View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7441_low_13 (Length: 225)
Name: NF7441_low_13
Description: NF7441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7441_low_13 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 44226445 - 44226669
Alignment:
| Q |
1 |
tggcttatataggcagcagttctttgaggtacaaactcattcagtccatggccattgtaagtcacactcccagttagctgtacaaattaagcattcggca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44226445 |
tggcttatataggcagcagttctttgaggtacaaactcattcagtccatggccattgtaagtcacactcccagttagctgtacaaattaagcattcggca |
44226544 |
T |
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| Q |
101 |
tccaagttagataattttagatataaagtttaccacctttgatctacaagtgatttatatgattttatttacctggagacttggatcaagctttccagat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44226545 |
tccaagttagataattttagatataaagtttaccacctttgatctacaagtgagttatatgattttatttacctggagacttggatcaagctttccagat |
44226644 |
T |
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| Q |
201 |
aaggctaaaagaagtgtggtctttc |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
44226645 |
aaggctaaaagaagtgtggtctttc |
44226669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 44237243 - 44237467
Alignment:
| Q |
1 |
tggcttatataggcagcagttctttgaggtacaaactcattcagtccatggccattgtaagtcacactcccagttagctgtacaaattaagcattcggca |
100 |
Q |
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||||| ||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
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| T |
44237243 |
tggctgatataagccgcagttctttgaggtacaaactcgttcagtccatggccattgtaagtcacactcccagttagctgtacgaattaagaattcggca |
44237342 |
T |
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| Q |
101 |
tccaagttagataattttagatataaagtttaccacctttgatctacaagtgatttatatgattttatttacctggagacttggatcaagctttccagat |
200 |
Q |
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| T |
44237343 |
tccaaattaaataattttagatataaagtttaccacctttgagctactaatgagttatatgattttatttacctgaagacttggatcaagctttccagat |
44237442 |
T |
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| Q |
201 |
aaggctaaaagaagtgtggtctttc |
225 |
Q |
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|||||||| ||||| |||||||||| |
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| T |
44237443 |
aaggctaacagaagcgtggtctttc |
44237467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 44214275 - 44214406
Alignment:
| Q |
1 |
tggcttatataggcagcagttctttgaggtacaaactcattcagtccatggccattgtaagtcacactcccagttagctgtacaaattaagcattcggca |
100 |
Q |
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||||| ||||| ||||||||||||||||||||||||||||||||||| || |||||||| |||||| |||||| ||||| || ||||||| |||| || | |
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| T |
44214275 |
tggctgatataagcagcagttctttgaggtacaaactcattcagtccgtgtccattgtaggtcacattcccagatagctatataaattaaacatt-ggta |
44214373 |
T |
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| Q |
101 |
tccaagttagataattttagatataaagtttac |
133 |
Q |
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|| || ||| |||||||| |||| |||||||| |
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| T |
44214374 |
tcaaaattatgtaattttaaatattaagtttac |
44214406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 44214459 - 44214519
Alignment:
| Q |
165 |
ttatttacctggagacttggatcaagctttccagataaggctaaaagaagtgtggtctttc |
225 |
Q |
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||||| ||||| | ||||| |||||||||||| ||||| |||||||| |||||||| |||| |
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| T |
44214459 |
ttattcacctgaaaacttgaatcaagctttcctgataaagctaaaagtagtgtggtttttc |
44214519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 2901813 - 2901879
Alignment:
| Q |
7 |
atataggcagcagttctttgaggtacaaactcattcagtccatggccattgtaagtcacactcccag |
73 |
Q |
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| T |
2901813 |
atatatgcagcagttctttgaggtacaaattcatccatcccatgtccattataagtcactctcccag |
2901879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 225
Target Start/End: Complemental strand, 2872825 - 2872785
Alignment:
| Q |
185 |
atcaagctttccagataaggctaaaagaagtgtggtctttc |
225 |
Q |
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|||||||||||||| |||||| ||||||||||||||||||| |
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| T |
2872825 |
atcaagctttccagttaaggccaaaagaagtgtggtctttc |
2872785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 65
Target Start/End: Complemental strand, 2873012 - 2872954
Alignment:
| Q |
7 |
atataggcagcagttctttgaggtacaaactcattcagtccatggccattgtaagtcac |
65 |
Q |
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||||| ||||||||||||||||||||||| |||| || ||||| ||||| |||||||| |
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| T |
2873012 |
atatatgcagcagttctttgaggtacaaattcatccattccatatccattataagtcac |
2872954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 225
Target Start/End: Original strand, 2902070 - 2902112
Alignment:
| Q |
183 |
ggatcaagctttccagataaggctaaaagaagtgtggtctttc |
225 |
Q |
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|||||||||||||| || || |||||||||||||||||||||| |
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| T |
2902070 |
ggatcaagctttcctgacaaagctaaaagaagtgtggtctttc |
2902112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 39578202 - 39578263
Alignment:
| Q |
13 |
gcagcagttctttgaggtacaaactcattcagtccatggccattgtaagtcacactcccagt |
74 |
Q |
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||||||||||||||||||||||||||||||| |||| || ||||||||||| ||||||| |
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| T |
39578202 |
gcagcagttctttgaggtacaaactcattcatctcatgaccgttgtaagtcaccttcccagt |
39578263 |
T |
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