View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7441_low_4 (Length: 374)
Name: NF7441_low_4
Description: NF7441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7441_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 357; Significance: 0; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 11739969 - 11740337
Alignment:
| Q |
1 |
caatagtttttgaaccactgacgaaagacaactatgattactggagctgtctggtgagaaattatctattagggcaaggtctgtgggggtttgtgacttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
11739969 |
caatagtttttgaaccactgacgaaagacaactatgattactggagctgtctggtgagaaattatctattagggcaagatctgtgggggtttgtgacttc |
11740068 |
T |
|
| Q |
101 |
tatttctgagagcactggtccacgatctagacgagaaactgaggtttggagcaggaggaatgggaaagctttgcatatcattcaactagcatgtggacca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11740069 |
tatttctgagagcactggtccacgatctagacgagaaactgaggtctggaacaggaggaatgggaaagctttgcatatcattcaactagcatgtggacca |
11740168 |
T |
|
| Q |
201 |
gagaatattaatcttattaaggatcttcaatccgctagagaagcttggaatgaattgagtacacattatagctcagatttatcagctgatccagatattg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11740169 |
gagaatattaatcttattaaggatcttcaatccgctagagaagcttggaatgaattgagtacacattatagctcagatttatcagctgatccagatattg |
11740268 |
T |
|
| Q |
301 |
agcaaggtatatgtcaatttaacgtacaaatttgtatagttattatttttctaattcttctatgttcat |
369 |
Q |
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| T |
11740269 |
agcaaggtatatgtcaatttaacgtacaaatttgtatagttattatttttctaattcttctatgttcat |
11740337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 2 - 310
Target Start/End: Complemental strand, 11887252 - 11886947
Alignment:
| Q |
2 |
aatagtttttgaaccactgacgaaagacaactatgattactggagctgtctggtgagaaattatctattagggcaaggtctgtgggggtttgtgacttct |
101 |
Q |
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||||||| ||||||||||||| ||||||||||| || |||||||||||||||| ||||| ||||| | || || ||||||||||| ||||||| ||| |
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| T |
11887252 |
aatagttcttgaaccactgaccaaagacaactacgaaaactggagctgtctggttagaaactatcttgtgggacatggtctgtggggtgttgtgacctct |
11887153 |
T |
|
| Q |
102 |
atttctgagagcactggtccacgatctagacgagaaactgaggtttggagcaggaggaatgggaaagctttgcatatcattcaactagcatgtggaccag |
201 |
Q |
| |
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||| |||| | |||| | || |||| ||| |||| |||||| ||||| ||||||||| ||||||||||||||||||||| |||||||||||| |
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| T |
11887152 |
attcctgaaat---tggtgcgcgttctaagatcgaatatgagatttggaacaggaagaatgggaaggctttgcatatcattcaactaacatgtggaccag |
11887056 |
T |
|
| Q |
202 |
agaatattaatcttattaaggatcttcaatccgctagagaagcttggaatgaattgagtacacattatagctcagatttatcagctgatccagatattga |
301 |
Q |
| |
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||||| ||| || ||||| |||||||| |||| |||||| |||||| ||||| || || |||||||||||||||| ||| |||||||||||||| |
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| T |
11887055 |
agaatcttactcatattagagatcttcatattgctaaagaagcctggaataaattgggtgcaacttatagctcagatttacaagccgatccagatattga |
11886956 |
T |
|
| Q |
302 |
gcaaggtat |
310 |
Q |
| |
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||||||||| |
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|
| T |
11886955 |
gcaaggtat |
11886947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 11841970 - 11841864
Alignment:
| Q |
1 |
caatagtttttgaaccactgacgaaagacaactatgattactggagctgtctggtgagaaattatctattagggcaaggtctgtgggggtttgtgacttc |
100 |
Q |
| |
|
|||||||| |||||||||| || ||||||||||| ||| ||||||||||| |||||||||| ||||| ||||| | ||||||||| |||||||||| |
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| T |
11841970 |
caatagttcttgaaccactaacaaaagacaactacgataactggagctgtttggtgagaaactatcttgaggggcatgatctgtggggagttgtgacttc |
11841871 |
T |
|
| Q |
101 |
tatttct |
107 |
Q |
| |
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| ||||| |
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|
| T |
11841870 |
tgtttct |
11841864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 107
Target Start/End: Complemental strand, 11816657 - 11816552
Alignment:
| Q |
2 |
aatagtttttgaaccactgacgaaagacaactatgattactggagctgtctggtgagaaattatctattagggcaaggtctgtgggggtttgtgacttct |
101 |
Q |
| |
|
||||||| |||||||||| || ||||||||||| ||| | ||||||||| |||||||||| ||||| |||||| | ||||||||| |||||| |||| |
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| T |
11816657 |
aatagttcttgaaccactaacaaaagacaactacgataattggagctgtttggtgagaaactatcttgcagggcatgatctgtggggagttgtgagttct |
11816558 |
T |
|
| Q |
102 |
atttct |
107 |
Q |
| |
|
||||| |
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|
| T |
11816557 |
gtttct |
11816552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 164 - 204
Target Start/End: Complemental strand, 11929702 - 11929662
Alignment:
| Q |
164 |
gaaagctttgcatatcattcaactagcatgtggaccagaga |
204 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
11929702 |
gaaagctttgcatatcattcaactagcatgtggacgagaga |
11929662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 204
Target Start/End: Complemental strand, 12014139 - 12014099
Alignment:
| Q |
164 |
gaaagctttgcatatcattcaactagcatgtggaccagaga |
204 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| ||||| |
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|
| T |
12014139 |
gaaagctttgcatatcattcaactatcatgtggacgagaga |
12014099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 88
Target Start/End: Complemental strand, 11776665 - 11776579
Alignment:
| Q |
2 |
aatagtttttgaaccactgacgaaagacaactatgattactggagctgtctggtgagaaattatctattagggcaaggtctgtgggg |
88 |
Q |
| |
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||||||| |||||||||| || | ||||||||| ||| ||||||||||| |||||| ||| ||||| | ||||| | ||||||||| |
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| T |
11776665 |
aatagttcttgaaccactaacaagagacaactacgataactggagctgtttggtgaaaaactatcttgtggggcatgatctgtgggg |
11776579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 206
Target Start/End: Complemental strand, 11816494 - 11816456
Alignment:
| Q |
168 |
gctttgcatatcattcaactagcatgtggaccagagaat |
206 |
Q |
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||||||||||| |||||||||||||||||| |||||||| |
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| T |
11816494 |
gctttgcatattattcaactagcatgtggatcagagaat |
11816456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 206
Target Start/End: Complemental strand, 11776521 - 11776473
Alignment:
| Q |
158 |
gaatgggaaagctttgcatatcattcaactagcatgtggaccagagaat |
206 |
Q |
| |
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||||||||| ||||||||||| |||||||||||||| ||| | |||||| |
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|
| T |
11776521 |
gaatgggaaggctttgcatattattcaactagcatgcggatctgagaat |
11776473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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