View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7443_high_3 (Length: 225)
Name: NF7443_high_3
Description: NF7443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7443_high_3 |
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| [»] scaffold0092 (1 HSPs) |
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| [»] scaffold0053 (1 HSPs) |
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Alignment Details
Target: scaffold0092 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0092
Description:
Target: scaffold0092; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 42646 - 42433
Alignment:
| Q |
1 |
tcgagtgagatgaaggtgtgtgtgcgatcatcattaacaaaaacctcccatttgtcaaagttga-------------------caagttaaagacaacaa |
81 |
Q |
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| T |
42646 |
tcgactgagaggaaggtgcgtgtgcgatcatcattaacaaaaacctcccatttgtcaaagttgatccagtagctactcaatgacaagttaaaggcaacaa |
42547 |
T |
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| Q |
82 |
tcaggtaaatgggttgacaaaaaatatgccgtttaatttttcaaaactgaacaaaacaagaataaaaacttacaggggttgcgtctgaagcttctgcttt |
181 |
Q |
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| T |
42546 |
tcaggtaaacgggttgacaataaatatgccgttcaatttttcaaaactgaacaaaacaa----------------gggttgcgtctgaagcttctgcttt |
42463 |
T |
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| Q |
182 |
agcattgtgaccactgagtcaatctgatgt |
211 |
Q |
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||||||| |||||||||||||||||||||| |
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| T |
42462 |
agcattgagaccactgagtcaatctgatgt |
42433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0053 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0053
Description:
Target: scaffold0053; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 6 - 211
Target Start/End: Complemental strand, 8457 - 8242
Alignment:
| Q |
6 |
tgagatgaaggtgtgtgtgcgatcatcattaacaaaaacctcccatttgtcaaagt---------------------tgacaagttaaagacaacaatca |
84 |
Q |
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||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
8457 |
tgagaggaaggtgcgtgtgcgatcatcattaacaaaaacctcccatttgtcaaagtcgatccagtagctgctcaagatgacaagttaaaggcaacaatca |
8358 |
T |
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| Q |
85 |
ggtaaatgggttgacaaaaaatatgccgtttaatttttcaaaactgaacaaaacaagaataaaaacttacaggggttgcgtctgaagcttctgctttagc |
184 |
Q |
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| T |
8357 |
ggtaaacgg-ttgacaaaaaatattctgttcaatttttcaaaac----------aagaataaaaacttacagggattgtgtctgaagcttctgttttagc |
8269 |
T |
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| Q |
185 |
attgtgaccactgagtcaatctgatgt |
211 |
Q |
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||||||||||||||||||||||||||| |
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| T |
8268 |
attgtgaccactgagtcaatctgatgt |
8242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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