View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7441_high_7 (Length: 275)
Name: NF7441_high_7
Description: NF7441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7441_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 10 - 258
Target Start/End: Original strand, 15625432 - 15625681
Alignment:
| Q |
10 |
aagaatatgcaaaacataataaggccttagaagcccacttattagccaagtccactcattgtattttgatttcttgttttctttttggaagaatggacca |
109 |
Q |
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| T |
15625432 |
aagaaaatgcaaaacataataaggccttagaagcccactcattagccaagtccactcattgtattttgatttcttgttttctttttggaagaatggacca |
15625531 |
T |
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| Q |
110 |
catgatgtgtttttccacgagcattaataaaatgaggtg--nnnnnnnngtgagcgaaaggacaaaggaatgtgttcaacttcccatgccgacactatgt |
207 |
Q |
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| T |
15625532 |
catgatgtgtttttccacgagcattaataaaatgaggtgttttttttttgtgagcgaaaggacaaaggaatgtgtccaacttcccatg-cgacactatgt |
15625630 |
T |
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| Q |
208 |
gctcaagtgaaaatggagaaccaaagactcctatatagtcggcactatgtg |
258 |
Q |
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| T |
15625631 |
gctcgagtgaaaatggagaaccaaagactcctatatagttggcactatgtg |
15625681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 237
Target Start/End: Original strand, 15625673 - 15625710
Alignment:
| Q |
200 |
cactatgtgctcaagtgaaaatggagaaccaaagactc |
237 |
Q |
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| T |
15625673 |
cactatgtgctcgagtgaaaatggagagccaaagactc |
15625710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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