View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7441_high_3 (Length: 392)
Name: NF7441_high_3
Description: NF7441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7441_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 217 - 384
Target Start/End: Complemental strand, 38865904 - 38865741
Alignment:
| Q |
217 |
catgatgaataatagttcaaccattttgctatgtttctaatgttagttctattcttgtgttgccatcagaatttggagcacctcattttgaatttaattg |
316 |
Q |
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| T |
38865904 |
catgatgaataatagttcaaccattttgctatgtttctaatgttagttctattcttgtgttgccatcagaatttggagcacctcattttgaatttaattg |
38865805 |
T |
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| Q |
317 |
tactgggcatagtagctaggtgcataatttaactaacttgggaaatgtttttcacccctagtattatc |
384 |
Q |
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| T |
38865804 |
tactgggcatag----taggtgcataatttaactaacttgggaaatgtttttcacccttagtattatc |
38865741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 24 - 103
Target Start/End: Complemental strand, 38866097 - 38866018
Alignment:
| Q |
24 |
tgatggaggtgacggagttggtgagattgttgcaaaggatgccggtccagttgcacggagatgagtcgttagggttccag |
103 |
Q |
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| T |
38866097 |
tgatggaggtgacggagttggtgagattgttgcaaaggatgccggtccagttgcacggagatgagtcgttagggttccag |
38866018 |
T |
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