View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7442_low_2 (Length: 439)
Name: NF7442_low_2
Description: NF7442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7442_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 19 - 426
Target Start/End: Original strand, 5178941 - 5179348
Alignment:
| Q |
19 |
ttcatcgtatcaatggaagcagaatcaataggtgatgtttgttgtgaacttgtaacacagctcgattgtgagctagaacttgcagacagcacacatgtct |
118 |
Q |
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| T |
5178941 |
ttcatcgtatcaatggaagcagaatcaataggtgatgtttgttgtgaacttgtaacacagctcgattgtgagctagaacttgcagacagcacacatgtct |
5179040 |
T |
|
| Q |
119 |
tcgagtcttgtgcatggcttgcagcatgaaagtcccttgatacccatctccttagatcagaaatttcgtcctcaactatatttggtagctggacattatc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5179041 |
tcgagtcttgtgcatggcttgcagcatgaaagtcccttgatacccatctccttagatcagaaatttcgtcctcaactatatttggtagctggacattatc |
5179140 |
T |
|
| Q |
219 |
ttctagctgatatttcatcggccagtctaagatcacattgtcgtttcttaagacggtgtaacatgagagctgttgcttctggtgctctaccaaactcccc |
318 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5179141 |
ttctagctgatatttcatcggcccgtctaagatcacattgtcgtttcttaagacggtgtaacatgagagctgttgcttctggtgctctaccaaactcccc |
5179240 |
T |
|
| Q |
319 |
aacaggctcatattctcttgtacatgatttaggttatttgaattgtttggcttatggtatgaagtttggttgtcaaaaatactatctatgcttagttgca |
418 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5179241 |
aacaagctcatattctcttgtacatgatttaggttatttgaattgtttggcttatggtatgaagtttggttgtcaaaaatactatctatgcttagttgca |
5179340 |
T |
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| Q |
419 |
tttcttct |
426 |
Q |
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|||||||| |
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| T |
5179341 |
tttcttct |
5179348 |
T |
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