaataaacataacagtttaagcaacaatagataatgacct |
300 |
Q |
| |
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||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38080732 |
aaacttgtcctataaaaataataaacagcaacagatttagctcacagttttttaataattgaataaacataacagtttaagcaacaatagataatgacct |
38080633 |
T |
|
| Q |
301 |
cttgttcagatttgaactggattctagtgctaagttcagcaagaaggaccaaatccaagataattggagctgccaaaagtgaatcttcacatgtgttgtg |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38080632 |
cttgttcagatttgaactggattctagtgctaagttcagcaagaaggaccaaatccaagataattggagctgccaaaagtgaatcttcacatgtgttgtg |
38080533 |
T |
|
| Q |
401 |
catcacaattgtgttctttccacccatgaatatctctgaagtgtactcatccattgctctcttgctgtcccccacataaggcacatactgcaaattcaaa |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
38080532 |
catcacaattgtgttctttccacccatgaatatctctgaagtgtactcatccattgctctcttgctgtcccccacataaggcacatactgaaaattcaaa |
38080433 |
T |
|
| Q |
501 |
actaattaattaataaaaattattcaaagactactacttcaaataaagacagtaaaaataaaagttactaccttaataacaacaacatggtctggatgtt |
600 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38080432 |
actaattaattaataaaaattattcaaagactactacttcaaataacaccaacaaaaataaaagttactaccttaataacaacaacatggtctggatgtt |
38080333 |
T |
|
| Q |
601 |
caccaggaccatagaggatggcattgctgttaaccatgtcatcaacaacgttactctttgagatttccttagagcggaaggtttgtggtgcagaaagatt |
700 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38080332 |
caccaggaccatagaggatggcattgctgttaaccatgtcatcaacaacgttactctttgagatttccttagagcggaaggtttgtggtgcagaaagatt |
38080233 |
T |
|
| Q |
701 |
cattccatcattgtttcccaaatggttgtaactcactattgatgttggctgttattcatcaccaaacacaattcaaatatcaattcaatttacttctttt |
800 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38080232 |
cattccatcattgtttcccaaatggttgtaactcactattgatgttggctgttattcatcaccaaacacaattcaaatatcaattcaatttacttctttt |
38080133 |
T |
|
| Q |
801 |
gtgctagcataataatacacgtgttttaaataatttaactttaatcatacc |
851 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
38080132 |
gtgctagcataataatacacgttttttaaataatttaactttaatcatacc |
38080082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 907 - 1011
Target Start/End: Complemental strand, 38080053 - 38079949
Alignment:
| Q |
907 |
cttactttgataccagctcccacaaggaagtcaaccaacacagacttgatttttgtctgaccactcttgaagtcatctccaccaatcaaactgttccttt |
1006 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38080053 |
cttactttgataccagctcccacaaggaaatcaaccaacacagacttgatttttgtctgaccactcttgaagtcatctccaccaatcaaactgttccttt |
38079954 |
T |
|
| Q |
1007 |
tgatg |
1011 |
Q |
| |
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||||| |
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|
| T |
38079953 |
tgatg |
38079949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 114; Significance: 3e-57; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 305 - 494
Target Start/End: Complemental strand, 39700170 - 39699981
Alignment:
| Q |
305 |
ttcagatttgaactggattctagtgctaagttcagcaagaaggaccaaatccaagataattggagctgccaaaagtgaatcttcacatgtgttgtgcatc |
404 |
Q |
| |
|
||||||||| ||||| |||||||||||||| ||||||||||| ||||| ||||||||||| ||||| |||||||| || || |||||||||||||||| | |
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| T |
39700170 |
ttcagatttaaactgaattctagtgctaagctcagcaagaagaaccaagtccaagataataggagcagccaaaagggagtcctcacatgtgttgtgcaac |
39700071 |
T |
|
| Q |
405 |
acaattgtgttctttccacccatgaatatctctgaagtgtactcatccattgctctcttgctgtcccccacataaggcacatactgcaaa |
494 |
Q |
| |
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||||| |||||||| ||||||||||| || || ||||||||||||||||| |||||||||||||| || ||||||||||||||||||||| |
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| T |
39700070 |
acaatagtgttcttcccacccatgaaaatttccgaagtgtactcatccatagctctcttgctgtcaccaacataaggcacatactgcaaa |
39699981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 2e-46
Query Start/End: Original strand, 569 - 752
Target Start/End: Complemental strand, 39699904 - 39699721
Alignment:
| Q |
569 |
taccttaataacaacaacatggtctggatgttcaccaggaccatagaggatggcattgctgttaaccatgtcatcaacaacgttactctttgagatttcc |
668 |
Q |
| |
|
||||||||| || |||||||| || |||||||| ||||| |||||||||||||||||||||| ||||| || ||||||||||| ||||| || |||||| |
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| T |
39699904 |
taccttaatgactacaacatgatcaggatgttcgccaggtgcatagaggatggcattgctgttgaccatatcgtcaacaacgttgctcttggaaatttcc |
39699805 |
T |
|
| Q |
669 |
ttagagcggaaggtttgtggtgcagaaagattcattccatcattgtttcccaaatggttgtaactcactattgatgttggctgt |
752 |
Q |
| |
|
|| ||||||||||||||||| || || || ||||| |||||||||||||| | ||| ||||||||||||||||||||||||||| |
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| T |
39699804 |
ttggagcggaaggtttgtggggctgagaggttcataccatcattgtttccaagatgattgtaactcactattgatgttggctgt |
39699721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 913 - 997
Target Start/End: Complemental strand, 39699554 - 39699470
Alignment:
| Q |
913 |
ttgataccagctcccacaaggaagtcaaccaacacagacttgatttttgtctgaccactcttgaagtcatctccaccaatcaaac |
997 |
Q |
| |
|
|||||||||||||| |||||||| || ||||| ||||| || ||||| ||||||||||| ||||| ||||| ||||||||||||| |
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| T |
39699554 |
ttgataccagctcctacaaggaaatccaccaaaacagatttcattttggtctgaccacttttgaaatcatcaccaccaatcaaac |
39699470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 39701084 - 39701022
Alignment:
| Q |
1 |
gttttccagcatagatctctgctttgacaatgcattcacaactggtgtacctggtggaacctg |
63 |
Q |
| |
|
|||||| ||||| | || ||||||||||||||||||||| |||||||| || ||||||||||| |
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|
| T |
39701084 |
gttttcaagcattgctcgctgctttgacaatgcattcaccactggtgtgcccggtggaacctg |
39701022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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