View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7441_low_6 (Length: 302)
Name: NF7441_low_6
Description: NF7441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7441_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 19 - 286
Target Start/End: Original strand, 39932532 - 39932799
Alignment:
| Q |
19 |
atgcattgagaaaatattttcaaatcaagacacatttatcttaattgttgcatttctcgagtgaagacaagttccttaacaggggcaacaagagactcga |
118 |
Q |
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| T |
39932532 |
atgcattaagaaaatattttcaaatcaagacacatttatcttaattgttgcatttctcgagtgaagacaagttccttaacaggggcaacaagagactcga |
39932631 |
T |
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| Q |
119 |
cataatacctacaacttctctcaattctaccatgtccccatgaataggactccgcccataacacaatcgacatatccaagacatattcctacaggtaaag |
218 |
Q |
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| T |
39932632 |
cataatacctacaacttctctcaattctaccatgtccccatgaataggactccgcccgtaacacgatcgacatatccaagacgtattcctacaggtaaag |
39932731 |
T |
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| Q |
219 |
ggagttcaaataaacatgtgtttgaaaagttatgaatcgattgataagtccaattcgaataccttgat |
286 |
Q |
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| T |
39932732 |
ggagttcgaataaatatgtgtttgaaaagttatgaatcgattgataagtccaattccaataccttgat |
39932799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 108; Significance: 3e-54; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 120 - 286
Target Start/End: Original strand, 18148679 - 18148850
Alignment:
| Q |
120 |
ataatacctacaacttctctcaattctaccatgtccccatgaataggactccgcccataacacaatcgacatatccaagacatattcctacaggtaaagg |
219 |
Q |
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| T |
18148679 |
ataatacctacagcttctcccaattctaccaggtccccatgaataggactccgcccataacacaatcggcagatccaagacgtattcctacaggtaaagg |
18148778 |
T |
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| Q |
220 |
gagttcaaataaaca-----tgtgtttgaaaagttatgaatcgattgataagtccaattcgaataccttgat |
286 |
Q |
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| T |
18148779 |
gggttcgaataaatattggttgtgtttgaaaagttatgaatcgattgataagtccaattccaatatcttgat |
18148850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 141 - 187
Target Start/End: Complemental strand, 49069112 - 49069066
Alignment:
| Q |
141 |
aattctaccatgtccccatgaataggactccgcccataacacaatcg |
187 |
Q |
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| T |
49069112 |
aattctaccaggtccccatgaataggactccgcccataacataatcg |
49069066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 286
Target Start/End: Complemental strand, 34210368 - 34210331
Alignment:
| Q |
249 |
tatgaatcgattgataagtccaattcgaataccttgat |
286 |
Q |
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| T |
34210368 |
tatgaatcgattgataagtccaattccaatatcttgat |
34210331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 235 - 286
Target Start/End: Complemental strand, 12952873 - 12952822
Alignment:
| Q |
235 |
tgtgtttgaaaagttatgaatcgattgataagtccaattcgaataccttgat |
286 |
Q |
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| T |
12952873 |
tgtgtttgaaaagttatgaatcgattgataagtccaattccaatatcttgat |
12952822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 279
Target Start/End: Complemental strand, 2363420 - 2363376
Alignment:
| Q |
235 |
tgtgtttgaaaagttatgaatcgattgataagtccaattcgaata |
279 |
Q |
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| T |
2363420 |
tgtgtttgaaaagctatgaactgattgataagtccaattccaata |
2363376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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