View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7443_low_4 (Length: 336)

Name: NF7443_low_4
Description: NF7443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7443_low_4
NF7443_low_4
[»] chr4 (17 HSPs)
chr4 (1-309)||(27508431-27508739)
chr4 (58-308)||(27503544-27503794)
chr4 (58-307)||(27524146-27524394)
chr4 (58-288)||(27468624-27468855)
chr4 (58-292)||(27475853-27476088)
chr4 (57-289)||(27514505-27514736)
chr4 (1-58)||(27524047-27524104)
chr4 (4-56)||(27468899-27468951)
chr4 (1-56)||(27514416-27514471)
chr4 (10-54)||(27556962-27557006)
chr4 (5-52)||(27503452-27503499)
chr4 (5-51)||(27489638-27489684)
chr4 (75-167)||(27517383-27517475)
chr4 (4-52)||(27476133-27476181)
chr4 (12-56)||(27506280-27506324)
chr4 (12-56)||(27479400-27479444)
chr4 (12-56)||(27486460-27486504)


Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 27508431 - 27508739
Alignment:
Q  1 tcagcattgtcataatgaagaaaacatgtcttcagcatgtttacaaaattatgaaggacatctcatttggtaggaagtggaagctttgtattggacattg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27508431 tcagcattgtcataatgaagaaaacatgtcttcagcatgtttataaaattatgaaggacatctcatttggtaggaagtggaagctttgtattggacattg 27508530  T
Q  101 tgtaagaaggtagggtacactctaagacaacaccacatgctaccttatcactatgctctctatccttccaccccttcaataatagtttttctaggaattg 200  Q
    | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27508531 tttaagaaggtagggtacactctaagacagcaccacatgctaccttatcactatgctctctatccttccaccccttcaataatagtttttctaggaattg 27508630  T
Q  201 ggttttgagataacttcaaactctataaatacacttcatctctccttcacaaacagcacaactcattagcttcatcaattacttagttacatccttctta 300  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  27508631 ggttttgagataacttcaaactctataaatacacttcctctctccttcacaaacagcacaactcattagcatcatcaattacttagttacatccttctta 27508730  T
Q  301 cttttgata 309  Q
    |||||||||    
T  27508731 cttttgata 27508739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 58 - 308
Target Start/End: Original strand, 27503544 - 27503794
Alignment:
Q  58 acatctcatttggtaggaagtggaagctttgtattggacattgtgtaagaa-ggtagggtacactctaagacaacaccacatgctaccttatcactatgc 156  Q
    |||||| ||||  ||| ||||||||||||||||||||||||||| || ||| ||||||| ||||||||||||||||||||||||||| ||||| |||||     
T  27503544 acatcttattttttagcaagtggaagctttgtattggacattgtttaggaaaggtaggggacactctaagacaacaccacatgctacattatccctatga 27503643  T
Q  157 tctctatccttccaccccttcaataatagtttttctaggaattgggttttgagataacttcaaactctataaatacacttcatctctccttcacaaacag 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  27503644 tctctatccttccaccccttcaataatagtttttctaggaattgggttttgagataacttcaaactctataaatacacttcctctctccttcacaaacag 27503743  T
Q  257 cacaactcattagcttcatcaattacttagttacatccttcttacttttgat 308  Q
    ||||| ||||| || ||||||| |||||| |||||||| |||||| ||||||    
T  27503744 cacaattcatt-gcatcatcaaatacttaattacatccatcttacatttgat 27503794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 58 - 307
Target Start/End: Original strand, 27524146 - 27524394
Alignment:
Q  58 acatctcatttggtaggaagtggaagctttgtattggacattgtgtaagaaggtagggtacactctaagacaacaccacatgctaccttatcactatgct 157  Q
    |||||||||||||||| || |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |    
T  27524146 acatctcatttggtagcaattggaagctttgtattggatattgtttaagaaggtagggtacactctaagacaacaccacatgctaccttatccctatgat 27524245  T
Q  158 ctctatccttccaccccttcaataatagtttttctaggaattgggttttgagataacttcaaactctataaatacacttcatctctccttcacaaacagc 257  Q
    || |||||||| ||||||||||||||||||||||| | |||| || ||||||| ||||| ||| |||||| ||| ||||| ||||||||||||||||||     
T  27524246 ctatatccttcaaccccttcaataatagtttttcttgaaatttgggtttgagagaactttaaaatctatatataaacttcctctctccttcacaaacaga 27524345  T
Q  258 acaactcattagcttcatcaattacttagttacatccttcttacttttga 307  Q
    | |||||||| || | ||||| || ||||||||||||||| ||| |||||    
T  27524346 aaaactcatt-gcattatcaaatatttagttacatccttcatacatttga 27524394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 58 - 288
Target Start/End: Complemental strand, 27468855 - 27468624
Alignment:
Q  58 acatctcatttggtaggaagtggaagctttgtattggacatt-gtgtaagaaggtagggtacactctaagacaacaccacatgctaccttatcactatgc 156  Q
    |||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||  |||||||| ||||||    
T  27468855 acatctcatttggtagcaagtggaagctttgtattggacatttgtttaagaaggtagggtacactcttagacaacaccacatgagaccttatccctatgc 27468756  T
Q  157 tctctatccttccaccccttcaataatagtttttctaggaattgggttttgagataacttcaaactctataaatacacttcatctctccttcacaaacag 256  Q
    ||||||||| || | ||||||||||||||||||| | | |||| | |||||||| ||||||||| |||||||||||||||| |||| |||||||||||||    
T  27468755 tctctatccatcaaacccttcaataatagtttttgttgaaatttgattttgagagaacttcaaaatctataaatacacttcctctcgccttcacaaacag 27468656  T
Q  257 cacaactcattagcttcatcaattacttagtt 288  Q
     |||||||||| || ||||||| || ||||||    
T  27468655 gacaactcattggcatcatcaaatatttagtt 27468624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 58 - 292
Target Start/End: Complemental strand, 27476088 - 27475853
Alignment:
Q  58 acatctcatttggtaggaagtggaagctttgtattggacattgtgtaagaa-ggtagggtacactctaagacaacaccacatgctaccttatcactatgc 156  Q
    |||||| ||||  ||| ||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||| |||||||||||||| || |||    
T  27476088 acatcttattttttagcaagtggaagctttgtattggacattgtttaggaaaggtagggtacactctaagacaacaccccatgctaccttatccctgtgc 27475989  T
Q  157 tctctatccttccaccccttcaataatagtttttctaggaattgggttttgagataacttcaaactctataaatacacttcatctctccttcacaaacag 256  Q
    ||||||||| || | ||||||||||||||||| ||| | |||| |||||||||| ||||||||| |||||||||||||||| ||||||||||| ||||||    
T  27475988 tctctatccatcaaacccttcaataatagtttctcttgaaatttggttttgagagaacttcaaaatctataaatacacttcctctctccttcataaacag 27475889  T
Q  257 cacaactcattagcttcatcaattacttagttacat 292  Q
    ||||||| ||| || ||||||| || ||||||||||    
T  27475888 cacaactgattggcatcatcaaatatttagttacat 27475853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 57 - 289
Target Start/End: Original strand, 27514505 - 27514736
Alignment:
Q  57 gacatctcatttggtaggaagtggaagctttgtattggacatt-gtgtaagaaggtagggtacactctaagacaacaccacatgctaccttatcactatg 155  Q
    ||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||  |||||||| |||||    
T  27514505 gacatctcatttggtagcaagtggaagctttgtattggacatttgtttaagaaggtagggtacactcttagacaacaccacatgagaccttatccctatg 27514604  T
Q  156 ctctctatccttccaccccttcaataatagtttttctaggaattgggttttgagataacttcaaactctataaatacacttcatctctccttcacaaaca 255  Q
    |||||||||| || | ||||||||||||||||| ||| | |||| |||| ||||| ||||||||| |||||||||||||||| ||||||||||| ||  |    
T  27514605 ctctctatccatcaaacccttcaataatagtttctcttgaaatttggttctgagagaacttcaaaatctataaatacacttcctctctccttcataa--a 27514702  T
Q  256 gcacaactcattagcttcatcaattacttagtta 289  Q
    |||||||||||| || ||||||| || |||||||    
T  27514703 gcacaactcattggcatcatcaagtatttagtta 27514736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 27524047 - 27524104
Alignment:
Q  1 tcagcattgtcataatgaagaaaacatgtcttcagcatgtttacaaaattatgaagga 58  Q
    |||||||| ||||||||||||||||||||||  ||||||||||| |||||||||||||    
T  27524047 tcagcattatcataatgaagaaaacatgtctgaagcatgtttacgaaattatgaagga 27524104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 56
Target Start/End: Complemental strand, 27468951 - 27468899
Alignment:
Q  4 gcattgtcataatgaagaaaacatgtcttcagcatgtttacaaaattatgaag 56  Q
    ||||| ||||||||||||||||||||||  |||||||||||||||||||||||    
T  27468951 gcattatcataatgaagaaaacatgtctgaagcatgtttacaaaattatgaag 27468899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 27514416 - 27514471
Alignment:
Q  1 tcagcattgtcataatgaagaaaacatgtcttcagcatgtttacaaaattatgaag 56  Q
    |||||||| |||||||| |||||||||||||  |||||||||||||||||||||||    
T  27514416 tcagcattatcataatgcagaaaacatgtctaaagcatgtttacaaaattatgaag 27514471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 27557006 - 27556962
Alignment:
Q  10 tcataatgaagaaaacatgtcttcagcatgtttacaaaattatga 54  Q
    ||||||||||||||||||||||  |||||||||||||||||||||    
T  27557006 tcataatgaagaaaacatgtctaaagcatgtttacaaaattatga 27556962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 27503452 - 27503499
Alignment:
Q  5 cattgtcataatgaagaaaacatgtcttcagcatgtttacaaaattat 52  Q
    |||| ||||||||||||||||||||||  |||||||||||||||||||    
T  27503452 cattatcataatgaagaaaacatgtctgaagcatgtttacaaaattat 27503499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 27489638 - 27489684
Alignment:
Q  5 cattgtcataatgaagaaaacatgtcttcagcatgtttacaaaatta 51  Q
    |||| ||||||||||||||||||||||  ||||||||||||||||||    
T  27489638 cattttcataatgaagaaaacatgtctaaagcatgtttacaaaatta 27489684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 75 - 167
Target Start/End: Original strand, 27517383 - 27517475
Alignment:
Q  75 aagtggaagctttgtattggacattgtgtaagaaggtagggtacactc-taagacaacaccacatgctaccttatcactatgctctctatcctt 167  Q
    ||||||||||||||| |||| |||||| | ||||||| ||||||| || ||||||||| ||||||||||  |||||  ||||||||||| ||||    
T  27517383 aagtggaagctttgtgttggccattgtttgagaaggtggggtacaatcttaagacaacgccacatgctatattatc-ttatgctctctaacctt 27517475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 27476181 - 27476133
Alignment:
Q  4 gcattgtcataatgaagaaaacatgtcttcagcatgtttacaaaattat 52  Q
    ||||| ||||||||||||||||||||||  |||||| ||||||||||||    
T  27476181 gcattatcataatgaagaaaacatgtctgaagcatgcttacaaaattat 27476133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 27506280 - 27506324
Alignment:
Q  12 ataatgaagaaaacatgtcttcagcatgtttacaaaattatgaag 56  Q
    ||||||||||||||||||||  | |||||||||||||||||||||    
T  27506280 ataatgaagaaaacatgtctgaaacatgtttacaaaattatgaag 27506324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 27479444 - 27479400
Alignment:
Q  12 ataatgaagaaaacatgtcttcagcatgtttacaaaattatgaag 56  Q
    ||||||||||||||||||||  | |||||||||| ||||||||||    
T  27479444 ataatgaagaaaacatgtctgaaacatgtttacacaattatgaag 27479400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 27486504 - 27486460
Alignment:
Q  12 ataatgaagaaaacatgtcttcagcatgtttacaaaattatgaag 56  Q
    ||||||||||||||||||||  | |||||||||| ||||||||||    
T  27486504 ataatgaagaaaacatgtctgaaacatgtttacacaattatgaag 27486460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University