View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7441_high_2 (Length: 443)
Name: NF7441_high_2
Description: NF7441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7441_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 18 - 425
Target Start/End: Complemental strand, 885751 - 885344
Alignment:
| Q |
18 |
atacataatgtgtggagtatatgagaattgatgtgcgaaatgtttggaattatatgacatgaatgagttggagagggagagtttgtaggaatgcattaat |
117 |
Q |
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| T |
885751 |
atacataatgtgtggagtatatgagaattgatgtgcgaaatgtttggaattatatgacatgaatgagttggagagggagagtttgtaggaatgcattaat |
885652 |
T |
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| Q |
118 |
tgcttctaccttttgttaactagtatttctattactatatgtggaatatatggattatgcatttcaaggcctaataaaaggggaaaatctagttcatctt |
217 |
Q |
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| T |
885651 |
tgcttctaccttttgttaactagtatttctattactatatgtggaatatatggattatgcatttcaaggcctaataaaaggggaaaatctagttcatctt |
885552 |
T |
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| Q |
218 |
acattttgttaatgtacataaagtgcattattccaattattatgaatcatgaaaccccannnnnnnnnctcctatgttaagatttaaactcgagacatcc |
317 |
Q |
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| T |
885551 |
tcattttgttaatgtacataaagtgcattattcctattattatgaatcatgaaaccccattttttttcctcctatgttaagatttaaactcgagacatcc |
885452 |
T |
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| Q |
318 |
aacttctttaaccataagctcaaatcagttgagctacacaattctcnnnnnnnnnctcattttcaagaggatgatggacaaataaacaaattatcaacca |
417 |
Q |
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| T |
885451 |
aacttctttgaccataagctcaaatcagttgagctacacaattctctaaaaaaaactcattttcaagaggatgatggacaaataaacaaattatcaacca |
885352 |
T |
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| Q |
418 |
tttgcttg |
425 |
Q |
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| T |
885351 |
gttgcttg |
885344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 222
Target Start/End: Complemental strand, 1849159 - 1849107
Alignment:
| Q |
171 |
attatgcatttcaaggcctaataaaaggg-gaaaatctagttcatcttacatt |
222 |
Q |
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| T |
1849159 |
attatgcatttcaaggcctaatataagggaaaaaaactagttcatctttcatt |
1849107 |
T |
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