View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7443_low_3 (Length: 346)

Name: NF7443_low_3
Description: NF7443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7443_low_3
NF7443_low_3
[»] chr4 (26 HSPs)
chr4 (1-340)||(29437623-29437967)
chr4 (1-121)||(19602200-19602321)
chr4 (7-94)||(26160265-26160353)
chr4 (2-94)||(31859452-31859546)
chr4 (198-332)||(31859711-31859855)
chr4 (44-149)||(10576867-10576974)
chr4 (198-289)||(20985203-20985294)
chr4 (218-340)||(23353774-23353902)
chr4 (203-294)||(33519238-33519329)
chr4 (1-94)||(22120115-22120209)
chr4 (237-339)||(17187326-17187438)
chr4 (2-94)||(33519483-33519576)
chr4 (27-94)||(12028484-12028552)
chr4 (288-340)||(13064578-13064630)
chr4 (285-340)||(7024126-7024181)
chr4 (2-115)||(13066160-13066275)
chr4 (2-94)||(23354039-23354132)
chr4 (289-340)||(9288362-9288413)
chr4 (286-340)||(15192356-15192409)
chr4 (290-340)||(26159908-26159958)
chr4 (286-340)||(34864204-34864257)
chr4 (36-141)||(7023833-7023937)
chr4 (291-340)||(18444402-18444451)
chr4 (2-94)||(21077722-21077815)
chr4 (304-340)||(19601951-19601987)
chr4 (229-289)||(21077446-21077506)
[»] chr2 (19 HSPs)
chr2 (64-339)||(14921711-14922000)
chr2 (2-133)||(25460338-25460471)
chr2 (171-289)||(34063625-34063742)
chr2 (1-120)||(27917592-27917712)
chr2 (1-108)||(24188450-24188553)
chr2 (8-84)||(39732119-39732196)
chr2 (182-340)||(17414958-17415125)
chr2 (2-94)||(18819131-18819224)
chr2 (170-294)||(18818910-18819033)
chr2 (9-92)||(31262413-31262497)
chr2 (12-94)||(24047785-24047868)
chr2 (3-92)||(17862842-17862931)
chr2 (218-340)||(19541189-19541320)
chr2 (1-94)||(15454070-15454163)
chr2 (36-94)||(18235929-18235987)
chr2 (1-92)||(17884133-17884224)
chr2 (251-289)||(16593614-16593652)
chr2 (1-94)||(21844391-21844485)
chr2 (248-285)||(27417123-27417160)
[»] chr3 (26 HSPs)
chr3 (1-146)||(26298177-26298323)
chr3 (1-152)||(20892054-20892207)
chr3 (1-136)||(18474610-18474748)
chr3 (1-121)||(19542661-19542783)
chr3 (1-115)||(11475287-11475402)
chr3 (237-340)||(19542973-19543086)
chr3 (2-94)||(19285549-19285641)
chr3 (286-340)||(19219119-19219173)
chr3 (41-94)||(22992294-22992347)
chr3 (298-339)||(28422606-28422647)
chr3 (1-88)||(21828770-21828858)
chr3 (174-265)||(26297978-26298069)
chr3 (213-286)||(27374274-27374347)
chr3 (2-94)||(33578208-33578301)
chr3 (304-340)||(8402478-8402514)
chr3 (46-94)||(10342207-10342255)
chr3 (249-289)||(18474383-18474423)
chr3 (286-338)||(19263815-19263867)
chr3 (60-143)||(26387433-26387517)
chr3 (305-340)||(26297899-26297934)
chr3 (44-82)||(22489691-22489729)
chr3 (104-150)||(22493445-22493491)
chr3 (36-94)||(22991074-22991132)
chr3 (251-289)||(25883316-25883354)
chr3 (229-289)||(8402392-8402452)
chr3 (245-289)||(19219068-19219112)
[»] chr7 (26 HSPs)
chr7 (1-177)||(24596565-24596742)
chr7 (1-134)||(4829239-4829373)
chr7 (63-178)||(8606224-8606338)
chr7 (12-165)||(30405952-30406107)
chr7 (1-94)||(22334854-22334948)
chr7 (45-141)||(5312405-5312500)
chr7 (1-94)||(5636657-5636751)
chr7 (185-288)||(3487164-3487266)
chr7 (198-340)||(24596815-24596966)
chr7 (55-120)||(9760524-9760589)
chr7 (55-120)||(9800966-9801031)
chr7 (285-340)||(23125053-23125108)
chr7 (287-341)||(21545736-21545790)
chr7 (1-120)||(9552570-9552691)
chr7 (286-337)||(30405749-30405800)
chr7 (286-340)||(7494849-7494902)
chr7 (290-340)||(9761328-9761377)
chr7 (304-340)||(4977746-4977782)
chr7 (251-340)||(29544672-29544771)
chr7 (36-94)||(3268533-3268591)
chr7 (251-289)||(20017166-20017204)
chr7 (248-289)||(4829001-4829042)
chr7 (252-289)||(7815536-7815573)
chr7 (290-339)||(9801787-9801835)
chr7 (286-326)||(12358671-12358711)
chr7 (304-340)||(20461574-20461610)
[»] chr1 (18 HSPs)
chr1 (169-332)||(26854102-26854274)
chr1 (51-137)||(52270849-52270935)
chr1 (27-146)||(26853916-26854036)
chr1 (1-137)||(21549058-21549194)
chr1 (169-335)||(52271027-52271202)
chr1 (50-138)||(23506183-23506271)
chr1 (208-288)||(25665590-25665670)
chr1 (15-94)||(27460460-27460540)
chr1 (218-289)||(23505969-23506040)
chr1 (1-121)||(25665357-25665480)
chr1 (36-133)||(25778148-25778245)
chr1 (177-340)||(21548800-21548974)
chr1 (251-289)||(11769857-11769895)
chr1 (286-340)||(18300911-18300965)
chr1 (237-340)||(19257655-19257766)
chr1 (237-340)||(25126632-25126745)
chr1 (1-94)||(25126900-25126994)
chr1 (36-85)||(25730937-25730986)
[»] chr5 (24 HSPs)
chr5 (1-155)||(23157354-23157510)
chr5 (44-166)||(25368017-25368140)
chr5 (2-94)||(7742455-7742548)
chr5 (9-103)||(18281789-18281884)
chr5 (198-338)||(19331664-19331814)
chr5 (169-288)||(23157585-23157704)
chr5 (2-111)||(18178575-18178684)
chr5 (1-93)||(16622207-16622300)
chr5 (1-87)||(20695088-20695175)
chr5 (243-289)||(18872907-18872953)
chr5 (1-94)||(25681049-25681143)
chr5 (7-94)||(17695027-17695115)
chr5 (286-340)||(11274238-11274292)
chr5 (286-339)||(7742778-7742831)
chr5 (251-340)||(26329933-26330031)
chr5 (218-289)||(19763716-19763787)
chr5 (55-177)||(24410546-24410665)
chr5 (290-340)||(24410842-24410892)
chr5 (286-331)||(18178263-18178308)
chr5 (2-82)||(19763461-19763542)
chr5 (36-113)||(20083929-20084006)
chr5 (8-68)||(24846613-24846674)
chr5 (304-340)||(26070626-26070662)
chr5 (252-288)||(30072330-30072366)
[»] scaffold0065 (2 HSPs)
scaffold0065 (5-135)||(12682-12818)
scaffold0065 (208-289)||(12457-12538)
[»] chr8 (22 HSPs)
chr8 (169-329)||(11437583-11437753)
chr8 (36-137)||(18771340-18771441)
chr8 (1-143)||(11437801-11437944)
chr8 (2-103)||(30544171-30544275)
chr8 (176-340)||(13583304-13583482)
chr8 (169-337)||(30543916-30544095)
chr8 (197-332)||(5153918-5154063)
chr8 (44-103)||(18786125-18786184)
chr8 (46-141)||(24927470-24927565)
chr8 (286-337)||(29291925-29291976)
chr8 (286-340)||(28292009-28292063)
chr8 (2-111)||(30850623-30850731)
chr8 (205-340)||(32239440-32239585)
chr8 (248-289)||(22894392-22894433)
chr8 (8-92)||(23876395-23876480)
chr8 (2-90)||(28074945-28075034)
chr8 (290-338)||(6888105-6888153)
chr8 (55-94)||(6887828-6887867)
chr8 (232-332)||(30850944-30851054)
chr8 (1-94)||(5569740-5569833)
chr8 (229-322)||(31436643-31436742)
chr8 (26-141)||(14184326-14184443)
[»] scaffold0011 (2 HSPs)
scaffold0011 (170-289)||(227969-228088)
scaffold0011 (91-178)||(227818-227905)
[»] scaffold0337 (3 HSPs)
scaffold0337 (6-112)||(3573-3684)
scaffold0337 (208-289)||(2021-2102)
scaffold0337 (304-340)||(1961-1997)
[»] chr6 (20 HSPs)
chr6 (1-90)||(22262835-22262925)
chr6 (195-335)||(26499655-26499804)
chr6 (13-178)||(28178365-28178531)
chr6 (2-73)||(10976638-10976710)
chr6 (5-112)||(17198379-17198487)
chr6 (1-94)||(9396170-9396264)
chr6 (286-336)||(30355473-30355523)
chr6 (36-141)||(15318459-15318564)
chr6 (36-91)||(12971956-12972011)
chr6 (13-94)||(32930051-32930133)
chr6 (208-289)||(24507263-24507344)
chr6 (218-285)||(17198652-17198719)
chr6 (290-337)||(33638417-33638464)
chr6 (286-340)||(12972293-12972347)
chr6 (51-141)||(15349108-15349198)
chr6 (36-110)||(15369135-15369209)
chr6 (251-289)||(15575137-15575175)
chr6 (49-112)||(15375857-15375920)
chr6 (251-287)||(17860312-17860348)
chr6 (304-340)||(24507368-24507404)
[»] scaffold1149 (2 HSPs)
scaffold1149 (209-289)||(2000-2080)
scaffold1149 (47-104)||(2246-2301)
[»] scaffold0650 (1 HSPs)
scaffold0650 (286-340)||(5678-5731)
[»] scaffold0188 (1 HSPs)
scaffold0188 (287-340)||(26864-26917)
[»] scaffold0190 (2 HSPs)
scaffold0190 (5-120)||(11239-11355)
scaffold0190 (237-289)||(11548-11599)
[»] scaffold0185 (1 HSPs)
scaffold0185 (198-289)||(2713-2804)
[»] scaffold0043 (2 HSPs)
scaffold0043 (297-341)||(58897-58941)
scaffold0043 (213-289)||(58963-59038)
[»] scaffold0836 (1 HSPs)
scaffold0836 (224-286)||(2824-2886)
[»] scaffold0171 (1 HSPs)
scaffold0171 (286-340)||(21550-21604)


Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 29437967 - 29437623
Alignment:
Q  1 cttgacccttgccttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagagagtgaa 99  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29437967 cttgacccttgccttgtaccactagttttctgaatgaatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagagagtgaa 29437868  T
Q  100 aatagggtttttccaccaaaaacggcttggaaaacaagcaaacatcacttcctccctgt----gtccatgcgtggggcgcatgaggcatcccctcttgcg 195  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||    |||||||||||||||||||||||||||||||| |||     
T  29437867 aatagggtttttccaccaaaaacggcttggaaaacaagcaaacgtcacttcctccccgtccgtgtccatgcgtggggcgcatgaggcatcccctcctgca 29437768  T
Q  196 caaattctgcagttttcgaccatttttcaagcgttcttctatcttgcgatgtcttggaacttcaaatgaagtttcttcactttgtattgtcttctaagaa 295  Q
    |||||||| ||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  29437767 caaattctacagtttttgaccatttttcaagcgttcttctgtcttgcgatgccttggaacttcaaatgaagtttcttcactttgtattgtcttctaagaa 29437668  T
Q  296 ctattgaacttcaatcttcatatcctcgatccttcacgtgatgtc 340  Q
    | |||||||||||||||||||||||||||||||||||||||||||    
T  29437667 ccattgaacttcaatcttcatatcctcgatccttcacgtgatgtc 29437623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 19602321 - 19602200
Alignment:
Q  1 cttgacccttgccttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagagagtgaa 99  Q
    |||| ||||||||||||||| |||| ||||||||| || | |||||||| |||| ||||||||||||| ||||||||||||| |||||||||||||||||    
T  19602321 cttggcccttgccttgtaccgctagctttctgaatgaaaaaaagagtgtacaagggtctctatttataatgcatgattacttcggggttaagagagtgaa 19602222  T
Q  100 aatagggtttttccaccaaaaa 121  Q
    ||||||| ||||||||||||||    
T  19602221 aataggggttttccaccaaaaa 19602200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 94
Target Start/End: Complemental strand, 26160353 - 26160265
Alignment:
Q  7 ccttgccttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagaga 94  Q
    ||||| |||||||| |||| ||||||||| |||| |||||||||||||||||||||||||||| |||| |||||||| |||||||||||    
T  26160353 ccttgtcttgtaccgctagctttctgaatgaataaaagagtgtgcaagagtctctatttatagggcataattacttatgggttaagaga 26160265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 2 - 94
Target Start/End: Original strand, 31859452 - 31859546
Alignment:
Q  2 ttgacccttgccttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttata-gtgcatgattacttaggggttaagaga 94  Q
    ||||||| ||||||||||  |||||||||||||| |||| ||||||||||||| ||||||| ||||| |||||| ||||||||||||||||||||    
T  31859452 ttgacccctgccttgtacatctagttttctgaatgaataaaagagtgtgcaagggtctctacttataagtgcatcattacttaggggttaagaga 31859546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 198 - 332
Target Start/End: Original strand, 31859711 - 31859855
Alignment:
Q  198 aattctgcagttttcgaccatttttcaagcgttcttctatcttgcgatgtcttggaacttcaaatgaagtttcttcactttgtattgt----------ct 287  Q
    |||| ||||||||||| || ||||||| |||||||||  |||||  ||| |||||||||| |||| || |||||||||||||||||||          ||    
T  31859711 aattttgcagttttcgtccttttttcacgcgttcttccgtcttgaaatgccttggaacttgaaataaattttcttcactttgtattgtcttcaaatacct 31859810  T
Q  288 tctaagaactattgaacttcaatcttcatatcctcgatccttcac 332  Q
    ||||||||| ||||| ||||||| |||||||||||||||||||||    
T  31859811 tctaagaaccattgatcttcaatattcatatcctcgatccttcac 31859855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 44 - 149
Target Start/End: Complemental strand, 10576974 - 10576867
Alignment:
Q  44 agtgtgcaagagtctctatttatagtgcatgattacttaggggttaagagagtgaaaatagggtttttccacca--aaaacggcttggaaaacaagcaaa 141  Q
    |||||||||| ||||||||||||||||||| | |||||| |||||||||||   ||||| || |||| || |||  ||| | ||||||||||||||||||    
T  10576974 agtgtgcaagggtctctatttatagtgcataaatacttacgggttaagagaagaaaaatgggattttccccccaccaaatcagcttggaaaacaagcaaa 10576875  T
Q  142 catcactt 149  Q
    || |||||    
T  10576874 caacactt 10576867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 198 - 289
Target Start/End: Original strand, 20985203 - 20985294
Alignment:
Q  198 aattctgcagttttcgaccatttttcaagcgttcttctatcttgcgatgtcttggaacttcaaatgaagtttcttcactttgtattgtcttc 289  Q
    ||||||||| |||||||||  |||||||||||| |||  || |||  ||||||| || |||||||||  |||||||||||||||||||||||    
T  20985203 aattctgcaattttcgacccattttcaagcgtttttccgtcatgcattgtcttgaaatttcaaatgagttttcttcactttgtattgtcttc 20985294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 218 - 340
Target Start/End: Complemental strand, 23353902 - 23353774
Alignment:
Q  218 tttttcaagcgttcttctatcttgcgatgtcttggaacttcaaatgaagtttcttcactttgtattgtcttctaag-------aactattgaacttcaat 310  Q
    |||||| |||||| |||| | |||| ||| |||||||||| ||||||| ||||||||||||||||||||||  |||       ||||||||| ||| |||    
T  23353902 tttttcgagcgtttttctgttttgcaatgccttggaacttgaaatgaattttcttcactttgtattgtcttaaaagaccttctaactattgatctttaat 23353803  T
Q  311 cttcatatcctcgatccttcacgtgatgtc 340  Q
    ||||||||||| | ||||||| ||||||||    
T  23353802 cttcatatccttg-tccttcatgtgatgtc 23353774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 294
Target Start/End: Complemental strand, 33519329 - 33519238
Alignment:
Q  203 tgcagttttcgaccatttttcaagcgttcttctatcttgcgatgtcttggaacttcaaatgaagtttcttcactttgtattgtcttctaaga 294  Q
    |||| |||||| ||||||||||||||||||||| ||| |  ||| ||||||| || ||||||| ||||||||  ||||||||||||| ||||    
T  33519329 tgcaattttcgtccatttttcaagcgttcttctgtctggaaatgccttggaatttgaaatgaattttcttcaacttgtattgtcttcaaaga 33519238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 22120209 - 22120115
Alignment:
Q  1 cttgacccttgccttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagaga 94  Q
    |||||||||||||||||||  ||||| |||||||| |||| | | ||||||||| ||||||||||   || ||| ||||||||||||||||||||    
T  22120209 cttgacccttgccttgtacagctagtattctgaatgaataaatgtgtgtgcaagggtctctattttgggtacatcattacttaggggttaagaga 22120115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 339
Target Start/End: Complemental strand, 17187438 - 17187326
Alignment:
Q  237 tcttgcgatgtcttggaacttcaaatgaagtttcttcactttgtattgtcttc----------taagaactattgaacttcaatcttcatatcctcgatc 326  Q
    |||||| |||||||| ||||| ||||||| |||||| ||||||||||||||||          ||||||| | ||||||||||||||||||||||| |||    
T  17187438 tcttgcaatgtcttgaaacttgaaatgaattttctttactttgtattgtcttcaaataacttctaagaaccactgaacttcaatcttcatatcctcaatc 17187339  T
Q  327 cttcacgtgatgt 339  Q
     ||||| ||||||    
T  17187338 attcacttgatgt 17187326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 94
Target Start/End: Complemental strand, 33519576 - 33519483
Alignment:
Q  2 ttgacccttgccttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagaga 94  Q
    |||||||||||||| |||  |||| ||||||||| |||| ||||||||||||| |||| ||||||||||  || |||| |||||||||| ||||    
T  33519576 ttgacccttgccttatactgctagatttctgaatgaataaaagagtgtgcaagggtctttatttatagtatatcattaattaggggttacgaga 33519483  T

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Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 27 - 94
Target Start/End: Original strand, 12028484 - 12028552
Alignment:
Q  27 tttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagaga 94  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||  ||||||  | |||||||||    
T  12028484 tttctgaatgaataaaagagtgtgcaagagtctctatttatagtgcatctttacttgtgagttaagaga 12028552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 288 - 340
Target Start/End: Complemental strand, 13064630 - 13064578
Alignment:
Q  288 tctaagaactattgaacttcaatcttcatatcctcgatccttcacgtgatgtc 340  Q
    ||||||||| |||||||||||||| || |||||| ||||||||||||||||||    
T  13064630 tctaagaaccattgaacttcaatcgtcttatccttgatccttcacgtgatgtc 13064578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 285 - 340
Target Start/End: Original strand, 7024126 - 7024181
Alignment:
Q  285 tcttctaagaactattgaacttcaatcttcatatcctcgatccttcacgtgatgtc 340  Q
    |||||||||||| ||||  |||||||||||||||| | ||||||||||||||||||    
T  7024126 tcttctaagaaccattggtcttcaatcttcatatctttgatccttcacgtgatgtc 7024181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 115
Target Start/End: Complemental strand, 13066275 - 13066160
Alignment:
Q  2 ttgacccttgccttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttagg-ggttaagagagtgaa 99  Q
    ||||| |||||||| |||| |||  ||||||||| |||| || |||  |||||||||||||||||||||  |||||||||| || || ||||||||  ||    
T  13066275 ttgactcttgccttataccgctaactttctgaatgaataaaatagtacgcaagagtctctatttatagtttatgattactttggcgggtaagagaggtaa 13066176  T
Q  100 aatagggtttttccac 115  Q
    ||||| ||||||||||    
T  13066175 aatagagtttttccac 13066160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 94
Target Start/End: Complemental strand, 23354132 - 23354039
Alignment:
Q  2 ttgacccttgccttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagaga 94  Q
    |||||| |||||||||||   | | ||||||||| |||| |||||| ||| ||||||| |||||||| | ||| ||||||||||||||||||||    
T  23354132 ttgacctttgccttgtactgttggctttctgaatgaataaaagagtttgcgagagtctttatttataatacatcattacttaggggttaagaga 23354039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 289 - 340
Target Start/End: Complemental strand, 9288413 - 9288362
Alignment:
Q  289 ctaagaactattgaacttcaatcttcatatcctcgatccttcacgtgatgtc 340  Q
    |||||||| ||||  |||||||||||||||||| |||||||||| |||||||    
T  9288413 ctaagaaccattggtcttcaatcttcatatccttgatccttcacttgatgtc 9288362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 340
Target Start/End: Complemental strand, 15192409 - 15192356
Alignment:
Q  286 cttctaagaactattgaacttcaatcttcatatcctcgatccttcacgtgatgtc 340  Q
    ||||||||||| ||||  ||||||| |||||||||| ||||||||||||||||||    
T  15192409 cttctaagaaccattggtcttcaat-ttcatatccttgatccttcacgtgatgtc 15192356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 340
Target Start/End: Complemental strand, 26159958 - 26159908
Alignment:
Q  290 taagaactattgaacttcaatcttcatatcctcgatccttcacgtgatgtc 340  Q
    ||||||| ||||| ||||||||||||||||||  ||||||||| |||||||    
T  26159958 taagaaccattgatcttcaatcttcatatcctgaatccttcacatgatgtc 26159908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 340
Target Start/End: Original strand, 34864204 - 34864257
Alignment:
Q  286 cttctaagaactattgaacttcaatcttcatatcctcgatccttcacgtgatgtc 340  Q
    ||||||||||| ||||| ||||||||| |||||| | ||||||||||||||||||    
T  34864204 cttctaagaaccattga-cttcaatctccatatctttgatccttcacgtgatgtc 34864257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 141
Target Start/End: Original strand, 7023833 - 7023937
Alignment:
Q  36 aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagagagtgaaaatagggtttttccaccaaaaacggcttggaaaaca 135  Q
    |||| ||| ||||||||  |||||||||| |||||||| | | | |||||||| ||||| ||||| |  || |||||||| |||||  ||||||||||||    
T  7023833 aataaaagcgtgtgcaatggtctctatttttagtgcatcactgcataggggtttagaga-tgaaatttaggattttccactaaaaatagcttggaaaaca 7023931  T
Q  136 agcaaa 141  Q
    ||||||    
T  7023932 agcaaa 7023937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 340
Target Start/End: Complemental strand, 18444451 - 18444402
Alignment:
Q  291 aagaactattgaacttcaatcttcatatcctcgatccttcacgtgatgtc 340  Q
    |||||| ||||| ||||||||||  |||| ||||||||||||||||||||    
T  18444451 aagaaccattgatcttcaatctttgtatcatcgatccttcacgtgatgtc 18444402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 94
Target Start/End: Complemental strand, 21077815 - 21077722
Alignment:
Q  2 ttgacccttgccttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagaga 94  Q
    ||||||||| ||||||| | |||| ||| ||||| ||||  | ||||  |||| |||||||||||||||  || ||||||||||||||||||||    
T  21077815 ttgacccttaccttgtatcgctagctttttgaatgaataagatagtggacaagggtctctatttatagtagatcattacttaggggttaagaga 21077722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 340
Target Start/End: Complemental strand, 19601987 - 19601951
Alignment:
Q  304 cttcaatcttcatatcctcgatccttcacgtgatgtc 340  Q
    |||||||| |||||||||||||| |||||||||||||    
T  19601987 cttcaatcatcatatcctcgatctttcacgtgatgtc 19601951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 289
Target Start/End: Complemental strand, 21077506 - 21077446
Alignment:
Q  229 ttcttctatcttgcgatgtcttggaacttcaaatgaagtttcttcactttgtattgtcttc 289  Q
    |||||| ||||| | ||| |||||||||| ||||||| ||| |||| ||||||||||||||    
T  21077506 ttcttccatctttcaatgccttggaacttgaaatgaattttattcaatttgtattgtcttc 21077446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 113; Significance: 4e-57; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 64 - 339
Target Start/End: Original strand, 14921711 - 14922000
Alignment:
Q  64 tatagtgcatgattacttaggggttaagagagtgaaaatagggttttt---ccaccaaaaacggcttggaaaacaagcaaacatcacttcctccctgtgt 160  Q
    ||||||| ||||||||||| || ||||||||||||||||||  |||||   |||| ||||| || |||||||||||||||||| |||| ||| ||  |||    
T  14921711 tatagtgaatgattacttaaggattaagagagtgaaaatagattttttttcccacaaaaaaaggattggaaaacaagcaaacaacactccctacccttgt 14921810  T
Q  161 ccatgcgt-ggggcgcatgaggcatcccctcttgcgcaaattctgcagttttcgaccatttttcaagcgttcttctatcttgcgatgtcttggaacttca 259  Q
    | |||||  ||||||||||||||| |||||| ||||| |||| |||||||||| ||| |||||||||||||||||| ||||| |||| ||||||| ||||    
T  14921811 caatgcgcaggggcgcatgaggcagcccctcctgcgcgaattatgcagttttcaaccctttttcaagcgttcttctgtcttgtgatgccttggaaattca 14921910  T
Q  260 aatgaagtttcttcactttgtattgt----------cttctaagaactattgaacttcaatcttcatatcctcgatccttcacgtgatgt 339  Q
    |||||  |||||||||||||||||||          ||||||||||| |||||||||||||||||||||||||||| |||||| ||||||    
T  14921911 aatgatttttcttcactttgtattgtctacatataccttctaagaaccattgaacttcaatcttcatatcctcgattcttcacatgatgt 14922000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 2 - 133
Target Start/End: Complemental strand, 25460471 - 25460338
Alignment:
Q  2 ttgacccttgccttgtacc-actagttttctgaataa-tacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagagagtgaa 99  Q
    ||||||||||||||||||| | ||| ||||||||||| || |||| |||| ||  |||||||||||||||| |||||||||||||| |||||||||||||    
T  25460471 ttgacccttgccttgtacccattagctttctgaataaataaaagattgtgaaaaggtctctatttatagtgtatgattacttagggattaagagagtgaa 25460372  T
Q  100 aatagggtttttccaccaaaaacggcttggaaaa 133  Q
    ||||||||||||||||||||||| ||||| ||||    
T  25460371 aatagggtttttccaccaaaaacagcttgaaaaa 25460338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 171 - 289
Target Start/End: Original strand, 34063625 - 34063742
Alignment:
Q  171 ggcgcatgaggcatcccctcttgcgcaaattctgcagttttcgaccatttttcaagcgttcttctatcttgcgatgtcttggaacttcaaatgaagtttc 270  Q
    ||||||||||||| || ||| ||| |||||| ||||||||||||| ||||||| ||||||||||  |||  | ||| |||||||||||||||||| ||||    
T  34063625 ggcgcatgaggcagcctctcctgcacaaattatgcagttttcgac-atttttctagcgttcttccgtctcacaatgccttggaacttcaaatgaattttc 34063723  T
Q  271 ttcactttgtattgtcttc 289  Q
    |||||||||||||||||||    
T  34063724 ttcactttgtattgtcttc 34063742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 27917592 - 27917712
Alignment:
Q  1 cttgacccttgccttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagagagtgaa 99  Q
    |||||||||||||||||||| |||| ||||||||| |||| || |||||||||| ||||||| ||||||| ||||||||||| || |||||| |||  ||    
T  27917592 cttgacccttgccttgtaccgctagctttctgaatgaataaaatagtgtgcaagggtctcta-ttatagtccatgattacttcggagttaagggagcaaa 27917690  T
Q  100 aataggg-tttttccaccaaaa 120  Q
    | ||||| ||||||||||||||    
T  27917691 attagggttttttccaccaaaa 27917712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 24188553 - 24188450
Alignment:
Q  1 cttgacccttgccttgtaccactagttttctgaataatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagagagtgaaa 100  Q
    |||||||||||||||||||| |||| ||| ||||| |    | ||| |||||| |||||||||||| ||| ||||||||| |||||||||||||||||||    
T  24188553 cttgacccttgccttgtaccgctagctttttgaatga----atagtatgcaagggtctctatttattgtgtatgattactcaggggttaagagagtgaaa 24188458  T
Q  101 atagggtt 108  Q
    ||| ||||    
T  24188457 ataaggtt 24188450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 39732196 - 39732119
Alignment:
Q  8 cttgccttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttagg 84  Q
    ||||||||||||| |||| ||||||||| |||| ||| ||||| ||||||||||||||||||||||| ||||||||||    
T  39732196 cttgccttgtaccgctagctttctgaatgaataaaagtgtgtgaaagagtctctatttatagtgcatcattacttagg 39732119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 182 - 340
Target Start/End: Original strand, 17414958 - 17415125
Alignment:
Q  182 catcccctcttgcgcaaattctgcagttttcgaccatttttcaagcgttcttctatcttgcgatgtcttggaacttcaaatgaagtttcttcactttgta 281  Q
    ||||||||| || || |||| || |||||| | || |||||  ||||||||||  |||||| ||||||| |||||| ||||||| |||||||||||| |     
T  17414958 catcccctcctgtgcgaattatgtagtttttgtcccttttttgagcgttcttccgtcttgcaatgtcttagaacttgaaatgaattttcttcactttttg 17415057  T
Q  282 ttgtctt----------ctaagaactattgaacttcaatcttcatatcctcgatccttcacgtgatgtc 340  Q
    |||||||          |||||||| |||| | |||||||||||| |||||||||||||||||||||||    
T  17415058 ttgtcttcaaataactcctaagaaccattg-atttcaatcttcatgtcctcgatccttcacgtgatgtc 17415125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 2 - 94
Target Start/End: Complemental strand, 18819224 - 18819131
Alignment:
Q  2 ttgacccttgccttgtaccactagttttctgaataa-tacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagaga 94  Q
    |||||| ||||||||||||  ||| ||||||||||| || |||||| |||||| ||||||||||||| | ||| |||||||||| |||||||||    
T  18819224 ttgaccattgccttgtaccgttagctttctgaataaataaaagagtttgcaagggtctctatttataatacatcattacttaggagttaagaga 18819131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 170 - 294
Target Start/End: Complemental strand, 18819033 - 18818910
Alignment:
Q  170 gggcgcatgaggcatcccctcttgcgcaaattctgcagttttcgaccatttttcaagcgttcttctatcttgcgatgtcttggaacttcaaatgaagttt 269  Q
    |||||||||||||    ||||||| || |||| ||||||||||  || ||||| | || ||||||  |||||| |||||||||||||| || |||| |||    
T  18819033 gggcgcatgaggcggtgcctcttgtgcgaattttgcagttttcatccctttttga-gcattcttccgtcttgcaatgtcttggaacttgaattgaatttt 18818935  T
Q  270 cttcactttgtattgtcttctaaga 294  Q
    |||||||||||||||||||| ||||    
T  18818934 cttcactttgtattgtcttcaaaga 18818910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 92
Target Start/End: Complemental strand, 31262497 - 31262413
Alignment:
Q  9 ttgccttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaaga 92  Q
    ||||||||||||  ||| ||||| ||| |||| |||||||| |||| ||||||||||||||||||| |||||||||||| |||||    
T  31262497 ttgccttgtaccgttagatttctaaatgaataaaagagtgtacaagtgtctctatttatagtgcatcattacttaggggataaga 31262413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 94
Target Start/End: Complemental strand, 24047868 - 24047785
Alignment:
Q  12 ccttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagaga 94  Q
    |||| ||||||||| ||||| ||| ||||  || |||||||||| |||||||||||||||||| ||||||||||| ||||||||    
T  24047868 ccttataccactagctttctcaatgaataagagtgtgtgcaagaatctctatttatagtgcatcattacttagggtttaagaga 24047785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 92
Target Start/End: Complemental strand, 17862931 - 17862842
Alignment:
Q  3 tgacccttgccttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaaga 92  Q
    ||||||||||||||||||||||  || |||||| |||| ||| |||||||| ||||| |||||||||||||| |||||||| || ||||||    
T  17862931 tgacccttgccttgtaccactaactt-ctgaatgaataaaagtgtgtgcaaaagtctatatttatagtgcatcattacttaaggtttaaga 17862842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 340
Target Start/End: Complemental strand, 19541320 - 19541189
Alignment:
Q  218 tttttcaagcgttcttctatcttgcgatgtcttggaacttcaaatgaagtttcttcactttgtattgtcttc---------taagaactattgaacttca 308  Q
    |||||| ||| || |||| |||||| ||| ||  |||||| |||||||| ||||| |||||||||||||||          ||||||| ||||  |||||    
T  19541320 tttttcgagcatttttctgtcttgcaatgcctatgaacttgaaatgaagattcttaactttgtattgtctttaataccttataagaaccattggtcttca 19541221  T
Q  309 atcttcatatcctcgatccttcacgtgatgtc 340  Q
    |||||||||||||||||||||||| |||||||    
T  19541220 atcttcatatcctcgatccttcacttgatgtc 19541189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 15454070 - 15454163
Alignment:
Q  1 cttgacccttgccttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagaga 94  Q
    ||||||| ||| |||||||| |||| ||||| ||| |||| ||| ||||||||| ||||| ||||||||| ||| ||||||||||| ||||||||    
T  15454070 cttgaccattgtcttgtacccctaggtttctaaatgaata-aagtgtgtgcaagggtctcgatttatagttcatcattacttagggtttaagaga 15454163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 94
Target Start/End: Original strand, 18235929 - 18235987
Alignment:
Q  36 aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagaga 94  Q
    |||| ||| |||| ||||||||||||| |||| ||||| ||||||||||||||||||||    
T  18235929 aataaaagtgtgtacaagagtctctatctataatgcatcattacttaggggttaagaga 18235987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 17884133 - 17884224
Alignment:
Q  1 cttgacccttgccttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaaga 92  Q
    ||||||||||||||||||| ||||| ||||| ||| |||| |||  |||||||  ||||||||||||||| ||| ||||||||| | ||||||    
T  17884133 cttgacccttgccttgtactactagctttctaaatgaataaaagtatgtgcaatggtctctatttatagt-cataattacttagagtttaaga 17884224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 289
Target Start/End: Original strand, 16593614 - 16593652
Alignment:
Q  251 ggaacttcaaatgaagtttcttcactttgtattgtcttc 289  Q
    ||||||| ||||||| |||||||||||||||||||||||    
T  16593614 ggaacttgaaatgaattttcttcactttgtattgtcttc 16593652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 21844391 - 21844485
Alignment:
Q  1 cttgacccttgccttgtaccactagttttctgaataa-tacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagaga 94  Q
    |||||||| ||||||| ||| |||| || |||||||| || ||| ||||||| | || |||||||||| || || ||||||||||| ||||||||    
T  21844391 cttgacccatgccttgaaccgctagcttactgaataaataaaagtgtgtgcaggggtttctatttatattgaattattacttagggtttaagaga 21844485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 285
Target Start/End: Original strand, 27417123 - 27417160
Alignment:
Q  248 cttggaacttcaaatgaagtttcttcactttgtattgt 285  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  27417123 cttggaacttgaaatgaattttcttcactttgtattgt 27417160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 91; Significance: 5e-44; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 26298323 - 26298177
Alignment:
Q  1 cttgacccttgccttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagagagtgaa 99  Q
    ||||||||||| |||||| |||||| ||||| ||| |||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||    
T  26298323 cttgacccttgacttgtagcactagctttctcaattaataaaagagtgtgcaagagtctctatttataatgcatgattccttaggggttaagagagggaa 26298224  T
Q  100 aatagggtttttccaccaaaaacggcttggaaaacaagcaaacatca 146  Q
    |||| ||||||| |||||||||| |||||||||||||| ||||||||    
T  26298223 aataaggttttttcaccaaaaacagcttggaaaacaaggaaacatca 26298177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 20892207 - 20892054
Alignment:
Q  1 cttgacccttgccttgtaccactagttttctgaataat-acaagagtgtgcaagagtctctatttatagtgcatgattacttagg-ggttaagagagtga 98  Q
    |||||||||||||||||||| |||| ||| |||||| | | || ||||||||||| || ||||||||||||||||||| |||||| ||||||| ||||||    
T  20892207 cttgacccttgccttgtaccgctagctttatgaatagttaaaatagtgtgcaagattcactatttatagtgcatgattgcttaggtggttaagggagtga 20892108  T
Q  99 aaatagggtttttccaccaaaaacggcttggaaaacaagcaaacatcacttcct 152  Q
    ||||||||||||||||| ||||| |||||  ||| |||| ||||| ||||||||    
T  20892107 aaatagggtttttccacaaaaaatggcttataaagcaagaaaacaacacttcct 20892054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 18474748 - 18474610
Alignment:
Q  1 cttgacccttgccttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttagggg--ttaagagagtg 97  Q
    |||||||||||||||||||| |||| |||| |||| |||  |||||||| ||   ||||||||||||| || |||||||| ||||||  |||||||||||    
T  18474748 cttgacccttgccttgtacctctagctttcagaatgaatgaaagagtgttcatttgtctctatttataatggatgattacgtagggggattaagagagtg 18474649  T
Q  98 aaaatagggtttttccaccaaaaacggcttggaaaacaa 136  Q
    ||||||||| ||||||||||| |||| ||||||||||||    
T  18474648 aaaataggggttttccaccaagaacgccttggaaaacaa 18474610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 19542661 - 19542783
Alignment:
Q  1 cttgacccttgccttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattactta-ggggttaagagagtga 98  Q
    |||||||||||||||||||| | || |||| |||| |||  |||||||| || | ||||||||||||| |||||||| |  || ||||||||||||||||    
T  19542661 cttgacccttgccttgtacctcaagctttcagaatgaatgaaagagtgttcatgtgtctctatttataatgcatgatcatatacggggttaagagagtga 19542760  T
Q  99 aaatagggtttttccaccaaaaa 121  Q
    |||||||||||||||||||||||    
T  19542761 aaatagggtttttccaccaaaaa 19542783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 11475402 - 11475287
Alignment:
Q  1 cttgacccttgccttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagagagtgaa 99  Q
    ||||| |||||||||| ||| |||| ||||||||| |||| ||||||||||||||||||||||||||| | ||| |||||||||||||||| |||   ||    
T  11475402 cttgatccttgccttgcaccgctagctttctgaatgaataaaagagtgtgcaagagtctctatttatattacatcattacttaggggttaaaagaagaaa 11475303  T
Q  100 aatagggtttttccac 115  Q
    | ||||||||| ||||    
T  11475302 actagggttttcccac 11475287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 237 - 340
Target Start/End: Original strand, 19542973 - 19543086
Alignment:
Q  237 tcttgcgatgtcttggaacttcaaatgaagtttcttcactttgtattgt----------cttctaagaactattgaacttcaatcttcatatcctcgatc 326  Q
    |||||| ||| |||||||||| ||||||| |||||||||||||||||||          |||||||||||||||||| ||||||||| | || |||||||    
T  19542973 tcttgcaatgccttggaacttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagaactattgaaattcaatctttacattctcgatc 19543072  T
Q  327 cttcacgtgatgtc 340  Q
    ||||| ||||||||    
T  19543073 cttcatgtgatgtc 19543086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 2 - 94
Target Start/End: Complemental strand, 19285641 - 19285549
Alignment:
Q  2 ttgacccttgccttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagaga 94  Q
    |||||||||||||||||||| ||| ||||||||| |||| |||||||| |||  |||| |||||||||||||| ||||||| ||||||| ||||    
T  19285641 ttgacccttgccttgtaccattagctttctgaatgaataaaagagtgt-caaaggtctttatttatagtgcatcattacttcggggttaggaga 19285549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 286 - 340
Target Start/End: Original strand, 19219119 - 19219173
Alignment:
Q  286 cttctaagaactattgaacttcaatcttcatatcctcgatccttcacgtgatgtc 340  Q
    ||||||||||| ||||| |||||||||||||||||| ||||||||| ||||||||    
T  19219119 cttctaagaaccattgatcttcaatcttcatatccttgatccttcatgtgatgtc 19219173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 94
Target Start/End: Original strand, 22992294 - 22992347
Alignment:
Q  41 aagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagaga 94  Q
    ||||||||| ||||||||||||||||||||||| ||||| |||||||| |||||    
T  22992294 aagagtgtggaagagtctctatttatagtgcatcattacgtaggggtttagaga 22992347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 298 - 339
Target Start/End: Complemental strand, 28422647 - 28422606
Alignment:
Q  298 attgaacttcaatcttcatatcctcgatccttcacgtgatgt 339  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  28422647 attgaacttcaatcttcatatcctcaatccttcacgtgatgt 28422606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 21828770 - 21828858
Alignment:
Q  1 cttgacccttgccttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggtt 88  Q
    |||||||||||| |||| || |||| ||||||||| |||| | || ||| |||| ||||||||||||||| ||| ||||||||||||||    
T  21828770 cttgacccttgcattgtgccgctagctttctgaatgaataaatgaatgtacaagggtctctatttatagttcatcattacttaggggtt 21828858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 265
Target Start/End: Complemental strand, 26298069 - 26297978
Alignment:
Q  174 gcatgaggcatcccctcttgcgcaaattctgcagttttcgaccatttttcaagcgttcttctatcttgcgatgtcttggaacttcaaatgaa 265  Q
    ||||||| || |||||| || ||||||||| || ||||  ||  ||||||| ||||||| ||||||||| ||| ||||||||||||||||||    
T  26298069 gcatgagacaacccctcatgtgcaaattcttcaattttttactctttttcatgcgttctcctatcttgcaatgccttggaacttcaaatgaa 26297978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 213 - 286
Target Start/End: Original strand, 27374274 - 27374347
Alignment:
Q  213 gaccatttttcaagcgttcttctatcttgcgatgtcttggaacttcaaatgaagtttcttcactttgtattgtc 286  Q
    |||| |||||||||||||||||| ||||| ||   |||||| ||| ||||||| |||||||||| |||||||||    
T  27374274 gaccctttttcaagcgttcttctgtcttgtgacaccttggatctttaaatgaattttcttcactctgtattgtc 27374347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 94
Target Start/End: Complemental strand, 33578301 - 33578208
Alignment:
Q  2 ttgacccttgccttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagaga 94  Q
    |||||| |||||||| ||| |||| ||||| ||| |||| ||| ||||||||| |||||||||||||||| || ||||| ||  ||||||||||    
T  33578301 ttgaccattgccttgaaccgctagctttctaaatgaataaaagtgtgtgcaagtgtctctatttatagtgtatcattacgtataggttaagaga 33578208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 340
Target Start/End: Original strand, 8402478 - 8402514
Alignment:
Q  304 cttcaatcttcatatcctcgatccttcacgtgatgtc 340  Q
    ||||||||||||||||||||||||||||| |||||||    
T  8402478 cttcaatcttcatatcctcgatccttcacttgatgtc 8402514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 10342255 - 10342207
Alignment:
Q  46 tgtgcaagagtctctatttatagtgcatgattacttaggggttaagaga 94  Q
    ||||||||||||| ||||||||||  |||||||||||||| ||||||||    
T  10342255 tgtgcaagagtctatatttatagtaaatgattacttagggtttaagaga 10342207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 289
Target Start/End: Complemental strand, 18474423 - 18474383
Alignment:
Q  249 ttggaacttcaaatgaagtttcttcactttgtattgtcttc 289  Q
    ||||||||| ||||||| |||||||||||||||||||||||    
T  18474423 ttggaacttgaaatgaattttcttcactttgtattgtcttc 18474383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 338
Target Start/End: Original strand, 19263815 - 19263867
Alignment:
Q  286 cttctaagaactattgaacttcaatcttcatatcctcgatccttcacgtgatg 338  Q
    |||||| |||| ||||| |||||||||||||||||| ||||||||| ||||||    
T  19263815 cttctatgaaccattgatcttcaatcttcatatccttgatccttcatgtgatg 19263867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 143
Target Start/End: Original strand, 26387433 - 26387517
Alignment:
Q  60 tatttatagtgcatgattacttaggggttaagagagtga-aaatagggtttttccaccaaaaacggcttggaaaacaagcaaaca 143  Q
    |||||||| ||||| ||||||| ||||||||| | |  | ||||||| |||||||||||||||| | ||||||||| ||||||||    
T  26387433 tatttataatgcatcattacttgggggttaaggggggtagaaataggttttttccaccaaaaacagtttggaaaactagcaaaca 26387517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 305 - 340
Target Start/End: Complemental strand, 26297934 - 26297899
Alignment:
Q  305 ttcaatcttcatatcctcgatccttcacgtgatgtc 340  Q
    |||||||||||||||||||||||||||| |||||||    
T  26297934 ttcaatcttcatatcctcgatccttcacttgatgtc 26297899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 22489691 - 22489729
Alignment:
Q  44 agtgtgcaagagtctctatttatagtgcatgattactta 82  Q
    |||||||||  ||||||||||||||||||||||||||||    
T  22489691 agtgtgcaatggtctctatttatagtgcatgattactta 22489729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 22493445 - 22493491
Alignment:
Q  104 gggtttttccaccaaaaacggcttggaaaacaagcaaacatcacttc 150  Q
    ||||||||||||||||||| | || ||||||||| ||||||||||||    
T  22493445 gggtttttccaccaaaaacagtttcgaaaacaagaaaacatcacttc 22493491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 94
Target Start/End: Original strand, 22991074 - 22991132
Alignment:
Q  36 aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagaga 94  Q
    |||| ||||||||||||  ||||| ||||||||||||| |||||||| |||||| ||||    
T  22991074 aataaaagagtgtgcaatggtctcgatttatagtgcatcattacttatgggttacgaga 22991132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 289
Target Start/End: Complemental strand, 25883354 - 25883316
Alignment:
Q  251 ggaacttcaaatgaagtttcttcactttgtattgtcttc 289  Q
    ||||||| ||||||| |||||||||||||||||||||||    
T  25883354 ggaacttgaaatgaattttcttcactttgtattgtcttc 25883316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 289
Target Start/End: Original strand, 8402392 - 8402452
Alignment:
Q  229 ttcttctatcttgcgatgtcttggaacttcaaatgaagtttcttcactttgtattgtcttc 289  Q
    |||||| ||||||| ||||| |||||||| |||||||  ||||||||||| |||| |||||    
T  8402392 ttcttccatcttgcaatgtcatggaacttgaaatgaatgttcttcactttatattttcttc 8402452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 289
Target Start/End: Original strand, 19219068 - 19219112
Alignment:
Q  245 tgtcttggaacttcaaatgaagtttcttcactttgtattgtcttc 289  Q
    |||||||||| || ||||||| ||| |||||||||||||||||||    
T  19219068 tgtcttggaatttgaaatgaattttattcactttgtattgtcttc 19219112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 5e-41; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 24596565 - 24596742
Alignment:
Q  1 cttgacccttgccttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagagagtgaa 99  Q
    |||||||||||||||||||||  || ||||||||| |||| ||||||||||||  ||||||||||||| ||||||||||  || ||||||||| ||||||    
T  24596565 cttgacccttgccttgtaccatcagctttctgaatgaataaaagagtgtgcaatggtctctatttataatgcatgattatatacgggttaagatagtgaa 24596664  T
Q  100 aatagggtttttccaccaaaaacggcttggaaaacaagcaaacatcacttcctccctgtgtccatgcgtggggcgcat 177  Q
    ||||||  |||||||||||||| ||||||||||||||||||||| |||||  |  |||||||||||||  ||||||||    
T  24596665 aataggagttttccaccaaaaatggcttggaaaacaagcaaacaacacttaatgtctgtgtccatgcgcagggcgcat 24596742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 4829373 - 4829239
Alignment:
Q  1 cttgacccttgccttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagagagtgaa 99  Q
    |||||||||||||||||||| |||| ||||| ||| |||| || | |||||| ||||||||||| |||||| |||| |||||||||||||||||||||||    
T  4829373 cttgacccttgccttgtaccgctagctttctaaatgaataaaataatgtgcatgagtctctattcatagtggatgactacttaggggttaagagagtgaa 4829274  T
Q  100 aatagggtttttccaccaaaaacggcttggaaaac 134  Q
    ||||| |||||||||||||||||  ||||||||||    
T  4829273 aatagagtttttccaccaaaaacaacttggaaaac 4829239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 63 - 178
Target Start/End: Complemental strand, 8606338 - 8606224
Alignment:
Q  63 ttatagtgcatgattacttaggggttaagagagtgaaaatagggtttttccaccaaaaacggcttggaaaacaagcaaacatcacttcctccctgtgtcc 162  Q
    ||||||||||||| ||| |||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||| || ||||| | |||||||    
T  8606338 ttatagtgcatgaatacataggggttaagagagtgaaaatagagtttt-ccaccaaaaacggtttggaaaacaagcaaacaacatttccttcgtgtgtcc 8606240  T
Q  163 atgcgtggggcgcatg 178  Q
    |||||| |||||||||    
T  8606239 atgcgtagggcgcatg 8606224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 12 - 165
Target Start/End: Complemental strand, 30406107 - 30405952
Alignment:
Q  12 ccttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagagagtgaaaatagggttt- 109  Q
    ||||||||| |||| ||| ||||| |||| |||  |||||||| || ||||||||||||| |||||||| |||   |||||||||||||||||||||||     
T  30406107 ccttgtaccgctagctttatgaatgaataaaagtttgtgcaagggtttctatttatagtgtatgattacatagcaattaagagagtgaaaatagggtttc 30406008  T
Q  110 ttccaccaaaaacggcttggaaaacaagcaaacatcacttcctccctgtgtccatg 165  Q
     | ||| |||||| |||||||||||||||||||| |||| ||| || |||||||||    
T  30406007 cttcacaaaaaacagcttggaaaacaagcaaacaacactccctacccgtgtccatg 30405952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 22334854 - 22334948
Alignment:
Q  1 cttgacccttgccttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagaga 94  Q
    ||||||||||||||||||||||||| ||||||||| |||| |||||||| |||   ||| |||||||||||||| ||||||||||||||||||||    
T  22334854 cttgacccttgccttgtaccactagctttctgaattaataaaagagtgttcaatgatctttatttatagtgcatcattacttaggggttaagaga 22334948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 45 - 141
Target Start/End: Original strand, 5312405 - 5312500
Alignment:
Q  45 gtgtgcaagagtctctatttatagtgcatgattacttaggggttaagagagtgaaaatagggtttttccaccaaaaacggcttggaaaacaagcaaa 141  Q
    |||||||||||||||| |||||||| ||| ||||||||||||||||||| ||||||||  || |||||||| ||||||  |||||||||||||||||    
T  5312405 gtgtgcaagagtctctgtttatagtacatcattacttaggggttaagag-gtgaaaatttgggttttccactaaaaacaacttggaaaacaagcaaa 5312500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 5636751 - 5636657
Alignment:
Q  1 cttgacccttgccttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagaga 94  Q
    ||||||| ||||||||||| ||||| ||||||||| |||| ||| ||||||||| ||||||||||||||||||| ||||||||| | ||||||||    
T  5636751 cttgaccattgccttgtactactagctttctgaatgaataaaagtgtgtgcaagggtctctatttatagtgcatcattacttagtgattaagaga 5636657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 185 - 288
Target Start/End: Original strand, 3487164 - 3487266
Alignment:
Q  185 cccctcttgcgcaaattctgcagttttcgaccattttt-caagcgttcttctatcttgcgatgtcttggaacttcaaatgaagtttcttcactttgtatt 283  Q
    |||||| ||| | |||||| ||||||| |||||||||| |||| |||||||  |||||| ||||||||||||||||||||||  ||||||||||||||||    
T  3487164 cccctcgtgctcgaattctacagtttttgaccattttttcaagagttcttccgtcttgcaatgtcttggaacttcaaatgaa--ttcttcactttgtatt 3487261  T
Q  284 gtctt 288  Q
    |||||    
T  3487262 gtctt 3487266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 198 - 340
Target Start/End: Original strand, 24596815 - 24596966
Alignment:
Q  198 aattctgcagttttcgaccatttttcaagcgttcttctatcttgcgatgtcttggaacttcaaatgaagtttcttcactttgtattg----------tct 287  Q
    |||| ||||||||||||||||||| || || |||||   |||||| ||| |||||||||||||||||| ||||||||||||||||||          |||    
T  24596815 aattatgcagttttcgaccatttt-cacgcattctttcgtcttgcaatgccttggaacttcaaatgaattttcttcactttgtattgtcttcaaatttct 24596913  T
Q  288 tctaagaactattgaacttcaatcttcatatcctcgatccttcacgtgatgtc 340  Q
    |||| |||| | |||||||||||||| |||||||||||| | |||||||||||    
T  24596914 tctatgaaccactgaacttcaatctttatatcctcgatcttccacgtgatgtc 24596966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 55 - 120
Target Start/End: Complemental strand, 9760589 - 9760524
Alignment:
Q  55 gtctctatttatagtgcatgattacttaggggttaagagagtgaaaatagggtttttccaccaaaa 120  Q
    ||||||||||||||| || | || |||||||||||||||||||||||||||| |||||||||||||    
T  9760589 gtctctatttatagttcaaggtttcttaggggttaagagagtgaaaataggggttttccaccaaaa 9760524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 55 - 120
Target Start/End: Complemental strand, 9801031 - 9800966
Alignment:
Q  55 gtctctatttatagtgcatgattacttaggggttaagagagtgaaaatagggtttttccaccaaaa 120  Q
    ||||||||||||||| || | || |||||||||||||||||||||||||||| |||||||||||||    
T  9801031 gtctctatttatagttcaaggtttcttaggggttaagagagtgaaaataggggttttccaccaaaa 9800966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 285 - 340
Target Start/End: Complemental strand, 23125108 - 23125053
Alignment:
Q  285 tcttctaagaactattgaacttcaatcttcatatcctcgatccttcacgtgatgtc 340  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  23125108 tcttataagaaccattgaacttcaatcttcatatcctcgatccttcacatgatgtc 23125053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 287 - 341
Target Start/End: Original strand, 21545736 - 21545790
Alignment:
Q  287 ttctaagaactattgaacttcaatcttcatatcctcgatccttcacgtgatgtcc 341  Q
    |||||||||| ||||| |||||||||||||||||| |||||||||||||||||||    
T  21545736 ttctaagaaccattgatcttcaatcttcatatccttgatccttcacgtgatgtcc 21545790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 9552691 - 9552570
Alignment:
Q  1 cttgacccttgccttgt-accactagttttctgaataa-tacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagagagtga 98  Q
    ||||||||||||||||  |||  ||||||||||||| | |  ||| ||||||||  |||||||||| |||| || | || |||||||||| |||||||||    
T  9552691 cttgacccttgccttgccaccgttagttttctgaatgagttaaagtgtgtgcaacggtctctatttgtagttcaaggtttcttaggggttgagagagtga 9552592  T
Q  99 aaatagggtttttccaccaaaa 120  Q
    ||||||||||||| ||||||||    
T  9552591 aaatagggtttttacaccaaaa 9552570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 286 - 337
Target Start/End: Complemental strand, 30405800 - 30405749
Alignment:
Q  286 cttctaagaactattgaacttcaatcttcatatcctcgatccttcacgtgat 337  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||| ||||    
T  30405800 cttctaagaatcattgaacttcaatcttcatatcctcgatccttcacatgat 30405749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 286 - 340
Target Start/End: Complemental strand, 7494902 - 7494849
Alignment:
Q  286 cttctaagaactattgaacttcaatcttcatatcctcgatccttcacgtgatgtc 340  Q
    ||||||||||| ||| |||||||||||||||||||| ||||||||| ||||||||    
T  7494902 cttctaagaaccatt-aacttcaatcttcatatccttgatccttcatgtgatgtc 7494849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 290 - 340
Target Start/End: Original strand, 9761328 - 9761377
Alignment:
Q  290 taagaactattgaacttcaatcttcatatcctcgatccttcacgtgatgtc 340  Q
    ||||||| ||||| |||||||||||||||||| ||||||||||||||||||    
T  9761328 taagaaccattga-cttcaatcttcatatccttgatccttcacgtgatgtc 9761377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 340
Target Start/End: Original strand, 4977746 - 4977782
Alignment:
Q  304 cttcaatcttcatatcctcgatccttcacgtgatgtc 340  Q
    |||||||||||||||||||||||||||| ||||||||    
T  4977746 cttcaatcttcatatcctcgatccttcatgtgatgtc 4977782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 340
Target Start/End: Complemental strand, 29544771 - 29544672
Alignment:
Q  251 ggaacttcaaatgaagtttcttcactttgtattgtcttc----------taagaactattgaacttcaatcttcatatcctcgatccttcacgtgatgtc 340  Q
    ||||||| ||||||| |||||||||||||||||||||||          ||||||  ||||| |||||||||||||||| | ||||||||| ||||||||    
T  29544771 ggaacttgaaatgaattttcttcactttgtattgtcttcaaaaaccttctaagaatcattgatcttcaatcttcatatctttgatccttcatgtgatgtc 29544672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 94
Target Start/End: Original strand, 3268533 - 3268591
Alignment:
Q  36 aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagaga 94  Q
    |||| ||| |||||||||||||| ||| |||||| ||| ||||||||||| ||||||||    
T  3268533 aataaaagtgtgtgcaagagtctatatatatagtacatcattacttagggtttaagaga 3268591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 289
Target Start/End: Complemental strand, 20017204 - 20017166
Alignment:
Q  251 ggaacttcaaatgaagtttcttcactttgtattgtcttc 289  Q
    ||||||| ||||||| |||||||||||||||||||||||    
T  20017204 ggaacttgaaatgaattttcttcactttgtattgtcttc 20017166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 289
Target Start/End: Complemental strand, 4829042 - 4829001
Alignment:
Q  248 cttggaacttcaaatgaagtttcttcactttgtattgtcttc 289  Q
    |||||||||| ||||||| | |||||||||||||||||||||    
T  4829042 cttggaacttgaaatgaattatcttcactttgtattgtcttc 4829001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 289
Target Start/End: Complemental strand, 7815573 - 7815536
Alignment:
Q  252 gaacttcaaatgaagtttcttcactttgtattgtcttc 289  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  7815573 gaacttgaaatgaattttcttcactttgtattgtcttc 7815536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 339
Target Start/End: Original strand, 9801787 - 9801835
Alignment:
Q  290 taagaactattgaacttcaatcttcatatcctcgatccttcacgtgatgt 339  Q
    ||||||| ||||| |||||||||||||||||| |||||||||| ||||||    
T  9801787 taagaaccattga-cttcaatcttcatatccttgatccttcacatgatgt 9801835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 326
Target Start/End: Original strand, 12358671 - 12358711
Alignment:
Q  286 cttctaagaactattgaacttcaatcttcatatcctcgatc 326  Q
    ||||||||||| ||||| |||||||||||||||||| ||||    
T  12358671 cttctaagaaccattgatcttcaatcttcatatccttgatc 12358711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 340
Target Start/End: Original strand, 20461574 - 20461610
Alignment:
Q  304 cttcaatcttcatatcctcgatccttcacgtgatgtc 340  Q
    |||||||||||||||||| |||||||||| |||||||    
T  20461574 cttcaatcttcatatccttgatccttcacttgatgtc 20461610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 169 - 332
Target Start/End: Original strand, 26854102 - 26854274
Alignment:
Q  169 ggggcgcatgaggcatcccctcttgcgcaaattctgcagttttcgaccatttttcaagcgttcttctatcttgcgatgtcttggaacttcaaatgaagtt 268  Q
    |||| ||||||||||||||||| || || || |||||| ||||||||||||||||| | ||||||| ||||||| ||| |||||||||||||||||| ||    
T  26854102 ggggtgcatgaggcatcccctcatgtgcgaactctgcaattttcgaccatttttca-gtgttcttccatcttgcaatgccttggaacttcaaatgaattt 26854200  T
Q  269 tcttcactttgtattg----------tcttctaagaactattgaacttcaatcttcatatcctcgatccttcac 332  Q
    ||||||||||||||||          |||||||||||| |||||||||||||||||||||| | ||||||||||    
T  26854201 tcttcactttgtattgtcttcaaatatcttctaagaaccattgaacttcaatcttcatatcattgatccttcac 26854274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 51 - 137
Target Start/End: Original strand, 52270849 - 52270935
Alignment:
Q  51 aagagtctctatttatagtgcatgattacttaggggttaagagagtgaaaatagggtttttccaccaaaaacggcttggaaaacaag 137  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||  |||| ||||||||    
T  52270849 aagagtctctatttatattgcatgattacttaggggttaagagagtgaaaatagagcttttccaccaaaaacaacttgaaaaacaag 52270935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 27 - 146
Target Start/End: Original strand, 26853916 - 26854036
Alignment:
Q  27 tttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagagagtgaaaatagggtttttccaccaaaaacggc 125  Q
    ||||||||| |||| || ||||| |||| |||||||||||||||| || |||||||||||||| ||| ||||||||||| ||||||||||||||||||||    
T  26853916 tttctgaatgaataaaatagtgttcaagggtctctatttatagtgtatcattacttaggggttgagatagtgaaaatagtgtttttccaccaaaaacggc 26854015  T
Q  126 ttggaaaacaagcaaacatca 146  Q
    | ||| ||||  |||||||||    
T  26854016 tgggagaacagacaaacatca 26854036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 21549194 - 21549058
Alignment:
Q  1 cttgacccttgccttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagagagtgaa 99  Q
    ||||||| ||| |||||||  |||| ||| ||||| |||| ||||||||||||| |||| |||||||| |||||||||||||  ||||||||| ||| ||    
T  21549194 cttgaccattgacttgtactgctagatttttgaatgaataaaagagtgtgcaagggtctttatttatattgcatgattacttttgggttaagaaagtaaa 21549095  T
Q  100 aatagggtttttccaccaaaaacggcttggaaaacaag 137  Q
    |||| |||||||||||||| ||| ||||| ||||||||    
T  21549094 aata-ggtttttccaccaataacagcttgaaaaacaag 21549058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 169 - 335
Target Start/End: Original strand, 52271027 - 52271202
Alignment:
Q  169 ggggcgcatgaggcatcccctcttgcgcaaattctgcagttttcgaccatttttcaagcgttcttctatcttgcgatgtcttggaacttcaaatgaagtt 268  Q
    ||||||||| ||||| |||||||||| | |||||  ||||||| |||| |||| |   ||||||||  |||||| ||  ||||||| || ||||||| ||    
T  52271027 ggggcgcataaggcaacccctcttgcacgaattcaacagtttttgaccctttt-cgcccgttcttccgtcttgcaattccttggaatttgaaatgaattt 52271125  T
Q  269 tcttcactttgtattgtcttc----------taagaactattgaacttcaatcttcatatcctcgatccttcacgtg 335  Q
    |||||||||||||||||||||          |||| || ||||||||||||||||||||||||||||||||||||||    
T  52271126 tcttcactttgtattgtcttcaaataccttctaagtaccattgaacttcaatcttcatatcctcgatccttcacgtg 52271202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 50 - 138
Target Start/End: Complemental strand, 23506271 - 23506183
Alignment:
Q  50 caagagtctctatttatagtgcatgattacttaggggttaagagagtgaaaatagggtttttccaccaaaaacggcttggaaaacaagc 138  Q
    |||| ||||||||||||||||||| ||||||||||| | ||||||||||||||||  ||| |||||||| |||  ||||||||||||||    
T  23506271 caagggtctctatttatagtgcattattacttagggctcaagagagtgaaaatagattttatccaccaagaacttcttggaaaacaagc 23506183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 208 - 288
Target Start/End: Original strand, 25665590 - 25665670
Alignment:
Q  208 ttttcgaccatttttcaagcgttcttctatcttgcgatgtcttggaacttcaaatgaagtttcttcactttgtattgtctt 288  Q
    ||||||| | |||||||| ||||||||  |||||| ||| |||||||||||||||||  ||||||||||||||||||||||    
T  25665590 ttttcgaacctttttcaatcgttcttccgtcttgcaatgccttggaacttcaaatgatttttcttcactttgtattgtctt 25665670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 94
Target Start/End: Original strand, 27460460 - 27460540
Alignment:
Q  15 tgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagaga 94  Q
    |||||| |||||||||||||  |||| ||||||||| ||| |||||||||||||||| || ||||||||||||||||||||    
T  27460460 tgtaccgctagttttctgaaagaataaaagagtgtgtaagggtctctatttatagtggatcattacttaggggttaagaga 27460540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 218 - 289
Target Start/End: Complemental strand, 23506040 - 23505969
Alignment:
Q  218 tttttcaagcgttcttctatcttgcgatgtcttggaacttcaaatgaagtttcttcactttgtattgtcttc 289  Q
    |||||| |||||| |||| ||||||  ||||||||||||| ||||||| |||||||||||||||||||||||    
T  23506040 tttttccagcgttattctgtcttgcattgtcttggaacttgaaatgaattttcttcactttgtattgtcttc 23505969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 25665357 - 25665480
Alignment:
Q  1 cttgacccttgccttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagagagtgaa 99  Q
    ||||||||||| |||||||  |||| ||| ||||| |||  || | |||||||| ||||||||||| |||||||| ||||||| ||||| | || |||||    
T  25665357 cttgacccttgtcttgtactgctagctttatgaatgaattaaaaattgtgcaagggtctctatttacagtgcatgcttacttatgggttcaaagtgtgaa 25665456  T
Q  100 aataggg--tttttccaccaaaaa 121  Q
    |||||||  |||||||||||||||    
T  25665457 aatagggtttttttccaccaaaaa 25665480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 133
Target Start/End: Complemental strand, 25778245 - 25778148
Alignment:
Q  36 aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagagagtgaaaatagggtttttccaccaaaaacggcttggaaaa 133  Q
    |||| ||||||||||||  ||||||||||||||||||| |||||||| | ||||| ||||  |||||| || |||| ||| ||||||| |||| ||||    
T  25778245 aataaaagagtgtgcaaaggtctctatttatagtgcattattacttaagagttaatagaggaaaaataagggttttgcacaaaaaacgacttgaaaaa 25778148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 340
Target Start/End: Complemental strand, 21548974 - 21548800
Alignment:
Q  177 tgaggcatcccctcttgcgcaaattctgcag-ttttcgaccatttttcaagcgttcttctatcttgcgatgtcttggaacttcaaatgaagtttcttcac 275  Q
    |||||||  |||||||||||||||| ||||| ||||| ||| |||||| ||| |||||   |||||  ||| |||||||||||||||||| ||| ||||     
T  21548974 tgaggcagtccctcttgcgcaaattatgcagtttttcaaccctttttctagcattctttcgtcttgtaatgccttggaacttcaaatgaatttttttcaa 21548875  T
Q  276 tttgtat----------tgtcttctaagaactattgaacttcaatcttcatatcctcgatccttcacgtgatgtc 340  Q
     ||||||          |||||||||||||| ||| | ||||||||||||||||| | || ||| ||||||||||    
T  21548874 cttgtattatcttcaaatgtcttctaagaaccatttagcttcaatcttcatatccacaattctttacgtgatgtc 21548800  T

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Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 289
Target Start/End: Original strand, 11769857 - 11769895
Alignment:
Q  251 ggaacttcaaatgaagtttcttcactttgtattgtcttc 289  Q
    ||||||| ||||||| |||||||||||||||||||||||    
T  11769857 ggaacttgaaatgaattttcttcactttgtattgtcttc 11769895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 340
Target Start/End: Original strand, 18300911 - 18300965
Alignment:
Q  286 cttctaagaactattgaacttcaatcttcatatcctcgatccttcacgtgatgtc 340  Q
    ||||||||||| ||||   || |||||||||||||| ||||||||||||||||||    
T  18300911 cttctaagaaccattggtatttaatcttcatatccttgatccttcacgtgatgtc 18300965  T

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Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 340
Target Start/End: Original strand, 19257655 - 19257766
Alignment:
Q  237 tcttgcgatgtcttggaacttcaaatgaagtttcttcactttgtattgtcttctaagaact--------attgaacttcaatcttcatatcctcgatcct 328  Q
    |||||| ||| ||||||| || |||| || ||||||||||||||||||||||| |||| ||         ||||  |||||||||||||||||||||| |    
T  19257655 tcttgcaatgccttggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaacttgatgttcaatcttcatatcctcgatctt 19257754  T
Q  329 tcacgtgatgtc 340  Q
    ||| ||||||||    
T  19257755 tcatgtgatgtc 19257766  T

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Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 340
Target Start/End: Complemental strand, 25126745 - 25126632
Alignment:
Q  237 tcttgcgatgtcttggaacttcaaatgaagtttcttcactttgtattgtcttc----------taagaactattgaacttcaatcttcatatcctcgatc 326  Q
    |||||| ||| |||||||||| ||||||| |||||||| |||||||||| |||          ||||||||||||| ||  | || |||||||||| |||    
T  25126745 tcttgcaatgccttggaacttgaaatgaattttcttcattttgtattgtattcaaagattttctaagaactattgatctgtagtcgtcatatcctcaatc 25126646  T
Q  327 cttcacgtgatgtc 340  Q
    ||||||||||||||    
T  25126645 cttcacgtgatgtc 25126632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 25126994 - 25126900
Alignment:
Q  1 cttgacccttgccttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagaga 94  Q
    |||||||||||||||||||  |||| ||| ||||| |||| || ||||| ||||  |||||||||||| | ||| | ||||| ||||||||||||    
T  25126994 cttgacccttgccttgtactgctagctttttgaatgaataaaaaagtgttcaaggatctctatttataatacatcactactttggggttaagaga 25126900  T

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Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 25730986 - 25730937
Alignment:
Q  36 aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggg 85  Q
    |||| |||||| |||||  ||||||||||||||||||| |||||||||||    
T  25730986 aataaaagagtatgcaaaggtctctatttatagtgcattattacttaggg 25730937  T

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Target: chr5 (Bit Score: 73; Significance: 3e-33; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 23157354 - 23157510
Alignment:
Q  1 cttgacccttgccttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagagagtg-a 98  Q
    |||||||||||||||||||  | |  ||||||||| |||| || |||||||||| |||||| |||||| ||||||||||||||||||||||||||||| |    
T  23157354 cttgacccttgccttgtactgccaactttctgaatgaataaaatagtgtgcaagggtctctttttataatgcatgattacttaggggttaagagagtgaa 23157453  T
Q  99 aaatagggtttttccaccaaaaacggcttggaaaacaagcaaacatcacttcctccc 155  Q
    ||||| || ||||||||| ||||| |||||||||||||| ||||| |||||| ||||    
T  23157454 aaatatgggttttccacctaaaacagcttggaaaacaagaaaacaacacttcttccc 23157510  T

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Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 44 - 166
Target Start/End: Complemental strand, 25368140 - 25368017
Alignment:
Q  44 agtgtgcaagagtctctatttatagtgcatgattacttag-gggttaagagagtgaaaatagggtttttccaccaaaaacggcttggaaaacaagcaaac 142  Q
    |||||||||  ||||||||||||||||||||||||| ||  ||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||     
T  25368140 agtgtgcaatggtctctatttatagtgcatgattacgtacagggttaagagagtgaaaataggggttttccaccaaaaatggcttgaaaaacaagcaaat 25368041  T
Q  143 atcacttcctccctgtgtccatgc 166  Q
    |||||||| | | |||||||||||    
T  25368040 atcacttcttgcatgtgtccatgc 25368017  T

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Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 94
Target Start/End: Original strand, 7742455 - 7742548
Alignment:
Q  2 ttgacccttgccttgtaccactagttttctgaataat-acaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagaga 94  Q
    |||||||||||||||||||||||  ||| ||||| || | ||||||||||||| ||||||||||||| ||||| ||| ||||||||||||||||    
T  7742455 ttgacccttgccttgtaccactaactttttgaatgattaaaagagtgtgcaagggtctctatttataatgcatcattgcttaggggttaagaga 7742548  T

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Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 103
Target Start/End: Original strand, 18281789 - 18281884
Alignment:
Q  9 ttgccttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagagagtgaaaata 103  Q
    |||||||| ||  |||| ||||||||| || | ||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||| |||||    
T  18281789 ttgccttgcactgctagctttctgaatgaagaaaagagtgtgcaagggtcactatttatattgcatgattacttaggggttaagagagtggaaata 18281884  T

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Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 198 - 338
Target Start/End: Complemental strand, 19331814 - 19331664
Alignment:
Q  198 aattctgcagttttcgaccatttttcaagcgttcttctatcttgcgatgtcttggaacttcaaatgaagtttcttcactttgtattgt----------ct 287  Q
    |||| |||||||||||||| |||||||| ||||||||| | |||| |||||||  ||||||||||||  | ||||||| |||||||||          ||    
T  19331814 aattatgcagttttcgaccttttttcaaacgttcttctgttttgcaatgtcttataacttcaaatgacttatcttcacattgtattgtcttcaaatgtct 19331715  T
Q  288 tctaagaactattgaacttcaatcttcatatcctcgatccttcacgtgatg 338  Q
    ||||| ||  |||||| |||||||||||||||||||||||||||| |||||    
T  19331714 tctaaaaatcattgaatttcaatcttcatatcctcgatccttcacttgatg 19331664  T

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Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 169 - 288
Target Start/End: Original strand, 23157585 - 23157704
Alignment:
Q  169 ggggcgcatgaggcatcccctcttgcgcaaattctgcagttttcgaccatttttcaagcgttcttctatcttgcgatgtcttggaacttcaaatgaagtt 268  Q
    ||||||||||||| | | | || |||||||||||  |||||||||||| ||||||| |||||||||| |||||| |   |||||||||| ||||||| ||    
T  23157585 ggggcgcatgaggtagctcatcctgcgcaaattcaacagttttcgaccctttttcacgcgttcttctgtcttgcaaaaccttggaactttaaatgaactt 23157684  T
Q  269 tcttcactttgtattgtctt 288  Q
    |||||||||| | |||||||    
T  23157685 tcttcactttctgttgtctt 23157704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 2 - 111
Target Start/End: Complemental strand, 18178684 - 18178575
Alignment:
Q  2 ttgacccttgccttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagagagtgaaa 100  Q
    |||||| ||||||||||||| ||| ||| ||||| |||| || |||||||||| ||||||||| ||| ||||| ||||||||||||||||||||  ||||    
T  18178684 ttgaccattgccttgtaccattagctttttgaatgaataaaaaagtgtgcaagggtctctattgatattgcatcattacttaggggttaagaga-agaaa 18178586  T
Q  101 atagggttttt 111  Q
    ||| |||||||    
T  18178585 ataaggttttt 18178575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 16622207 - 16622300
Alignment:
Q  1 cttgacccttgccttgtaccactagttttctgaataa-tacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagag 93  Q
    |||||| ||||||||| |||||||| ||| ||||||| || |||  |||||||||||||||||||||| || |||||||||||| | |||||||    
T  16622207 cttgactcttgccttgaaccactagctttatgaataaataaaagtatgtgcaagagtctctatttataatgtatgattacttagagtttaagag 16622300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 20695175 - 20695088
Alignment:
Q  1 cttgacccttgccttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggt 87  Q
    ||||||||||||||| ||||||||| ||||||||| |||  ||  || |||||||||||||||||||||| ||| |||||||| ||||    
T  20695175 cttgacccttgccttctaccactagctttctgaatgaatgaaaaggtttgcaagagtctctatttatagtacatcattacttacgggt 20695088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 243 - 289
Target Start/End: Original strand, 18872907 - 18872953
Alignment:
Q  243 gatgtcttggaacttcaaatgaagtttcttcactttgtattgtcttc 289  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||||    
T  18872907 gatgtcttggaacttcaaatgaattttcttcaatttgtattgtcttc 18872953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 25681143 - 25681049
Alignment:
Q  1 cttgacccttgccttgtaccactagttttctgaataa-tacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagaga 94  Q
    |||||||||||||||| |||||||| ||||||||||| ||  |  ||||||||| ||||||||||||||   |||||| ||||||| ||||||||    
T  25681143 cttgacccttgccttgaaccactagctttctgaataattaataatgtgtgcaagtgtctctatttatagcaaatgatttcttagggtttaagaga 25681049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 7 - 94
Target Start/End: Original strand, 17695027 - 17695115
Alignment:
Q  7 ccttgccttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagaga 94  Q
    |||||||||||||  |||  ||| ||||| |||| ||| | |||||||| |||||||||||||||||| ||||||||||| ||||||||    
T  17695027 ccttgccttgtacatctaactttttgaatgaataaaagtgcgtgcaagactctctatttatagtgcatcattacttagggtttaagaga 17695115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 286 - 340
Target Start/End: Original strand, 11274238 - 11274292
Alignment:
Q  286 cttctaagaactattgaacttcaatcttcatatcctcgatccttcacgtgatgtc 340  Q
    ||||||||||| ||||  |||||||||||||||||| ||||||||| ||||||||    
T  11274238 cttctaagaaccattggtcttcaatcttcatatccttgatccttcatgtgatgtc 11274292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 286 - 339
Target Start/End: Original strand, 7742778 - 7742831
Alignment:
Q  286 cttctaagaactattgaacttcaatcttcatatcctcgatccttcacgtgatgt 339  Q
    ||||||||||| ||||| ||||| |||||||||| ||||| |||||||||||||    
T  7742778 cttctaagaaccattgatcttcagtcttcatatcttcgattcttcacgtgatgt 7742831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 340
Target Start/End: Original strand, 26329933 - 26330031
Alignment:
Q  251 ggaacttcaaatgaagtttcttcactttgtattgtctt----------ctaagaactattgaacttcaatcttcatatcctcgatccttcacgtgatgtc 340  Q
    ||||||| ||||||| ||||||||||||||||||||||          ||||| || ||||| |||||||||||||||||| ||||||||| ||||||||    
T  26329933 ggaacttgaaatgaattttcttcactttgtattgtcttaaaaaaccttctaaggaccattga-cttcaatcttcatatccttgatccttcatgtgatgtc 26330031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 218 - 289
Target Start/End: Original strand, 19763716 - 19763787
Alignment:
Q  218 tttttcaagcgttcttctatcttgcgatgtcttggaacttcaaatgaagtttcttcactttgtattgtcttc 289  Q
    |||||| |||||||||| ||||| | ||   ||||||||| ||||||| ||||||||||||||||| |||||    
T  19763716 tttttcgagcgttcttccatctttcaatcctttggaacttgaaatgaattttcttcactttgtattatcttc 19763787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 177
Target Start/End: Original strand, 24410546 - 24410665
Alignment:
Q  55 gtctctatttatagtgcatgattacttaggggttaagagagtgaaaataggg-tttttccaccaaaaacggcttggaaaacaagcaaacatcacttcctc 153  Q
    |||| |||||||||||||| || ||||||| |||||||||   ||| | ||| |||||||||||||    ||||||||||||||||||||  |||| ||     
T  24410546 gtctttatttatagtgcattataacttaggagttaagagaagaaaagtggggttttttccaccaaa----gcttggaaaacaagcaaacaatactttctg 24410641  T
Q  154 cctgtgtccatgcgtggggcgcat 177  Q
    ||||   ||||||| |||||||||    
T  24410642 cctgcagccatgcgcggggcgcat 24410665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 340
Target Start/End: Original strand, 24410842 - 24410892
Alignment:
Q  290 taagaactattgaacttcaatcttcatatcctcgatccttcacgtgatgtc 340  Q
    ||||||| ||||| ||| |||||||| ||||||||||||||| ||||||||    
T  24410842 taagaaccattgatcttgaatcttcagatcctcgatccttcatgtgatgtc 24410892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 331
Target Start/End: Complemental strand, 18178308 - 18178263
Alignment:
Q  286 cttctaagaactattgaacttcaatcttcatatcctcgatccttca 331  Q
    |||| |||||| ||||  ||||||||||||||||||||||||||||    
T  18178308 cttccaagaacaattggtcttcaatcttcatatcctcgatccttca 18178263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 82
Target Start/End: Original strand, 19763461 - 19763542
Alignment:
Q  2 ttgacccttgccttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattactta 82  Q
    |||||||||||||||||||||||| ||| ||||| |||| ||||||||  ||| |||  |||||||||| ||| | ||||||    
T  19763461 ttgacccttgccttgtaccactagctttttgaatgaataaaagagtgtataagggtccatatttatagtacatcactactta 19763542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 113
Target Start/End: Complemental strand, 20084006 - 20083929
Alignment:
Q  36 aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagagagtgaaaatagggtttttcc 113  Q
    |||| |||||| || ||| || |||||||||| | ||| |||||||||||||||| |||   ||||||||||||||||    
T  20084006 aataaaagagtatgaaagggtatctatttatattacatcattacttaggggttaacagaagaaaaatagggtttttcc 20083929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 24846674 - 24846613
Alignment:
Q  8 cttgccttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttatag 68  Q
    ||||||||||||||| | |||||||||| |||| ||| | |||||||||| |||||||||||    
T  24846674 cttgccttgtaccaccaattttctgaatgaataaaagtgcgtgcaagagtgtctatttatag 24846613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 340
Target Start/End: Complemental strand, 26070662 - 26070626
Alignment:
Q  304 cttcaatcttcatatcctcgatccttcacgtgatgtc 340  Q
    |||||||||||||||||| ||||||||| ||||||||    
T  26070662 cttcaatcttcatatccttgatccttcatgtgatgtc 26070626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 288
Target Start/End: Complemental strand, 30072366 - 30072330
Alignment:
Q  252 gaacttcaaatgaagtttcttcactttgtattgtctt 288  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  30072366 gaacttgaaatgaaatttcttcactttgtattgtctt 30072330  T

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Target: scaffold0065 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 5 - 135
Target Start/End: Complemental strand, 12818 - 12682
Alignment:
Q  5 acccttgccttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattactt-aggggttaa----gagagtga 98  Q
    |||||||||||||||| |||| ||||||||| |||| |   ||||||||| ||||||||||||||||||| ||||||| |||||||||    ||||||||    
T  12818 acccttgccttgtaccgctagctttctgaatgaataaactggtgtgcaagggtctctatttatagtgcataattactttaggggttaattaagagagtga 12719  T
Q  99 aaatagggtttttccaccaaaaacggcttggaaaaca 135  Q
    |||||||||||||||||| ||||||||||||||||||    
T  12718 aaatagggtttttccacccaaaacggcttggaaaaca 12682  T

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Target: scaffold0065; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 289
Target Start/End: Complemental strand, 12538 - 12457
Alignment:
Q  208 ttttcgaccatttttcaagcgttcttctatcttgcgatgtcttggaacttcaaatgaagtttcttcactttgtattgtcttc 289  Q
    ||||||||| ||||||   | |||||| |||||| || | |||||||||| |||| || ||||||||||||||||| |||||    
T  12538 ttttcgaccctttttcggcccttcttccatcttgtgacgccttggaacttgaaataaattttcttcactttgtattttcttc 12457  T

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Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 169 - 329
Target Start/End: Complemental strand, 11437753 - 11437583
Alignment:
Q  169 ggggcgcatgaggcatcccctcttgcgcaaattctgcagttttcgaccatttttcaagcgttcttctatcttgcgatgtcttggaacttcaaatgaagtt 268  Q
    ||||| ||||||| | ||||||||| |||||||||| ||||||||| | ||||||||| |||||||  |||||| |||  ||||||||||||||||| |     
T  11437753 ggggcacatgaggtaacccctcttgtgcaaattctgtagttttcgatcctttttcaagtgttcttccgtcttgcaatgctttggaacttcaaatgaatta 11437654  T
Q  269 tcttcactttgtattgt----------cttctaagaactattgaacttcaatcttcatatcctcgatcctt 329  Q
    |||||||| ||||||||          ||||||||||| ||||||||||||| |||||||||| |||||||    
T  11437653 tcttcactctgtattgtcttcaaatgtcttctaagaaccattgaacttcaattttcatatccttgatcctt 11437583  T

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Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 36 - 137
Target Start/End: Complemental strand, 18771441 - 18771340
Alignment:
Q  36 aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagagagtgaaaatagggtttttccaccaaaaacggcttggaaaaca 135  Q
    |||| ||||||||||||| ||||||||| | |||| ||||||||| |||| |||||||||||||||||||| |||||||||||||||   ||||||||||    
T  18771441 aataaaagagtgtgcaagggtctctattaagagtgtatgattactgagggattaagagagtgaaaataggggttttccaccaaaaacatattggaaaaca 18771342  T
Q  136 ag 137  Q
    ||    
T  18771341 ag 18771340  T

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Target: chr8; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 11437944 - 11437801
Alignment:
Q  1 cttgacccttgccttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagagagtgaa 99  Q
    ||||||||||||||||||| ||||| ||||| ||| |||| || |||||| ||  |||| |||||||  ||||| |||||||||||||||| ||||||||    
T  11437944 cttgacccttgccttgtactactagctttctaaatgaataaaatagtgtgtaatggtctatatttatgatgcatcattacttaggggttaacagagtgaa 11437845  T
Q  100 aatagggtttttccaccaaaaacggcttggaaaacaagcaaaca 143  Q
    |||| | ||||||||||||||    |||||||||||| ||||||    
T  11437844 aatatgatttttccaccaaaattaccttggaaaacaaacaaaca 11437801  T

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Target: chr8; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 2 - 103
Target Start/End: Complemental strand, 30544275 - 30544171
Alignment:
Q  2 ttgacccttgccttgtaccactag--ttttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagagagtga 98  Q
    ||||| ||||||||| ||||||||  |||||| ||| |||| ||||||||||||   ||||||||||||||| |||||||||||||||||||||||||||    
T  30544275 ttgactcttgccttgaaccactagccttttctaaatgaataaaagagtgtgcaatgatctctatttatagtgtatgattacttaggggttaagagagtga 30544176  T
Q  99 aaata 103  Q
    |||||    
T  30544175 aaata 30544171  T

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Target: chr8; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 176 - 340
Target Start/End: Original strand, 13583304 - 13583482
Alignment:
Q  176 atgaggcatcccctcttgcgcaaattctgcagttttcgaccatttttcaagcgttcttctatcttgcgatgtcttggaacttcaaatgaagtttctt--- 272  Q
    |||||||| |||||| || || |||| || ||||||||| | |||||| ||||||||||  |||||| ||  |||||||||||||||||| ||| ||       
T  13583304 atgaggcagcccctcatgtgcgaattatgtagttttcgatcttttttccagcgttcttccgtcttgcaataccttggaacttcaaatgaatttttttttt 13583403  T
Q  273 -cactttgtattgtctt----------ctaagaactattgaacttcaatcttcatatcctcgatccttcacgtgatgtc 340  Q
     ||||||||||||||||          |||||||| |||||||||||||| |||||||||||||||||||| |||||||    
T  13583404 tcactttgtattgtcttcaaatatcttctaagaaccattgaacttcaatcatcatatcctcgatccttcacttgatgtc 13583482  T

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Target: chr8; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 169 - 337
Target Start/End: Complemental strand, 30544095 - 30543916
Alignment:
Q  169 ggggcgcatgaggcatcccctcttgcgcaaattctgcagttttcgaccatttttcaagcgttcttctatcttgcgatgtcttggaacttcaaatgaagtt 268  Q
    ||||| ||||||||| |||||| ||| | | ||| ||||||||||||| |||||||  | ||||||   ||||| ||| |||||||||| ||||||| ||    
T  30544095 ggggcacatgaggcaacccctcatgcacgatttcagcagttttcgaccctttttcactcattcttccgccttgcaatgccttggaacttgaaatgaattt 30543996  T
Q  269 tcttcactttgtattgtct-------tct----aagaactattgaacttcaatcttcatatcctcgatccttcacgtgat 337  Q
    |||||||||| ||||||||       |||    |||||| ||||||||||||||||||||||||| |||||||| |||||    
T  30543995 tcttcactttatattgtctttaaatatcttttaaagaaccattgaacttcaatcttcatatcctcaatccttcatgtgat 30543916  T

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Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 197 - 332
Target Start/End: Complemental strand, 5154063 - 5153918
Alignment:
Q  197 aaattctgcagttttcgaccatttttcaagcgttcttctatcttgcgatgtcttggaacttcaaatgaagtttcttcactttgtattgtcttctaagaac 296  Q
    ||||| ||||||||||| || |||||| ||| ||||||  |||||| |||||||||||||| ||||||| ||| ||||  || |||||||||| || | |    
T  5154063 aaattttgcagttttcgtccctttttcgagcattcttccgtcttgcaatgtcttggaacttgaaatgaattttattcatgttatattgtcttcaaaaacc 5153964  T
Q  297 t----------attgaacttcaatcttcatatcctcgatccttcac 332  Q
    |          ||||| |||||||||||||||||||||||||||||    
T  5153963 ttccaataatcattgatcttcaatcttcatatcctcgatccttcac 5153918  T

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Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 103
Target Start/End: Complemental strand, 18786184 - 18786125
Alignment:
Q  44 agtgtgcaagagtctctatttatagtgcatgattacttaggggttaagagagtgaaaata 103  Q
    |||||||||  ||||| ||| |||||| |||||||||||||| |||||||||||||||||    
T  18786184 agtgtgcaaaggtctcaattaatagtgtatgattacttagggattaagagagtgaaaata 18786125  T

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Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 141
Target Start/End: Original strand, 24927470 - 24927565
Alignment:
Q  46 tgtgcaagagtctctatttatagtgcatgattacttaggggttaagagagtgaaaatagggtttttccaccaaaaacggcttggaaaacaagcaaa 141  Q
    |||||||| ||||||||||||| |  |||||||||||||||||||||||  ||||| | |||||| |   |||||||||||  ||||||| |||||    
T  24927470 tgtgcaagggtctctatttatattagatgattacttaggggttaagagaaagaaaacatggttttccattcaaaaacggctaagaaaacatgcaaa 24927565  T

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Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 286 - 337
Target Start/End: Complemental strand, 29291976 - 29291925
Alignment:
Q  286 cttctaagaactattgaacttcaatcttcatatcctcgatccttcacgtgat 337  Q
    ||||||||||| ||||| ||||||| |||||||||||||| |||||||||||    
T  29291976 cttctaagaaccattgatcttcaatattcatatcctcgattcttcacgtgat 29291925  T

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Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 286 - 340
Target Start/End: Original strand, 28292009 - 28292063
Alignment:
Q  286 cttctaagaactattgaacttcaatcttcatatcctcgatccttcacgtgatgtc 340  Q
    ||||||||||| ||| | ||||||||||||||||||| |||||||| ||||||||    
T  28292009 cttctaagaaccattaatcttcaatcttcatatcctcaatccttcatgtgatgtc 28292063  T

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Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 111
Target Start/End: Original strand, 30850623 - 30850731
Alignment:
Q  2 ttgacccttgccttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagagagtgaaa 100  Q
    ||||||||||||||||||| |||| ||||||||| |||| |||| | |||| | ||||||||||| | |  || |||||||||||||||||||| |||||    
T  30850623 ttgacccttgccttgtaccgctagctttctgaatgaataaaagaatttgcatgggtctctatttacaat-aatcattacttaggggttaagaga-tgaaa 30850720  T
Q  101 atagggttttt 111  Q
     |||| |||||    
T  30850721 ttaggcttttt 30850731  T

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Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 340
Target Start/End: Complemental strand, 32239585 - 32239440
Alignment:
Q  205 cagttttcgaccatttttcaagcgttcttctatcttgcgatgtcttggaacttcaaatgaagtttcttcactttgtattgt----------cttctaaga 294  Q
    ||||||| |||| ||||||   |||| |||| |||||| ||| |||| ||||| ||||||| |||||||||||| ||||||          ||| ||| |    
T  32239585 cagtttttgaccctttttcgcccgtttttctgtcttgcaatgccttgaaacttgaaatgaattttcttcactttttattgtctttaagaaccttataaaa 32239486  T
Q  295 actattgaacttcaatcttcatatcctcgatccttcacgtgatgtc 340  Q
    || ||||||||||||||||||||||||  |||||||| ||||||||    
T  32239485 accattgaacttcaatcttcatatcctttatccttcatgtgatgtc 32239440  T

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Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 248 - 289
Target Start/End: Original strand, 22894392 - 22894433
Alignment:
Q  248 cttggaacttcaaatgaagtttcttcactttgtattgtcttc 289  Q
    |||||||||||||| ||| |||||||||||||||||||||||    
T  22894392 cttggaacttcaaaagaattttcttcactttgtattgtcttc 22894433  T

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Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 92
Target Start/End: Complemental strand, 23876480 - 23876395
Alignment:
Q  8 cttgccttgtaccactagttttctgaataa-tacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaaga 92  Q
    |||||||| |||| |||| || || ||||| || |||| |||| ||| ||||||||||||||||||| |||||||| |||||||||    
T  23876480 cttgccttataccgctagcttgctaaataaataaaagaatgtgtaagtgtctctatttatagtgcatcattacttaagggttaaga 23876395  T

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Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 90
Target Start/End: Complemental strand, 28075034 - 28074945
Alignment:
Q  2 ttgacccttgccttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaa 90  Q
    |||||||||| ||| |||  ||||  |||||||| |||| || ||||| |||  ||||||||||||||||||| ||||||||||||||||    
T  28075034 ttgacccttgtcttatactgctagccttctgaatgaataaaatagtgtacaaaggtctctatttatagtgcataattacttaggggttaa 28074945  T

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Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 338
Target Start/End: Original strand, 6888105 - 6888153
Alignment:
Q  290 taagaactattgaacttcaatcttcatatcctcgatccttcacgtgatg 338  Q
    ||||||| ||||| |||||||||||||||||||||| || |||||||||    
T  6888105 taagaaccattgatcttcaatcttcatatcctcgatactgcacgtgatg 6888153  T

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Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 55 - 94
Target Start/End: Original strand, 6887828 - 6887867
Alignment:
Q  55 gtctctatttatagtgcatgattacttaggggttaagaga 94  Q
    ||||||||||||||||||| ||||||||| ||||||||||    
T  6887828 gtctctatttatagtgcatcattacttagaggttaagaga 6887867  T

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Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 232 - 332
Target Start/End: Original strand, 30850944 - 30851054
Alignment:
Q  232 ttctatcttgcgatgtcttggaacttcaaatgaagtttcttcactttgtattgtcttc----------taagaactattgaacttcaatcttcatatcct 321  Q
    ||||||||||| ||| |||||||||| |||| || ||||||||||||||||| | |||          |||||||  |||| ||||||||||||||||||    
T  30850944 ttctatcttgcaatgacttggaacttgaaattaattttcttcactttgtattatattcaaagacattctaagaaccgttgatcttcaatcttcatatcct 30851043  T
Q  322 cgatccttcac 332  Q
     ||||||||||    
T  30851044 tgatccttcac 30851054  T

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Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 5569740 - 5569833
Alignment:
Q  1 cttgacccttgccttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagaga 94  Q
    ||||| |||||||||| |||  ||||||||||||| |||| ||| ||||| ||| |||||||||||||    |||||||||||||| ||||||||    
T  5569740 cttgatccttgccttgaaccgttagttttctgaatgaataaaagtgtgtg-aagggtctctatttataacaaatgattacttagggtttaagaga 5569833  T

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Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 322
Target Start/End: Complemental strand, 31436742 - 31436643
Alignment:
Q  229 ttcttctatcttgcgatgtcttggaacttcaaatgaagtttcttcactttgtattgtctt-------ctaagaactattgaacttcaatcttcatatcct 321  Q
    ||||||| |||||| ||| |||||||||| |||| || ||| ||||||||||||||||||       |||||||| ||||| | ||||||||||||||||    
T  31436742 ttcttctgtcttgcaatgccttggaacttgaaat-aatttttttcactttgtattgtcttcaaatacctaagaaccattgatcgtcaatcttcatatcct 31436644  T

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Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 141
Target Start/End: Complemental strand, 14184443 - 14184326
Alignment:
Q  26 ttttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattactta-ggggttaagagagtgaaaatagggtttttccaccaaaaacg 123  Q
    |||||||||| |||| ||| |||||||||  |||||||||||||   ||||||||||| ||||||||||||  ||||| ||| |||| |    |||| |     
T  14184443 ttttctgaatcaataaaagtgtgtgcaaggttctctatttatagcagatgattacttagggggttaagagaaagaaaacaggattttccattgaaaagca 14184344  T
Q  124 gcttggaaaacaagcaaa 141  Q
    ||||||||||||||||||    
T  14184343 gcttggaaaacaagcaaa 14184326  T

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Target: scaffold0011 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 170 - 289
Target Start/End: Original strand, 227969 - 228088
Alignment:
Q  170 gggcgcatgaggcatcccctcttgcgcaaattctgcagttttcgaccatttttcaagcgttcttctatcttgcgatgtcttggaacttcaaatgaagttt 269  Q
    |||||| |||| || || ||| ||||| ||||| ||| ||||||||| |||||||  ||||||||  |||||| |||||||||||||| ||||||| |||    
T  227969 gggcgcttgagacagcctctcctgcgcgaattcagcaattttcgaccctttttcacccgttcttccgtcttgcaatgtcttggaacttgaaatgaatttt 228068  T
Q  270 cttcactttgtattgtcttc 289  Q
    ||||||||||||||||||||    
T  228069 cttcactttgtattgtcttc 228088  T

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Target: scaffold0011; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 91 - 178
Target Start/End: Original strand, 227818 - 227905
Alignment:
Q  91 gagagtgaaaatagggtttttccaccaaaaacggcttggaaaacaagcaaacatcacttcctccctgtgtccatgcgtggggcgcatg 178  Q
    ||||||||||||| |||||||| ||||||||  |||||||||||||| ||||| ||||||||   |||||||||| ||||||| ||||    
T  227818 gagagtgaaaatatggtttttcaaccaaaaatagcttggaaaacaagaaaacagcacttcctggttgtgtccatgtgtggggctcatg 227905  T

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Target: scaffold0337 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 6 - 112
Target Start/End: Complemental strand, 3684 - 3573
Alignment:
Q  6 cccttgccttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttagggg----ttaagagagtgaaa 100  Q
    ||||| || |||||| |||||||| ||||| |||| |  |||||||||| ||||||||||||||||||| ||||||||||||    ||||||||||||||    
T  3684 cccttaccctgtaccgctagttttatgaatgaataaactagtgtgcaagggtctctatttatagtgcataattacttaggggataattaagagagtgaaa 3585  T
Q  101 atagggtttttc 112  Q
    ||||||||||||    
T  3584 atagggtttttc 3573  T

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Target: scaffold0337; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 289
Target Start/End: Complemental strand, 2102 - 2021
Alignment:
Q  208 ttttcgaccatttttcaagcgttcttctatcttgcgatgtcttggaacttcaaatgaagtttcttcactttgtattgtcttc 289  Q
    ||||||||| ||||||   | |||||| |||||| || | |||||||||| |||| || ||||||||||||||||| |||||    
T  2102 ttttcgaccctttttcggcccttcttccatcttgtgacgccttggaacttgaaataaattttcttcactttgtattttcttc 2021  T

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Target: scaffold0337; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 340
Target Start/End: Complemental strand, 1997 - 1961
Alignment:
Q  304 cttcaatcttcatatcctcgatccttcacgtgatgtc 340  Q
    |||||||||||||||| || |||||||||||||||||    
T  1997 cttcaatcttcatatcgtcaatccttcacgtgatgtc 1961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 9e-18; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 22262925 - 22262835
Alignment:
Q  1 cttgacccttgccttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaa 90  Q
    |||||||||||||||| ||| |||| ||||| ||| |||| ||| |||||||||||||||||||||| |||||| ||||||||||| ||||    
T  22262925 cttgacccttgccttgaaccgctagctttctcaatgaataaaagtgtgtgcaagagtctctatttatggtgcatcattacttagggtttaa 22262835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 195 - 335
Target Start/End: Original strand, 26499655 - 26499804
Alignment:
Q  195 gcaaattctgcagttttcgaccatttttcaagcgttcttctatcttgcgatgtcttggaacttcaaatgaagtttcttcactttgtattgtcttc----- 289  Q
    ||||||| |||||||||||  | |||||| |||||| |||  |||||| ||| |||| ||||| ||||||| |||||| ||||||||||||||||         
T  26499655 gcaaattttgcagttttcgttc-tttttcgagcgttgttccgtcttgcaatgccttgaaacttgaaatgaattttctttactttgtattgtcttcaaaaa 26499753  T
Q  290 -----taagaactattgaacttcaatcttcatatcctcgatccttcacgtg 335  Q
         ||||||| ||||| ||||||||||||||||||||||| ||||||||    
T  26499754 ccttctaagaaccattgatcttcaatcttcatatcctcgatctttcacgtg 26499804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 178
Target Start/End: Complemental strand, 28178531 - 28178365
Alignment:
Q  13 cttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagagagtgaaaatagggttttt 111  Q
    ||||||||||||| ||||||||| |||| || |||  ||||||| || |||||||||||||||  ||| ||||| ||||   ||||||||| ||| ||||    
T  28178531 cttgtaccactagctttctgaatgaataaaatagtcggcaagagcctatatttatagtgcatggctacatagggattaaagaagtgaaaattggggtttt 28178432  T
Q  112 ccaccaaaaacggcttggaaaacaagcaaacatcacttcctccctgtgtccatgcgtggggcgcatg 178  Q
    ||| |||||||| ||||  |   ||||||||| ||||||||  |||| |||||||  ||||||||||    
T  28178431 ccaacaaaaacgacttgagagttaagcaaacaacacttcctagctgtttccatgcacggggcgcatg 28178365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 10976638 - 10976710
Alignment:
Q  2 ttgacccttgccttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcat 73  Q
    ||||||||  |||||||||| ||||||||||||| |||| ||| |||||| ||||||||||||||||||||||    
T  10976638 ttgaccctctccttgtaccaatagttttctgaatgaataaaagtgtgtgccagagtctctatttatagtgcat 10976710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 112
Target Start/End: Original strand, 17198379 - 17198487
Alignment:
Q  5 acccttgccttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagagagtgaaaata 103  Q
    |||||||||||||| | |||||||| | ||| |||| |||||| |||||| ||||||||||| | | ||| ||||||||||||||||||||   ||||||    
T  17198379 acccttgccttgtatcgctagttttataaatgaataaaagagtatgcaagggtctctatttagaatacatcattacttaggggttaagagaagaaaaata 17198478  T
Q  104 gggtttttc 112  Q
    ||| |||||    
T  17198479 ggggttttc 17198487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 9396170 - 9396264
Alignment:
Q  1 cttgacccttgccttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagaga 94  Q
    ||||||||||||||||||||||||  ||| ||||| ||||  || ||||||| |||||| |||||||||||||| ||| |||| || ||||||||    
T  9396170 cttgacccttgccttgtaccactatctttttgaatgaataagagtgtgtgcacgagtctatatttatagtgcatcatttcttaaggtttaagaga 9396264  T

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Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 286 - 336
Target Start/End: Complemental strand, 30355523 - 30355473
Alignment:
Q  286 cttctaagaactattgaacttcaatcttcatatcctcgatccttcacgtga 336  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||| ||||    
T  30355523 cttctaagaacgattgatcttcaatcttcatatcctcgatccttcatgtga 30355473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 141
Target Start/End: Complemental strand, 15318564 - 15318459
Alignment:
Q  36 aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagagagtgaaaatagggtttttccaccaaaaacggcttggaaaaca 135  Q
    |||| ||| ||| ||||||||||||||| ||||||||| ||||| || ||||||| |||   |||||| ||||||||||| |||| | ||||| ||||||    
T  15318564 aataaaagtgtgcgcaagagtctctattcatagtgcatcattacgtatgggttaaaagatgaaaaataaggtttttccactaaaatcagcttgaaaaaca 15318465  T
Q  136 agcaaa 141  Q
    | ||||    
T  15318464 aacaaa 15318459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 91
Target Start/End: Original strand, 12971956 - 12972011
Alignment:
Q  36 aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaag 91  Q
    |||| |||||| |||||| ||||||||||||||||||| ||||| |||||||||||    
T  12971956 aataaaagagtctgcaagggtctctatttatagtgcatcattacgtaggggttaag 12972011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 32930051 - 32930133
Alignment:
Q  13 cttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagaga 94  Q
    |||||||| |||| ||||||||| |||| ||| || |||||||||||||||||||| || || ||||||||||  ||||||||    
T  32930051 cttgtaccgctagctttctgaatgaataaaagtgtatgcaagagtctctatttataatggatcattacttaggaattaagaga 32930133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 208 - 289
Target Start/End: Original strand, 24507263 - 24507344
Alignment:
Q  208 ttttcgaccatttttcaagcgttcttctatcttgcgatgtcttggaacttcaaatgaagtttcttcactttgtattgtcttc 289  Q
    ||||||||| ||||||   | ||||||||||||| || | |||||||||| |||| || ||||||||||||||||| |||||    
T  24507263 ttttcgaccctttttcggcccttcttctatcttgtgacgccttggaacttgaaataaattttcttcactttgtattttcttc 24507344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 218 - 285
Target Start/End: Original strand, 17198652 - 17198719
Alignment:
Q  218 tttttcaagcgttcttctatcttgcgatgtcttggaacttcaaatgaagtttcttcactttgtattgt 285  Q
    |||||| |||| |||||| |||||| ||| |||||||||| |||| || ||| |||||||||||||||    
T  17198652 tttttcgagcgatcttctgtcttgcaatgccttggaactttaaataaattttattcactttgtattgt 17198719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 290 - 337
Target Start/End: Original strand, 33638417 - 33638464
Alignment:
Q  290 taagaactattgaacttcaatcttcatatcctcgatccttcacgtgat 337  Q
    ||||||| ||||| |||||||||||||||||| |||||||||| ||||    
T  33638417 taagaaccattgatcttcaatcttcatatccttgatccttcacttgat 33638464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 340
Target Start/End: Original strand, 12972293 - 12972347
Alignment:
Q  286 cttctaagaactattgaacttcaatcttcatatcctcgatccttcacgtgatgtc 340  Q
    |||| |||||| ||||| |||||||||||||||| |||||| ||||||| |||||    
T  12972293 cttcaaagaaccattgatcttcaatcttcatatcatcgatctttcacgttatgtc 12972347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 141
Target Start/End: Complemental strand, 15349198 - 15349108
Alignment:
Q  51 aagagtctctatttatagtgcatgattacttaggggttaagagagtgaaaatagggtttttccaccaaaaacggcttggaaaacaagcaaa 141  Q
    |||||||||||||||||||  || ||||| || ||||||| |||   |||||||||||||||||| |||| |  |||| ||||||| ||||    
T  15349198 aagagtctctatttatagtatattattacgtatgggttaaaagatgaaaaatagggtttttccactaaaatcaacttgaaaaacaaacaaa 15349108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 110
Target Start/End: Complemental strand, 15369209 - 15369135
Alignment:
Q  36 aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagagagtgaaaatagggtttt 110  Q
    |||| ||| ||| |||||| |||||||||||||||||| ||||| || ||||||| |||   |||||||||||||    
T  15369209 aataaaagtgtgcgcaagaatctctatttatagtgcatcattacgtatgggttaaaagatgaaaaatagggtttt 15369135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 289
Target Start/End: Complemental strand, 15575175 - 15575137
Alignment:
Q  251 ggaacttcaaatgaagtttcttcactttgtattgtcttc 289  Q
    ||||||| ||||||| |||||||||||||||||||||||    
T  15575175 ggaacttgaaatgaattttcttcactttgtattgtcttc 15575137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 112
Target Start/End: Complemental strand, 15375920 - 15375857
Alignment:
Q  49 gcaagagtctctatttatagtgcatgattacttaggggttaagagagtgaaaat-agggtttttc 112  Q
    ||||||||||||||||||||||||| ||||| || | ||||| ||| ||||||| ||||||||||    
T  15375920 gcaagagtctctatttatagtgcatcattacgtatgagttaaaaga-tgaaaataagggtttttc 15375857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 287
Target Start/End: Original strand, 17860312 - 17860348
Alignment:
Q  251 ggaacttcaaatgaagtttcttcactttgtattgtct 287  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  17860312 ggaacttgaaatgaattttcttcactttgtattgtct 17860348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 340
Target Start/End: Original strand, 24507368 - 24507404
Alignment:
Q  304 cttcaatcttcatatcctcgatccttcacgtgatgtc 340  Q
    |||||||||||||||| || |||||||||||||||||    
T  24507368 cttcaatcttcatatcgtcaatccttcacgtgatgtc 24507404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1149 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold1149
Description:

Target: scaffold1149; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 209 - 289
Target Start/End: Complemental strand, 2080 - 2000
Alignment:
Q  209 tttcgaccatttttcaagcgttcttctatcttgcgatgtcttggaacttcaaatgaagtttcttcactttgtattgtcttc 289  Q
    |||||||| |||||||  ||||||||| |||||| | || ||||||||| ||||||| |||||| ||||||||||||||||    
T  2080 tttcgaccctttttcacccgttcttctgtcttgcaaagtattggaacttgaaatgaattttctttactttgtattgtcttc 2000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1149; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 104
Target Start/End: Complemental strand, 2301 - 2246
Alignment:
Q  47 gtgcaagagtctctatttatagtgcatgattacttaggggttaagagagtgaaaatag 104  Q
    |||||||||||||||||||  |||||  ||||||||||||||||| |||| |||||||    
T  2301 gtgcaagagtctctattta--gtgcaatattacttaggggttaagggagtaaaaatag 2246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0650 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 286 - 340
Target Start/End: Original strand, 5678 - 5731
Alignment:
Q  286 cttctaagaactattgaacttcaatcttcatatcctcgatccttcacgtgatgtc 340  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||    
T  5678 cttctaagaaccattgaa-ttcaatcttcatatcctcgatccttcatgtgatgtc 5731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 287 - 340
Target Start/End: Original strand, 26864 - 26917
Alignment:
Q  287 ttctaagaactattgaacttcaatcttcatatcctcgatccttcacgtgatgtc 340  Q
    |||||||||| ||||||||||||| |||||||||| |||| |||||||||||||    
T  26864 ttctaagaaccattgaacttcaattttcatatccttgatctttcacgtgatgtc 26917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 5 - 120
Target Start/End: Original strand, 11239 - 11355
Alignment:
Q  5 acccttgccttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagagagtgaaaata 103  Q
    ||||||||||||||| || || ||| ||||| |||| || |||||||||| ||||||||||||||| ||| |||||||| || |||  ||| | ||||||    
T  11239 acccttgccttgtactacaagctttttgaatgaataaaaaagtgtgcaagtgtctctatttatagtacatcattacttaaggattacaagaataaaaata 11338  T
Q  104 gggtttttccaccaaaa 120  Q
     |||||||  |||||||    
T  11339 aggttttttaaccaaaa 11355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 289
Target Start/End: Original strand, 11548 - 11599
Alignment:
Q  237 tcttgcgatgtcttggaacttcaaatgaagtttcttcactttgtattgtcttc 289  Q
    |||||| ||| |||||| ||| ||||||| |||||||||||||||||||||||    
T  11548 tcttgcaatgccttgga-cttgaaatgaattttcttcactttgtattgtcttc 11599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0185 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0185
Description:

Target: scaffold0185; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 198 - 289
Target Start/End: Complemental strand, 2804 - 2713
Alignment:
Q  198 aattctgcagttttcgaccatttttcaagcgttcttctatcttgcgatgtcttggaacttcaaatgaagtttcttcactttgtattgtcttc 289  Q
    |||| ||||||||||| || |||||| || ||||||||||||||   | ||||||||| | ||||||  |||||||||| ||||||||||||    
T  2804 aattttgcagttttcgtccctttttcgagtgttcttctatcttgacctatcttggaacatgaaatgagttttcttcactctgtattgtcttc 2713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 341
Target Start/End: Complemental strand, 58941 - 58897
Alignment:
Q  297 tattgaacttcaatcttcatatcctcgatccttcacgtgatgtcc 341  Q
    |||| ||||||||||||||||| |||||||||||| |||||||||    
T  58941 tattaaacttcaatcttcatattctcgatccttcatgtgatgtcc 58897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 289
Target Start/End: Complemental strand, 59038 - 58963
Alignment:
Q  213 gaccatttttcaagcgttcttctatcttgcgatgtcttggaacttcaaatgaagtttcttcactttgtattgtcttc 289  Q
    |||| ||||||||||||||||   ||||| |||  |||||||||| ||||||| |||||||| |||| |||||||||    
T  59038 gaccctttttcaagcgttctttcgtcttgtgataccttggaactttaaatgaa-tttcttcattttgcattgtcttc 58963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0836 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0836
Description:

Target: scaffold0836; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 286
Target Start/End: Complemental strand, 2886 - 2824
Alignment:
Q  224 aagcgttcttctatcttgcgatgtcttggaacttcaaatgaagtttcttcactttgtattgtc 286  Q
    |||||||||| | ||||| |||  |||||| ||| ||||||| ||||||||||||||||||||    
T  2886 aagcgttcttttgtcttgtgataccttggatctttaaatgaattttcttcactttgtattgtc 2824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 340
Target Start/End: Complemental strand, 21604 - 21550
Alignment:
Q  286 cttctaagaactattgaacttcaatcttcatatcctcgatccttcacgtgatgtc 340  Q
    ||||||||||| ||||| |||||||||||||||| | ||||||||| || |||||    
T  21604 cttctaagaaccattgatcttcaatcttcatatcattgatccttcatgtaatgtc 21550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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