View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7442_low_3 (Length: 402)
Name: NF7442_low_3
Description: NF7442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7442_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 67 - 385
Target Start/End: Complemental strand, 42550931 - 42550621
Alignment:
| Q |
67 |
atagcacatctctatattcaaactaaatcatagattcatagccaaaatcactaaatcagaatcaatttgattaaaaacaagttttgtcacctagaggcaa |
166 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
42550931 |
atagcacatctctatattcaaactaaatcatagattcatagccaaaatca--------gaatcaatttgattaaaaacaagttttgtcacctagaggcaa |
42550840 |
T |
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| Q |
167 |
aagacacactaagtatacgtcaaaacagtaatctcattctgttattaccgctaggagcatatgcactagcaggcttgagtatttctagagtacttaatta |
266 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
42550839 |
aagacacactaagtatacgtcaaaacagtaatctcattctgttattaccgctaggagcatatgcactagcaggcttgagtatttctagtgtacttaatta |
42550740 |
T |
|
| Q |
267 |
attttttggtgattgacaaatatcagatatcttcaaagagactaagaaagttggtacgtgtaatagttagttattaaacatgtcaaaactcataaatcaa |
366 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
42550739 |
attttttggtgattgagaaatatcagatatcttcaaagagactaagaaagttggtacgtgtaatagttagttattaaatatgtcaaaactcataaatcaa |
42550640 |
T |
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| Q |
367 |
catccgtaacatgtggtgt |
385 |
Q |
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||||||||||||||||||| |
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| T |
42550639 |
catccgtaacatgtggtgt |
42550621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 55
Target Start/End: Complemental strand, 42551063 - 42551024
Alignment:
| Q |
16 |
atgacacgcgaatttttcaagagcgttgtgctttctaaaa |
55 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
42551063 |
atgacacgcgaatttttcaagagcgttgtgctttctaaaa |
42551024 |
T |
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