View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7441_high_5 (Length: 335)
Name: NF7441_high_5
Description: NF7441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7441_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 15 - 145
Target Start/End: Original strand, 11739737 - 11739871
Alignment:
| Q |
15 |
ccaatttcatgtcattcataaagttttaagttgatcctaattaccacttccgtcccttttataagactattttctga----nnnnnnnnnnaaaactatt |
110 |
Q |
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| T |
11739737 |
ccaatttcatgtcattcataaagttttaagttgatcctaattaccacttccgtcccttttataagactattttctgatttttttttttttttaaactatt |
11739836 |
T |
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| Q |
111 |
cttataaaaagggacggagagagtagttttaagtt |
145 |
Q |
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| T |
11739837 |
cttataaaaagggacggagggagtagttttaagtt |
11739871 |
T |
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