View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7444_low_1 (Length: 730)

Name: NF7444_low_1
Description: NF7444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7444_low_1
NF7444_low_1
[»] chr3 (21 HSPs)
chr3 (12-214)||(24107283-24107485)
chr3 (12-214)||(27864931-27865132)
chr3 (12-214)||(19860493-19860694)
chr3 (12-214)||(3171491-3171693)
chr3 (4-214)||(38758610-38758821)
chr3 (12-215)||(54446021-54446219)
chr3 (12-193)||(18025983-18026163)
chr3 (140-214)||(24107153-24107228)
chr3 (140-214)||(27864801-27864876)
chr3 (141-214)||(31596747-31596821)
chr3 (140-214)||(38758866-38758941)
chr3 (140-205)||(21792228-21792294)
chr3 (105-214)||(46684100-46684209)
chr3 (147-214)||(16907932-16908000)
chr3 (140-196)||(21792376-21792432)
chr3 (140-213)||(54446274-54446349)
chr3 (141-194)||(14812450-14812503)
chr3 (20-99)||(14812567-14812646)
chr3 (156-214)||(18025882-18025941)
chr3 (64-214)||(46685450-46685599)
chr3 (170-214)||(11422381-11422426)
[»] chr5 (17 HSPs)
chr5 (12-213)||(5840880-5841081)
chr5 (12-214)||(23322100-23322302)
chr5 (14-213)||(25088924-25089123)
chr5 (14-213)||(25146893-25147092)
chr5 (12-214)||(15933358-15933560)
chr5 (140-214)||(23322357-23322432)
chr5 (133-214)||(34634070-34634152)
chr5 (140-214)||(5841136-5841211)
chr5 (146-214)||(9379932-9380001)
chr5 (131-214)||(43183232-43183316)
chr5 (140-214)||(42792950-42793025)
chr5 (140-193)||(25088428-25088481)
chr5 (140-193)||(25146397-25146450)
chr5 (12-133)||(42793632-42793752)
chr5 (610-674)||(19057325-19057389)
chr5 (156-214)||(15933602-15933661)
chr5 (146-196)||(9380718-9380768)
[»] chr6 (7 HSPs)
chr6 (12-214)||(3658954-3659156)
chr6 (12-178)||(5367454-5367619)
chr6 (12-196)||(28944266-28944449)
chr6 (140-214)||(5367674-5367748)
chr6 (51-214)||(8286790-8286952)
chr6 (140-214)||(3659211-3659285)
chr6 (105-214)||(8287390-8287499)
[»] chr8 (8 HSPs)
chr8 (12-215)||(30905858-30906061)
chr8 (12-214)||(18202775-18202977)
chr8 (141-214)||(18203316-18203390)
chr8 (140-214)||(30905398-30905473)
chr8 (145-214)||(32539449-32539519)
chr8 (146-214)||(10536002-10536071)
chr8 (146-214)||(10536792-10536861)
chr8 (100-197)||(29275265-29275362)
[»] chr7 (7 HSPs)
chr7 (12-215)||(8905771-8905974)
chr7 (12-214)||(4264978-4265180)
chr7 (136-214)||(8905642-8905721)
chr7 (133-214)||(4265228-4265310)
chr7 (146-214)||(8329046-8329114)
chr7 (147-214)||(25749396-25749464)
chr7 (140-214)||(25749314-25749388)
[»] chr2 (10 HSPs)
chr2 (7-214)||(42962895-42963102)
chr2 (7-214)||(18171203-18171414)
chr2 (12-212)||(38694892-38695092)
chr2 (140-214)||(38695147-38695222)
chr2 (146-214)||(14159208-14159277)
chr2 (146-214)||(14160421-14160490)
chr2 (140-214)||(18166635-18166710)
chr2 (140-214)||(4410634-4410709)
chr2 (146-214)||(4733306-4733375)
chr2 (146-214)||(4734217-4734286)
[»] chr4 (32 HSPs)
chr4 (12-214)||(10468482-10468684)
chr4 (12-214)||(12585160-12585362)
chr4 (12-212)||(52677684-52677884)
chr4 (15-214)||(10286412-10286611)
chr4 (12-194)||(16067456-16067637)
chr4 (12-212)||(49028267-49028467)
chr4 (12-213)||(21038246-21038445)
chr4 (44-215)||(36098746-36098917)
chr4 (12-214)||(622189-622391)
chr4 (12-155)||(3990738-3990879)
chr4 (13-162)||(9268156-9268304)
chr4 (140-212)||(21038119-21038191)
chr4 (138-214)||(45667233-45667310)
chr4 (133-214)||(52677554-52677636)
chr4 (140-214)||(3990934-3991009)
chr4 (140-214)||(9268025-9268100)
chr4 (140-214)||(10468739-10468814)
chr4 (140-195)||(16067346-16067401)
chr4 (146-214)||(9450923-9450992)
chr4 (141-213)||(25225793-25225866)
chr4 (140-215)||(12585417-12585493)
chr4 (136-214)||(9449717-9449796)
chr4 (140-214)||(49028522-49028597)
chr4 (138-213)||(10202681-10202757)
chr4 (144-214)||(17931290-17931361)
chr4 (146-214)||(4437682-4437751)
chr4 (146-214)||(4439038-4439107)
chr4 (146-214)||(21325695-21325764)
chr4 (146-214)||(28450752-28450821)
chr4 (144-214)||(17932138-17932209)
chr4 (140-198)||(622077-622134)
chr4 (146-214)||(28451541-28451610)
[»] scaffold0069 (2 HSPs)
scaffold0069 (13-214)||(20028-20232)
scaffold0069 (140-216)||(19895-19972)
[»] scaffold0006 (2 HSPs)
scaffold0006 (12-194)||(93763-93944)
scaffold0006 (141-214)||(93634-93707)
[»] scaffold0008 (2 HSPs)
scaffold0008 (12-205)||(266632-266824)
scaffold0008 (140-213)||(266879-266953)
[»] chr1 (10 HSPs)
chr1 (12-215)||(37499177-37499376)
chr1 (138-214)||(30335229-30335305)
chr1 (146-214)||(9114821-9114890)
chr1 (146-214)||(14903808-14903877)
chr1 (146-214)||(14904596-14904665)
chr1 (146-214)||(17690936-17691005)
chr1 (78-134)||(30335126-30335181)
chr1 (145-215)||(17689737-17689807)
chr1 (148-194)||(9116064-9116110)
chr1 (141-195)||(37499432-37499486)


Alignment Details
Target: chr3 (Bit Score: 124; Significance: 2e-63; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 12 - 214
Target Start/End: Original strand, 24107283 - 24107485
Alignment:
Q  12 caaaacgttaaataggcacatgtgatctgcgacgtgacaacttgcgatgtgtatccacgttagacgttggcttaacggttttaacggttgggaatttatt 111  Q
    ||||||||||||||||||||||||| | |||| |||||||||||| |||||||||| | |||||| |||||||||||||||| ||||| |||||||||||    
T  24107283 caaaacgttaaataggcacatgtgaacggcgaagtgacaacttgcaatgtgtatcctccttagacattggcttaacggttttgacggt-gggaatttatt 24107381  T
Q  112 tggttgatggaagatgacttaaatggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaat 210  Q
    ||||| | ||||||||||||||  ||| |||||||||||||||||||||||||| |||||||||||| |||||| |||||||| ||||||||||||||||    
T  24107382 tggttaacggaagatgacttaacgggaccaaattgtaacgttaataacttatgggactaaaatgtaaccaacaattaacttaatggaccacatcattaat 24107481  T
Q  211 taag 214  Q
    ||||    
T  24107482 taag 24107485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 12 - 214
Target Start/End: Original strand, 27864931 - 27865132
Alignment:
Q  12 caaaacgttaaataggcacatgtgatctgcgacgtgacaacttgcgatgtgtatccacgttagacgttggcttaacggttttaacggttgggaatttatt 111  Q
    ||||||||||| ||||||||||||| | | ||||||||||||||| |||||||||||| |||| | |||| ||||||||||| |||| |||| |||||||    
T  27864931 caaaacgttaactaggcacatgtgaacggtgacgtgacaacttgcaatgtgtatccaccttagtcattgggttaacggttttgacgg-tggggatttatt 27865029  T
Q  112 tggttgatggaagatgacttaaatggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaat 210  Q
    ||||||| ||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||    
T  27865030 tggttgacggaagatgacttaaa-ggaccaaattgtaacgttaataacttatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaat 27865128  T
Q  211 taag 214  Q
    ||||    
T  27865129 taag 27865132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 12 - 214
Target Start/End: Complemental strand, 19860694 - 19860493
Alignment:
Q  12 caaaacgttaaataggcacatgtgatctgcgacgtgacaacttgcgatgtgtatccacgttagacgttggcttaacggttttaacggttgggaatttatt 111  Q
    ||||||||||||||||||||||||| | | |||||||||||||||||||||||||||  |||||| |||||||||||||||| ||||| | ||| |||||    
T  19860694 caaaacgttaaataggcacatgtgaacggtgacgtgacaacttgcgatgtgtatccaatttagacattggcttaacggttttgacggtggagaa-ttatt 19860596  T
Q  112 tggttgatggaagatgacttaaatggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaat 210  Q
    ||||||| ||||||| ||||||| ||| |||||||||||||||||||||||||| |||||||||||| ||| |||||||||||  |||||||||||||||    
T  19860595 tggttgacggaagatcacttaaa-ggaccaaattgtaacgttaataacttatgggactaaaatgtaaccaataaataacttaatagaccacatcattaat 19860497  T
Q  211 taag 214  Q
    ||||    
T  19860496 taag 19860493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 12 - 214
Target Start/End: Complemental strand, 3171693 - 3171491
Alignment:
Q  12 caaaacgttaaataggcacatgtgatctgcgacgtgacaacttgcgatgtgtatccacgttagacgttggcttaacggttttaacggttgggaatttatt 111  Q
    |||||||||||||| |||||||||| |   |||||||||||||||  ||||||||||| |||||| |||| ||||||||||| ||||| |||| | ||||    
T  3171693 caaaacgttaaataagcacatgtgaacaatgacgtgacaacttgcagtgtgtatccaccttagacattggattaacggttttgacggtgggga-tgtatt 3171595  T
Q  112 tggttgatggaagatgacttaaatggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaat 210  Q
    ||||||| ||||||| ||||||| ||| ||||||||||| |||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||    
T  3171594 tggttgacggaagataacttaaagggaccaaattgtaacattaataacttatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaat 3171495  T
Q  211 taag 214  Q
    ||||    
T  3171494 taag 3171491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 4 - 214
Target Start/End: Complemental strand, 38758821 - 38758610
Alignment:
Q  4 gccttttgc-aaaacgttaaataggcacatgtgatctgcgacgtgacaacttgcgatgtgtatccacgttagacgttggcttaacggttttaacggttgg 102  Q
    ||||||||| ||||||||||||||| |||||||| | |||| |||||||||||| |||||||||||| |||||| |||| ||||||||||| || || ||    
T  38758821 gccttttgccaaaacgttaaataggaacatgtgaacggcgatgtgacaacttgcaatgtgtatccaccttagacattgggttaacggttttgacagt-gg 38758723  T
Q  103 gaatttatttggttgatggaagatgacttaaatggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccac 201  Q
     |||||||||||| || ||||||| ||||||| |||  ||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||| ||    
T  38758722 aaatttatttggtagagggaagataacttaaagggactaaattgtaacgttaataacttatgggactaaaatgtaaccaacaaataacttaagggacaac 38758623  T
Q  202 atcattaattaag 214  Q
    |||| ||||||||    
T  38758622 atcactaattaag 38758610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 12 - 215
Target Start/End: Complemental strand, 54446219 - 54446021
Alignment:
Q  12 caaaacgttaaataggcacatgtgatctgcgacgtgacaacttgcgatgtgtatccacgttagacgttggcttaacggttttaacggttgggaatttatt 111  Q
    |||||||||||||| |||  ||||| | | |||||||||||     |||||||||||| |||||| |||||||||||||||| ||||| | |||||||||    
T  54446219 caaaacgttaaatatgcatgtgtgaacggtgacgtgacaac-----atgtgtatccaccttagacattggcttaacggttttgacggt-gagaatttatt 54446126  T
Q  112 tggttgatggaagatgacttaaatggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaag-gaccacatcattaat 210  Q
    || |||| ||||||||||||||| ||| |||||||||||||||||||||||| | | |||||||||||||||||||||||| || |||||||||||||||    
T  54446125 tgtttgacggaagatgacttaaagggaccaaattgtaacgttaataacttataggattaaaatgtaatcaacaaataactttagagaccacatcattaat 54446026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 12 - 193
Target Start/End: Original strand, 18025983 - 18026163
Alignment:
Q  12 caaaacgttaaataggcacatgtgatctgcgacgtgacaacttgcgatgtgtatccacgttagacgttggcttaacggttttaacggttgggaatttatt 111  Q
    |||||||||||||| | |||||||| | | ||||||||| ||||| |||||||||||| |||||| |||| ||||||||||| ||||| | || ||||||    
T  18025983 caaaacgttaaataagaacatgtgaacggtgacgtgacagcttgcaatgtgtatccaccttagacattggattaacggttttgacggtggaga-tttatt 18026081  T
Q  112 tggttgatggaagatgacttaaatggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataactta 193  Q
    || ||||  ||||||| |||||| |||  |||| |||||||||||||||||||| |||||||||||| ||||||||||||||    
T  18026082 tgattgacagaagatggcttaaagggactaaatggtaacgttaataacttatgggactaaaatgtaaccaacaaataactta 18026163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 140 - 214
Target Start/End: Complemental strand, 24107228 - 24107153
Alignment:
Q  140 caaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 214  Q
    |||||||||||||||||||||||||| || ||||||||| |||||||||||| || |||||| |||||||||||||    
T  24107228 caaattgtaacgttaataacttatgggaccaaaatgtaaccaacaaataactcaagggaccaaatcattaattaag 24107153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 140 - 214
Target Start/End: Complemental strand, 27864876 - 27864801
Alignment:
Q  140 caaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataactta-aggaccacatcattaattaag 214  Q
    |||||||||||||||||||||||||| || ||||||||| ||||||||||||||  |||||| |||||||||||||    
T  27864876 caaattgtaacgttaataacttatgggaccaaaatgtaaccaacaaataacttacgggaccaaatcattaattaag 27864801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 141 - 214
Target Start/End: Original strand, 31596747 - 31596821
Alignment:
Q  141 aaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 214  Q
    |||| |||||||||||||||||||| || ||||||||| ||||||||||||||| |||||| |||||||||||||    
T  31596747 aaatggtaacgttaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaag 31596821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 140 - 214
Target Start/End: Original strand, 38758866 - 38758941
Alignment:
Q  140 caaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 214  Q
    |||||| ||||||| ||||||||||| || ||||||||| ||||||||||||||| |||||| |||||||||||||    
T  38758866 caaattataacgttgataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaag 38758941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 140 - 205
Target Start/End: Complemental strand, 21792294 - 21792228
Alignment:
Q  140 caaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatca 205  Q
    |||||||||||||||||||||||||| |||||||||||| |||| ||||| |||| |||||||||||    
T  21792294 caaattgtaacgttaataacttatgggactaaaatgtaaccaaccaataaattaagggaccacatca 21792228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 105 - 214
Target Start/End: Complemental strand, 46684209 - 46684100
Alignment:
Q  105 atttatttggttgatggaagatgacttaaatggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaag-gaccacat 203  Q
    |||||||||| ||| ||||||| ||||||  ||| ||||  |||| ||||||||||||||| |  ||||||||| |||||||||||||||| ||||| ||    
T  46684209 atttatttggctgacggaagataacttaag-ggaccaaaacgtaatgttaataacttatgggatcaaaatgtaaccaacaaataacttaagcgaccaaat 46684111  T
Q  204 cattaattaag 214  Q
    |||||||||||    
T  46684110 cattaattaag 46684100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 147 - 214
Target Start/End: Complemental strand, 16908000 - 16907932
Alignment:
Q  147 taacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 214  Q
    ||||||||||||||||||| || |||| |||| ||||||||||||||| |||||| |||||||||||||    
T  16908000 taacgttaataacttatgggaccaaaacgtaaccaacaaataacttaagggaccaaatcattaattaag 16907932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 196
Target Start/End: Original strand, 21792376 - 21792432
Alignment:
Q  140 caaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaagg 196  Q
    |||||||||||||||||||||||  | || ||||||||| |||||||||||||||||    
T  21792376 caaattgtaacgttaataacttagaggaccaaaatgtaaacaacaaataacttaagg 21792432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 140 - 213
Target Start/End: Original strand, 54446274 - 54446349
Alignment:
Q  140 caaattgtaacgttaataacttat-ggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaa 213  Q
    |||||||||| ||||||||||||| ||| | |||||||||  |||||||||||||| |||||| ||||||||||||    
T  54446274 caaattgtaatgttaataacttataggaccaaaaatgtaactaacaaataacttaagggaccaaatcattaattaa 54446349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 194
Target Start/End: Complemental strand, 14812503 - 14812450
Alignment:
Q  141 aaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa 194  Q
    ||||||||||||||||||||||||| || |||||||||  || |||||||||||    
T  14812503 aaattgtaacgttaataacttatgggaccaaaatgtaactaaaaaataacttaa 14812450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 99
Target Start/End: Original strand, 14812567 - 14812646
Alignment:
Q  20 taaataggcacatgtgatctgcgacgtgacaacttgcgatgtgtatccacgttagacgttggcttaacggttttaacggt 99  Q
    |||| |||||| ||||| | | ||||||||||||| | ||||||||| || |||||| ||||| |||||||||| |||||    
T  14812567 taaaaaggcacgtgtgaacggtgacgtgacaacttacaatgtgtatctaccttagacattggcctaacggttttgacggt 14812646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 214
Target Start/End: Complemental strand, 18025941 - 18025882
Alignment:
Q  156 taacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 214  Q
    |||||||||| || ||||||||| ||||||||||||||| |||||| | |||||||||||    
T  18025941 taacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaagcattaattaag 18025882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 214
Target Start/End: Original strand, 46685450 - 46685599
Alignment:
Q  64 atccacgttagacgttggcttaacggttttaacggttgggaatttatttggttgatggaagatgacttaaatggatcaaattgtaacgttaataacttat 163  Q
    |||||| |||||| |||  ||||||||||  |||||  ||| ||||||||||||| ||||||| ||||||  |||  | |  |||| | |||||||||||    
T  46685450 atccaccttagacattgtgttaacggtttcgacggtgtgga-tttatttggttgacggaagataacttaag-ggactataacgtaatgataataacttat 46685547  T
Q  164 ggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 214  Q
    || || ||||||||| ||| |||||| |||| |||||| |||||||||||||    
T  46685548 gggaccaaaatgtaaccaataaataatttaagggaccaaatcattaattaag 46685599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 214
Target Start/End: Complemental strand, 11422426 - 11422381
Alignment:
Q  170 aaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 214  Q
    ||||||||| ||||||||||||||| |||||| |||||||||||||    
T  11422426 aaaatgtaaccaacaaataacttaagggaccaaatcattaattaag 11422381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 123; Significance: 8e-63; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 12 - 213
Target Start/End: Complemental strand, 5841081 - 5840880
Alignment:
Q  12 caaaacgttaaataggcacatgtgatctgcgacgtgacaacttgcgatgtgtatccacgttagacgttggcttaacggttttaacggttgggaatttatt 111  Q
    |||||||||||||||| |||||||| | | ||||||||||||||| |||  ||||||| |||||| |||||||||||||||| ||||| |||| ||||||    
T  5841081 caaaacgttaaataggaacatgtgaacggtgacgtgacaacttgcaatgcatatccaccttagacattggcttaacggttttgacggtgggga-tttatt 5840983  T
Q  112 tggttgatggaagatgacttaaatggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaat 210  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||| ||||||||||||||||    
T  5840982 tggttgacggaagatgacttaaagggatcaaattgtaacgttaataacttatggcactaaaatataaccaacaaataacttaagggaccacatcattaat 5840883  T
Q  211 taa 213  Q
    |||    
T  5840882 taa 5840880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 12 - 214
Target Start/End: Complemental strand, 23322302 - 23322100
Alignment:
Q  12 caaaacgttaaataggcacatgtgatctgcgacgtgacaacttgcgatgtgtatccacgttagacgttggcttaacggttttaacggttgggaatttatt 111  Q
    ||||||||||||||||||||||||| | | ||||||||||||||| |  ||||||||| |||||| |||||||||||||||| ||||| | || ||||||    
T  23322302 caaaacgttaaataggcacatgtgaacggtgacgtgacaacttgcaacatgtatccaccttagacattggcttaacggttttgacggtggaga-tttatt 23322204  T
Q  112 tggttgatggaagatgacttaaatggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaat 210  Q
    || |||| ||||||||||||||| ||| ||||||||||| |||||||||||||| |||||||||||| |||||||||||||||  ||| |||||||||||    
T  23322203 tgcttgacggaagatgacttaaagggaccaaattgtaacattaataacttatgggactaaaatgtaaccaacaaataacttaatagactacatcattaat 23322104  T
Q  211 taag 214  Q
    ||||    
T  23322103 taag 23322100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 14 - 213
Target Start/End: Original strand, 25088924 - 25089123
Alignment:
Q  14 aaacgttaaataggcacatgtgatctgcgacgtgacaacttgcgatgtgtatccacgttagacgttggcttaacggttttaacggttgggaatttatttg 113  Q
    |||| ||||||| |||||||||| | | ||||||||||||||| | |||||| ||| |||||| |||||||||| ||||| ||||| || ||||||||||    
T  25088924 aaacattaaatacgcacatgtgaacggtgacgtgacaacttgcaacgtgtattcaccttagacattggcttaaccgttttgacggt-ggaaatttatttg 25089022  T
Q  114 gttgatggaagatgacttaaatggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaagg-accacatcattaatta 212  Q
    |||||| |||||||||||||| ||||||||||||| | |||||||||||||  |||||||| ||| ||| ||||||||||||| ||||| ||||||||||    
T  25089023 gttgatagaagatgacttaaagggatcaaattgtagcattaataacttatgacactaaaatataaccaataaataacttaaggaaccacgtcattaatta 25089122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 14 - 213
Target Start/End: Original strand, 25146893 - 25147092
Alignment:
Q  14 aaacgttaaataggcacatgtgatctgcgacgtgacaacttgcgatgtgtatccacgttagacgttggcttaacggttttaacggttgggaatttatttg 113  Q
    |||| ||||||| |||||||||| | | ||||||||||||||| | |||||| ||| |||||| |||||||||| ||||| ||||| || ||||||||||    
T  25146893 aaacattaaatacgcacatgtgaacggtgacgtgacaacttgcaacgtgtattcaccttagacattggcttaaccgttttgacggt-ggaaatttatttg 25146991  T
Q  114 gttgatggaagatgacttaaatggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaagg-accacatcattaatta 212  Q
    |||||| |||||||||||||| ||||||||||||| | |||||||||||||  |||||||| ||| ||| ||||||||||||| ||||| ||||||||||    
T  25146992 gttgatagaagatgacttaaagggatcaaattgtagcattaataacttatgacactaaaatataaccaataaataacttaaggaaccacgtcattaatta 25147091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 12 - 214
Target Start/End: Complemental strand, 15933560 - 15933358
Alignment:
Q  12 caaaacgttaaataggcacatgtgatctgcgacgtgacaacttgcgatgtgtatccacgttagacgttggcttaacggttttaacggttgggaatttatt 111  Q
    |||||||||||||| || ||||||| | | ||||||||||||||| |||| ||||||| ||| || |||| ||||||||||| ||||| |||| ||||||    
T  15933560 caaaacgttaaatatgcgcatgtgaacggtgacgtgacaacttgcaatgtttatccaccttaaacattgggttaacggttttgacggtgggga-tttatt 15933462  T
Q  112 tggttgatggaagatgacttaaatggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaat 210  Q
    ||||||| |||||||  |||||| |||  ||||||||||||||||||||||||  |||||||| ||| ||||||||||  ||| ||||||||||||| ||    
T  15933461 tggttgacggaagatagcttaaagggactaaattgtaacgttaataacttatgagactaaaatataaccaacaaataatataagggaccacatcattgat 15933362  T
Q  211 taag 214  Q
    ||||    
T  15933361 taag 15933358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 140 - 214
Target Start/End: Original strand, 23322357 - 23322432
Alignment:
Q  140 caaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 214  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||| |||||||||||||    
T  23322357 caaattgtaacgttaataacttatggaaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaag 23322432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 133 - 214
Target Start/End: Complemental strand, 34634152 - 34634070
Alignment:
Q  133 aatggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataactt-aaggaccacatcattaattaag 214  Q
    |||||| |||| ||||||||||||||||||||| || ||| ||||| ||||||||||||| ||||||||||||||||||||||    
T  34634152 aatggaccaaaatgtaacgttaataacttatgggaccaaattgtaaccaacaaataacttaaaggaccacatcattaattaag 34634070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 140 - 214
Target Start/End: Original strand, 5841136 - 5841211
Alignment:
Q  140 caaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaag-gaccacatcattaattaag 214  Q
    ||||||||||||||||||| |||||| || ||||||||| |||||||||| ||||| ||||| |||||||||||||    
T  5841136 caaattgtaacgttaataatttatgggaccaaaatgtaaccaacaaataagttaagagaccaaatcattaattaag 5841211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 9380001 - 9379932
Alignment:
Q  146 gtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 214  Q
    |||||||||||||||| |||||| ||||||||| ||||||||||||||| ||||||  ||||||||||||    
T  9380001 gtaacgttaataacttgtggaaccaaaatgtaaccaacaaataacttaagggaccaattcattaattaag 9379932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 131 - 214
Target Start/End: Complemental strand, 43183316 - 43183232
Alignment:
Q  131 taaatggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 214  Q
    |||| ||| |||||||||| |||||||| |||||| || ||||||||| ||||||||||||||| |||||| || ||||||||||    
T  43183316 taaagggaccaaattgtaatgttaataatttatgggaccaaaatgtaaccaacaaataacttaagggaccaaattattaattaag 43183232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 140 - 214
Target Start/End: Complemental strand, 42793025 - 42792950
Alignment:
Q  140 caaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaag-gaccacatcattaattaag 214  Q
    ||||||||||| ||||||| |||||| || |||||| || |||||||||||||||| ||||| |||||||||||||    
T  42793025 caaattgtaacattaataatttatgggaccaaaatgaaaccaacaaataacttaagcgaccaaatcattaattaag 42792950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 193
Target Start/End: Complemental strand, 25088481 - 25088428
Alignment:
Q  140 caaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataactta 193  Q
    ||||||||||||||||||| |||||  || ||||||||| ||||||||||||||    
T  25088481 caaattgtaacgttaataatttatgcgaccaaaatgtaaccaacaaataactta 25088428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 193
Target Start/End: Complemental strand, 25146450 - 25146397
Alignment:
Q  140 caaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataactta 193  Q
    ||||||||||||||||||| |||||  || ||||||||| ||||||||||||||    
T  25146450 caaattgtaacgttaataatttatgcgaccaaaatgtaaccaacaaataactta 25146397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 133
Target Start/End: Original strand, 42793632 - 42793752
Alignment:
Q  12 caaaacgttaaataggcacatgtgatctgcgacgtgacaacttgcgatgtgtatccacgttagacgttggcttaacggttttaacggttgggaatttatt 111  Q
    ||||| ||||||| || |||||||| | | || |||||||||||| |||||||||||  |||||| |||| |||||| |||| || | ||  ||||||||    
T  42793632 caaaatgttaaattggaacatgtgaacggtgatgtgacaacttgcaatgtgtatccatcttagacattggattaacgattttgactg-tgaaaatttatt 42793730  T
Q  112 tggttgatggaagatgacttaa 133  Q
    |||||||  |||||| ||||||    
T  42793731 tggttgacagaagataacttaa 42793752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 610 - 674
Target Start/End: Original strand, 19057325 - 19057389
Alignment:
Q  610 gcaattatatgaaggtcggagatggaagtgcatttacatgaatctatatttatatgatttcttgg 674  Q
    |||||||| ||||| | ||||||||||| |  ||| |||||||||||| ||||||||||||||||    
T  19057325 gcaattatctgaagattggagatggaagcgtttttgcatgaatctatacttatatgatttcttgg 19057389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 214
Target Start/End: Original strand, 15933602 - 15933661
Alignment:
Q  156 taacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 214  Q
    ||||||| || |||||||||||| ||||||||||||||| |||||| ||||| |||||||    
T  15933602 taacttaagggactaaaatgtaaccaacaaataacttaagggaccaaatcatgaattaag 15933661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 146 - 196
Target Start/End: Original strand, 9380718 - 9380768
Alignment:
Q  146 gtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaagg 196  Q
    ||||| |||||||||||||| |  ||||||||| |||||||||||||||||    
T  9380718 gtaacattaataacttatgggatcaaaatgtaaccaacaaataacttaagg 9380768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 116; Significance: 1e-58; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 12 - 214
Target Start/End: Complemental strand, 3659156 - 3658954
Alignment:
Q  12 caaaacgttaaataggcacatgtgatctgcgacgtgacaacttgcgatgtgtatccacgttagacgttggcttaacggttttaacggttgggaatttatt 111  Q
    ||||||||||||||||||||||||| | | ||||||||||||||| |||||||||||| |||||| |||| ||||||||||||||||| | || |||||     
T  3659156 caaaacgttaaataggcacatgtgaacggtgacgtgacaacttgcaatgtgtatccaccttagacattgggttaacggttttaacggtggaga-tttatc 3659058  T
Q  112 tggttgatggaagatgacttaaatggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaat 210  Q
    ||||||| ||||||||||||||| ||||||||||||||| |||||||||||||| |||||| ||||| ||| ||||||||||| ||||||||||| ||||    
T  3659057 tggttgacggaagatgacttaaagggatcaaattgtaactttaataacttatgggactaaactgtaaccaataaataacttaagggaccacatcagtaat 3658958  T
Q  211 taag 214  Q
    ||||    
T  3658957 taag 3658954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 12 - 178
Target Start/End: Complemental strand, 5367619 - 5367454
Alignment:
Q  12 caaaacgttaaataggcacatgtgatctgcgacgtgacaacttgcgatgtgtatccacgttagacgttggcttaacggttttaacggttgggaatttatt 111  Q
    ||||||||||||||||||||||||| | | ||||||||||||||| |||||||||||| |||||| |||| ||||||||||| |||| |||  |||||||    
T  5367619 caaaacgttaaataggcacatgtgaacggtgacgtgacaacttgcaatgtgtatccaccttagacattgggttaacggttttgacgg-tggagatttatt 5367521  T
Q  112 tggttgatggaagatgacttaaatggatcaaattgtaacgttaataacttatggaactaaaatgtaa 178  Q
    |||||||  ||||||||||||||  || |||||||||| ||||||||||||||  ||||||||||||    
T  5367520 tggttgacagaagatgacttaaagagaccaaattgtaatgttaataacttatgagactaaaatgtaa 5367454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 12 - 196
Target Start/End: Complemental strand, 28944449 - 28944266
Alignment:
Q  12 caaaacgttaaataggcacatgtgatctgcgacgtgacaacttgcgatgtgtatccacgttagacgttggcttaacggttttaacggttgggaatttatt 111  Q
    ||||||||||||||| ||||||||| | | ||||| ||||||||| |||||||| ||| |||||| || | ||||||||||| |||| |||  |||||||    
T  28944449 caaaacgttaaatagacacatgtgaacagtgacgttacaacttgcaatgtgtattcaccttagacattagattaacggttttgacgg-tggagatttatt 28944351  T
Q  112 tggttgatggaagatgacttaaatggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaagg 196  Q
    ||||||| | ||||| ||| ||| | | ||||||||||| ||||||||||| |  | |||||||||| |||||||| ||||||||    
T  28944350 tggttgacgaaagataactgaaaagaaccaaattgtaacattaataacttacgagattaaaatgtaaccaacaaatgacttaagg 28944266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 140 - 214
Target Start/End: Original strand, 5367674 - 5367748
Alignment:
Q  140 caaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaaggaccacatcattaattaag 214  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||    
T  5367674 caaattgtaacgttaataacttatggaaccaaaatgtaaccaacaaataacttaaggaccaaatcattaattaag 5367748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 51 - 214
Target Start/End: Complemental strand, 8286952 - 8286790
Alignment:
Q  51 acttgcgatgtgtatccacgttagacgttggcttaacggttttaacggttgggaatttatttggttgatggaagatgacttaaatggatc-aaattgtaa 149  Q
    |||||| |||||||||||| |||||| ||   ||||||||| ||||||| |||| |||||||||||||  |||||| ||||||  ||| | ||| |||||    
T  8286952 acttgcaatgtgtatccaccttagacattttgttaacggttctaacggtgggga-tttatttggttgacagaagataacttaa--ggaactaaaatgtaa 8286856  T
Q  150 cgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 214  Q
    ||||||| ||||| || || ||||||||| ||||||||||||||| |||| | |||||||||||||    
T  8286855 cgttaattacttaagggaccaaaatgtaaccaacaaataacttaagggactaaatcattaattaag 8286790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 140 - 214
Target Start/End: Original strand, 3659211 - 3659285
Alignment:
Q  140 caaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 214  Q
    |||||||||| ||||||||||||||| || |||||||||  |||||||||||||| |||||| |||||||||||||    
T  3659211 caaattgtaa-gttaataacttatgggaccaaaatgtaactaacaaataacttaagggaccaaatcattaattaag 3659285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 214
Target Start/End: Original strand, 8287390 - 8287499
Alignment:
Q  105 atttatttggttgatggaagatgacttaaatggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacat 203  Q
    |||||||||||||| ||||||| ||||||  ||| |||| ||||||||| |  | |||  | |||||||||||| ||||||||||||||| |||||| ||    
T  8287390 atttatttggttgacggaagataacttaag-ggaccaaaatgtaacgttgaatagttaaaggactaaaatgtaaccaacaaataacttaagggaccaaat 8287488  T
Q  204 cattaattaag 214  Q
    |||||||||||    
T  8287489 cattaattaag 8287499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 113; Significance: 8e-57; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 12 - 215
Target Start/End: Original strand, 30905858 - 30906061
Alignment:
Q  12 caaaacgttaaataggcacatgtgatctgcgacgtgacaacttgcgatgtgtatccacgttagacgttggcttaacggttttaacggttgggaatttatt 111  Q
    |||||| ||||||||||| |||||| | | ||| ||||||||||| ||||||| |||| |||||| |||||||||||||||| |||||   || ||||||    
T  30905858 caaaacattaaataggcatatgtgaacggtgacatgacaacttgcaatgtgtacccaccttagacattggcttaacggttttgacggtgatga-tttatt 30905956  T
Q  112 tggttgatggaagatgacttaaatggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaag-gaccacatcattaat 210  Q
    ||||||| ||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||    
T  30905957 tggttgacggaagatgacttaaagggaccaaattgtaacgttaataacttatgggactaaaatgtaaccaacaaataacttaagagaccacatcattaat 30906056  T
Q  211 taagt 215  Q
    |||||    
T  30906057 taagt 30906061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 12 - 214
Target Start/End: Complemental strand, 18202977 - 18202775
Alignment:
Q  12 caaaacgttaaataggcacatgtgatctgcgacgtgacaacttgcgatgtgtatccacgttagacgttggcttaacggttttaacggttgggaatttatt 111  Q
    ||||||||||||||| ||||||||| | | ||||||||||||||| | |||||||||| |||||| ||| |||||||||||| ||||| | || ||||||    
T  18202977 caaaacgttaaatagacacatgtgaacggtgacgtgacaacttgcaacgtgtatccaccttagacattgacttaacggttttgacggtggaga-tttatt 18202879  T
Q  112 tggttgatggaagatgacttaaatggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaat 210  Q
    || |||||||||||| ||||||| ||||||||||||||| |||||||||||||  || |||||||||||||||||||||||||  ||| |||| ||||||    
T  18202878 tgcttgatggaagattacttaaaaggatcaaattgtaacattaataacttatgagacgaaaatgtaatcaacaaataacttaatagactacattattaat 18202779  T
Q  211 taag 214  Q
    ||||    
T  18202778 taag 18202775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 141 - 214
Target Start/End: Original strand, 18203316 - 18203390
Alignment:
Q  141 aaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 214  Q
    |||||||||||||||||||||||||||| ||||| ||| ||| ||||||||||| |||||| |||||||||||||    
T  18203316 aaattgtaacgttaataacttatggaaccaaaatataaccaataaataacttaagggaccaaatcattaattaag 18203390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 140 - 214
Target Start/End: Complemental strand, 30905473 - 30905398
Alignment:
Q  140 caaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 214  Q
    ||||||||||||||||||| |||| ||| |||||| ||| |||||||||| |||| |||||| |||||||||||||    
T  30905473 caaattgtaacgttaataagttatagaattaaaatataaccaacaaataatttaagggaccaaatcattaattaag 30905398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 214
Target Start/End: Original strand, 32539449 - 32539519
Alignment:
Q  145 tgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 214  Q
    ||||| ||||||||||||||  | |||||||||| ||||||||||||||| |||||| |||||||||||||    
T  32539449 tgtaatgttaataacttatgagattaaaatgtaaccaacaaataacttaagggaccaaatcattaattaag 32539519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 10536071 - 10536002
Alignment:
Q  146 gtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 214  Q
    |||| ||||||| ||||||| || ||||||||| ||||||||||||||| |||| | |||||||||||||    
T  10536071 gtaatgttaatatcttatgggaccaaaatgtaaccaacaaataacttaagggactaaatcattaattaag 10536002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 10536792 - 10536861
Alignment:
Q  146 gtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 214  Q
    ||||| |||||||||||||| |  ||||||||| |||||||||| |||| |||||| |||||||||||||    
T  10536792 gtaacattaataacttatgggatcaaaatgtaaccaacaaataatttaagggaccaaatcattaattaag 10536861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 197
Target Start/End: Complemental strand, 29275362 - 29275265
Alignment:
Q  100 tgggaatttatttggttgatggaagatgacttaaatggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaagga 197  Q
    |||||||||||||  |||| |||| || | ||||| |||  ||||| |||| ||||||| |||||  |||| ||| ||| ||||||||||||||||||    
T  29275362 tgggaatttatttaattgacggaaaataatttaaagggactaaattataaccttaataaattatgagactagaatataaccaacaaataacttaagga 29275265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 109; Significance: 2e-54; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 12 - 215
Target Start/End: Original strand, 8905771 - 8905974
Alignment:
Q  12 caaaacgttaaataggcacatgtgatctgcgacgtgacaacttgcgatgtgtatccacgttagacgttggcttaacggttttaacggttgggaatttatt 111  Q
    ||||||||||||||||||||||||| | | ||||||||||||||| |||||||||||| |||||| ||| |||||||||||| |||| | ||||||||||    
T  8905771 caaaacgttaaataggcacatgtgaacggtgacgtgacaacttgcaatgtgtatccaccttagacattgacttaacggttttgacgg-taggaatttatt 8905869  T
Q  112 tggttgatggaagatgacttaaatggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaat 210  Q
    ||||||| |||||||||||||||  | |||||||||||| ||||||| ||||| || |||||| ||| ||||||||||||||| ||| ||||||||||||    
T  8905870 tggttgacggaagatgacttaaagtggtcaaattgtaaccttaataatttatgaaagtaaaatataaccaacaaataacttaagggatcacatcattaat 8905969  T
Q  211 taagt 215  Q
    |||||    
T  8905970 taagt 8905974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 12 - 214
Target Start/End: Complemental strand, 4265180 - 4264978
Alignment:
Q  12 caaaacgttaaataggcacatgtgatctgcgacgtgacaacttgcgatgtgtatccacgttagacgttggcttaacggttttaacggttgggaatttatt 111  Q
    ||||||||||||||||||||||||| | | ||||||||||||||| |||||||||||| |||||| |||| ||||||||||| |||| |||| |||||||    
T  4265180 caaaacgttaaataggcacatgtgaacggtgacgtgacaacttgcaatgtgtatccactttagacattgggttaacggttttgacgg-tggggatttatt 4265082  T
Q  112 tggttgatggaagatgacttaaatggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataactt-aaggaccacatcattaat 210  Q
    ||||||| |||| ||  ||||||  || |||||||||| ||||||||||||||  |||||||||| | ||| ||||||||| || |||||||||||||||    
T  4265081 tggttgacggaaaatagcttaaagagaccaaattgtaatgttaataacttatgagactaaaatgtcaccaaaaaataacttaaaagaccacatcattaat 4264982  T
Q  211 taag 214  Q
    ||||    
T  4264981 taag 4264978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 136 - 214
Target Start/End: Complemental strand, 8905721 - 8905642
Alignment:
Q  136 ggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaag-gaccacatcattaattaag 214  Q
    ||||||||||||||| |||||||||||||  || ||||||||| |||||||||||||||| ||||| |||||| ||||||    
T  8905721 ggatcaaattgtaacattaataacttatgagaccaaaatgtaaccaacaaataacttaagagaccaaatcattgattaag 8905642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 133 - 214
Target Start/End: Original strand, 4265228 - 4265310
Alignment:
Q  133 aatggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 214  Q
    |||||| |||||||||||||||||||||||||| |  ||||||||| | |||| |||||||| |||||| |||||||||||||    
T  4265228 aatggaccaaattgtaacgttaataacttatgggatcaaaatgtaaccgacaactaacttaagggaccaaatcattaattaag 4265310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 8329046 - 8329114
Alignment:
Q  146 gtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaaggaccacatcattaattaag 214  Q
    |||||||||||||||| ||  || ||||||||| ||||||||||||||| |||||  ||||||||||||    
T  8329046 gtaacgttaataacttttgagaccaaaatgtaaccaacaaataacttaaagaccaattcattaattaag 8329114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 214
Target Start/End: Original strand, 25749396 - 25749464
Alignment:
Q  147 taacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 214  Q
    ||||||||||||||||||  |||||| ||||| ||||||||||||||| ||| ||||| ||||||||||    
T  25749396 taacgttaataacttatgagactaaattgtaaccaacaaataacttaagggaacacataattaattaag 25749464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 140 - 214
Target Start/End: Complemental strand, 25749388 - 25749314
Alignment:
Q  140 caaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 214  Q
    ||||||||||||||||||||||||||||||||||| ||  |||| ||||||| || |||||  |||||||||||||    
T  25749388 caaattgtaacgttaataacttatggaactaaaatatagccaac-aataactaaagggaccgaatcattaattaag 25749314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 109; Significance: 2e-54; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 7 - 214
Target Start/End: Original strand, 42962895 - 42963102
Alignment:
Q  7 ttttgcaaaacgttaaataggcacatgtgatctgcgacgtgacaacttgcgatgtgtatccacgttagacgttggcttaacggttttaacggttgggaat 106  Q
    |||| ||||||||||||||| |||| ||||  || ||||||||||||||| |||||| ||||| |||||| |||| ||||||||||| ||||| ||||||    
T  42962895 ttttccaaaacgttaaatagacacacgtgaattgtgacgtgacaacttgcaatgtgtgtccaccttagacattggtttaacggttttgacggt-gggaat 42962993  T
Q  107 ttatttggttgatggaagatgacttaaatggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatca 205  Q
    |||||| ||||| |||||||||||| || | | |||||||||||||||||||||||||  |||||||||||| ||||||||||||||| |||||||||||    
T  42962994 ttatttagttgacggaagatgacttgaaggcaccaaattgtaacgttaataacttatgagactaaaatgtaaccaacaaataacttaagggaccacatca 42963093  T
Q  206 ttaattaag 214  Q
    |||||||||    
T  42963094 ttaattaag 42963102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 7 - 214
Target Start/End: Original strand, 18171203 - 18171414
Alignment:
Q  7 ttttgcaaaacgttaaataggc----acatgtgatctgcgacgtgacaacttgcgatgtgtatccacgttagacgttggcttaacggttttaacggttgg 102  Q
    |||| |||||||||||||||||    ||| |||| | | ||| ||||||||||| |||||| ||||| |||||| |||| ||||||||||| ||||| ||    
T  18171203 ttttccaaaacgttaaataggctggcacacgtgaacggtgacatgacaacttgcaatgtgtgtccaccttagacattggtttaacggttttgacggt-gg 18171301  T
Q  103 gaatttatttggttgatggaagatgacttaaatggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccac 201  Q
    |||||||||||||||| |||||||||||| || ||| ||||||||||  |||||||||||||| |||||||||||| |||||||||| |||| ||||||     
T  18171302 gaatttatttggttgacggaagatgacttgaaaggaccaaattgtaattttaataacttatgggactaaaatgtaaccaacaaataatttaagggaccat 18171401  T
Q  202 atcattaattaag 214  Q
    |||||||||||||    
T  18171402 atcattaattaag 18171414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 12 - 212
Target Start/End: Complemental strand, 38695092 - 38694892
Alignment:
Q  12 caaaacgttaaataggcacatgtgatctgcgacgtgacaacttgcgatgtgtatccacgttagacgttggcttaacggttttaacggttgggaatttatt 111  Q
    |||||| |||||||||||||||||| | | || |||||||||| | |||||||||||| |||||| |||  ||||||||||| ||||| |||| ||||||    
T  38695092 caaaacattaaataggcacatgtgaacggtgatgtgacaacttacaatgtgtatccactttagacattgagttaacggttttgacggtgggga-tttatt 38694994  T
Q  112 tggttgatggaagatgacttaaatggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaat 210  Q
    ||||||| |||| ||  |||||| ||| ||||| ||||||||||||| |||||| |||||||||||| ||||||||||||||| |||||||||||| |||    
T  38694993 tggttgacggaaaatagcttaaagggaccaaatggtaacgttaataatttatgggactaaaatgtaaccaacaaataacttaagggaccacatcatcaat 38694894  T
Q  211 ta 212  Q
    ||    
T  38694893 ta 38694892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 140 - 214
Target Start/End: Original strand, 38695147 - 38695222
Alignment:
Q  140 caaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 214  Q
    ||||||||||||||||||| |||||| || ||||||||| ||| ||||||||||| |||||| |||||||||||||    
T  38695147 caaattgtaacgttaataatttatgggaccaaaatgtaaccaataaataacttaagggaccaaatcattaattaag 38695222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 14159277 - 14159208
Alignment:
Q  146 gtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 214  Q
    |||||||||||||||||||| || |||| |||| ||||||||||||||| |||||| |||||||||||||    
T  14159277 gtaacgttaataacttatgggaccaaaacgtaaccaacaaataacttaagggaccaaatcattaattaag 14159208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 14160421 - 14160490
Alignment:
Q  146 gtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 214  Q
    |||||||||||||||||||| || |||| |||| ||||||||||||||| |||||| |||||||||||||    
T  14160421 gtaacgttaataacttatgggaccaaaacgtaaccaacaaataacttaatggaccaaatcattaattaag 14160490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 140 - 214
Target Start/End: Complemental strand, 18166710 - 18166635
Alignment:
Q  140 caaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 214  Q
    |||||||||||||||||||||||||  |  ||||||||| |||||||||| |||| |||||| |||||||||||||    
T  18166710 caaattgtaacgttaataacttatgagatcaaaatgtaaccaacaaataatttaagggaccaaatcattaattaag 18166635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 140 - 214
Target Start/End: Original strand, 4410634 - 4410709
Alignment:
Q  140 caaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 214  Q
    |||| |||| ||||||||||||| || || ||| ||||| ||||||||||||||| |||||| |||||||||||||    
T  4410634 caaaatgtagcgttaataacttacgggaccaaattgtaaccaacaaataacttaagggaccaaatcattaattaag 4410709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 4733375 - 4733306
Alignment:
Q  146 gtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 214  Q
    |||| ||||||||||||||| || ||||||||| |||||||||| |||| ||| || |||||||||||||    
T  4733375 gtaatgttaataacttatgggaccaaaatgtaaccaacaaataatttaagggatcaaatcattaattaag 4733306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 4734217 - 4734286
Alignment:
Q  146 gtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 214  Q
    |||||||||||||||||| | |  ||||||||| ||||||||||||||| ||||||  ||||||||||||    
T  4734217 gtaacgttaataacttataggatcaaaatgtaaccaacaaataacttaagggaccaattcattaattaag 4734286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 108; Significance: 7e-54; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 12 - 214
Target Start/End: Complemental strand, 10468684 - 10468482
Alignment:
Q  12 caaaacgttaaataggcacatgtgatctgcgacgtgacaacttgcgatgtgtatccacgttagacgttggcttaacggttttaacggttgggaatttatt 111  Q
    |||||| |||||||||||||||||| | | ||||||||||||||| |||||||||||| |||||  |||| ||||||||||| |||| ||||||||||||    
T  10468684 caaaacattaaataggcacatgtgaacggtgacgtgacaacttgcaatgtgtatccaccttagatattgggttaacggttttgacgg-tgggaatttatt 10468586  T
Q  112 tggttgatggaagatgacttaaatggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaat 210  Q
    ||||||| ||||||||||||||| ||| |||||||||||||||| ||||||    |||||||||||| ||||||||||||||| ||||||||||| ||||    
T  10468585 tggttgacggaagatgacttaaagggaccaaattgtaacgttaaaaacttagatgactaaaatgtaaccaacaaataacttaagggaccacatcagtaat 10468486  T
Q  211 taag 214  Q
    ||||    
T  10468485 taag 10468482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 12 - 214
Target Start/End: Complemental strand, 12585362 - 12585160
Alignment:
Q  12 caaaacgttaaataggcacatgtgatctgcgacgtgacaacttgcgatgtgtatccacgttagacgttggcttaacggttttaacggttgggaatttatt 111  Q
    ||||||||||||||||||||||||| | | ||||||||||||||| |||||||||||| |||||| |||| ||||| ||||| || ||  ||| ||||||    
T  12585362 caaaacgttaaataggcacatgtgaacggtgacgtgacaacttgcaatgtgtatccaccttagacattggtttaacagttttgacagtgagga-tttatt 12585264  T
Q  112 tggttgatggaagatgacttaaatggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaat 210  Q
    | ||||| | ||||||||||||| |||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||| ||||||| ||||||||    
T  12585263 ttgttgacgaaagatgacttaaagggatcaaattgtaatgttaataacttatgagactaaaatgtaatcaacaaataacttaagggaccacgtcattaat 12585164  T
Q  211 taag 214  Q
    ||||    
T  12585163 taag 12585160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 12 - 212
Target Start/End: Original strand, 52677684 - 52677884
Alignment:
Q  12 caaaacgttaaataggcacatgtgatctgcgacgtgacaacttgcgatgtgtatccacgttagacgttggcttaacggttttaacggttgggaatttatt 111  Q
    ||||| ||||||||||||||||||| |||  |||||||||||||| |||||||||||| |||||| |||| ||||||||||| |||| || |||||||||    
T  52677684 caaaatgttaaataggcacatgtgaactgttacgtgacaacttgcaatgtgtatccaccttagacattggattaacggttttgacgg-tgagaatttatt 52677782  T
Q  112 tggttgatggaagatgacttaaatggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaat 210  Q
    ||||||| | ||||| ||||||| ||| |||||| |||| |||||||||||||  |||||||||||| ||||||||||| ||| ||||||||||||||||    
T  52677783 tggttgacgtaagataacttaaagggaccaaattataacattaataacttatgagactaaaatgtaaccaacaaataacctaagggaccacatcattaat 52677882  T
Q  211 ta 212  Q
    ||    
T  52677883 ta 52677884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 15 - 214
Target Start/End: Complemental strand, 10286611 - 10286412
Alignment:
Q  15 aacgttaaataggcacatgtgatctgcgacgtgacaacttgcgatgtgtatccacgttagacgttggcttaacggttttaacggttgggaatttatttgg 114  Q
    |||| |||||||||| |||||| | | ||||||||||||||| |||| ||| ||| |||||| |||  ||||||||||| ||||| || || ||||||||    
T  10286611 aacgctaaataggcagatgtgaacagtgacgtgacaacttgcaatgtttattcaccttagacattgatttaacggttttgacggt-ggaaaattatttgg 10286513  T
Q  115 ttgatggaagatgacttaaatggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaa 213  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||| |||||| ||||||||||||    
T  10286512 ttgaaggaagatgacttaaagggatcaaattgtaacgttaataactaatgggactaaaatgtaaccaacaaataacttaagggaccaaatcattaattaa 10286413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 12 - 194
Target Start/End: Original strand, 16067456 - 16067637
Alignment:
Q  12 caaaacgttaaataggcacatgtgatctgcgacgtgacaacttgcgatgtgtatccacgttagacgttggcttaacggttttaacggttgggaatttatt 111  Q
    ||||||||||||||||||||||||| | | |||||||||||||||||||||||||||  |||||| |||||||||||||||| || | || |||||||||    
T  16067456 caaaacgttaaataggcacatgtgaacggtgacgtgacaacttgcgatgtgtatccatcttagacattggcttaacggttttgacag-tgagaatttatt 16067554  T
Q  112 tggttgatggaagatgacttaaatggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa 194  Q
    |||||   ||||||||||||||  ||| |||||||||||||||||||||||||  |||||||||||| |||||||||| ||||    
T  16067555 tggttagcggaagatgacttaaggggaccaaattgtaacgttaataacttatgagactaaaatgtaaccaacaaataatttaa 16067637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 12 - 212
Target Start/End: Complemental strand, 49028467 - 49028267
Alignment:
Q  12 caaaacgttaaataggcacatgtgatctgcgacgtgacaacttgcgatgtgtatccacgttagacgttggcttaacggttttaacggttgggaatttatt 111  Q
    |||||| ||||||||  |||||||| | | || |||||||||| | |||||||||||| |||||| |||  ||||||||||| ||||| |||| ||||||    
T  49028467 caaaacattaaatagatacatgtgaacagtgatgtgacaacttacaatgtgtatccactttagacattgagttaacggttttgacggtgggga-tttatt 49028369  T
Q  112 tggttgatggaagatgacttaaatggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaat 210  Q
    ||||||| |||||||  |||||| ||| ||||| ||||||||||||| |||||| |||||||||||| ||||||||||||||| |||||||||||| |||    
T  49028368 tggttgacggaagatagcttaaagggaccaaatggtaacgttaataatttatgggactaaaatgtaaccaacaaataacttaagggaccacatcatcaat 49028269  T
Q  211 ta 212  Q
    ||    
T  49028268 ta 49028267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 12 - 213
Target Start/End: Original strand, 21038246 - 21038445
Alignment:
Q  12 caaaacgttaaataggcacatgtgatctgcgacgtgacaacttgcgatgtgtatccacgttagacgttggcttaacggttttaacggttgggaatttatt 111  Q
    ||||| |||||||| ||||||| || | | |||| |||||||||| |||| |||||||  ||||| |||||||||||||||| ||||| | || ||||||    
T  21038246 caaaatgttaaatatgcacatgagaacagtgacgcgacaacttgcaatgtatatccaccatagacattggcttaacggttttgacggtggaga-tttatt 21038344  T
Q  112 tggttgatggaagatgacttaaatggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaat 210  Q
    ||||||| |||||||||||||||||||  ||||| ||||||||||||||||  | |||||||||||| || |||||||||||| ||| ||||||||||||    
T  21038345 tggttgacggaagatgacttaaatggactaaattataacgttaataactta--ggactaaaatgtaaccagcaaataacttaagggatcacatcattaat 21038442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 44 - 215
Target Start/End: Complemental strand, 36098917 - 36098746
Alignment:
Q  44 cgtgacaacttgcgatgtgtatccacgttagacgttggcttaacggttttaacggttgggaatttatttggttgatggaagatgacttaaatggatcaaa 143  Q
    ||||||| ||||| |||||||||||| |||||  |||| ||||||||||| ||||| | || ||||||| ||||| |||||||  |||||| ||| ||||    
T  36098917 cgtgacagcttgcaatgtgtatccaccttagatattggattaacggttttgacggtggaga-tttatttagttgacggaagatagcttaaagggaccaaa 36098819  T
Q  144 ttgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaag-gaccacatcattaattaagt 215  Q
    || |||||||||||| ||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||    
T  36098818 ttataacgttaataatttatggaactaaaatataaccaacaaataacttaagagaccacatcattaattaagt 36098746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 12 - 214
Target Start/End: Original strand, 622189 - 622391
Alignment:
Q  12 caaaacgttaaataggcacatgtgatctgcgacgtgacaacttgcgatgtgtatccacgttagacgttggcttaacggttttaacggttgggaatttatt 111  Q
    ||||||||||||||| ||||||||| | | ||||||||||||||| ||  | |||||  |||||| ||||||||||||| || || |  |||| ||||||    
T  622189 caaaacgttaaatagacacatgtgaacggtgacgtgacaacttgcaattagaatccatcttagacattggcttaacggtgttgacagagggga-tttatt 622287  T
Q  112 tggttgatggaagatgacttaaatggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaat 210  Q
    ||||||||| || ||||||||||  |||||||| ||||| |||||||| ||| |  ||||||||||| ||||||||||||||| ||| ||||||||||||    
T  622288 tggttgatgaaaaatgacttaaaaagatcaaatcgtaacattaataacatataggtctaaaatgtaaccaacaaataacttaagggatcacatcattaat 622387  T
Q  211 taag 214  Q
    ||||    
T  622388 taag 622391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 12 - 155
Target Start/End: Complemental strand, 3990879 - 3990738
Alignment:
Q  12 caaaacgttaaataggcacatgtgatctgcgacgtgacaacttgcgatgtgtatccacgttagacgttggcttaacggttttaacggttgggaatttatt 111  Q
    ||||||||||||||||||| || || | | || |||||||||||| |||||||||||| |||||| |||||||||||||||| |||| ||||||||||||    
T  3990879 caaaacgttaaataggcacgtgcgaaccgtgatgtgacaacttgcaatgtgtatccaccttagacattggcttaacggttttgacgg-tgggaatttatt 3990781  T
Q  112 tggttgatggaagatgacttaaatggatcaaattgtaacgttaa 155  Q
    ||||||| |||||||||||||||  ||  |||||||||||||||    
T  3990780 tggttgacggaagatgacttaaa-agactaaattgtaacgttaa 3990738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 13 - 162
Target Start/End: Original strand, 9268156 - 9268304
Alignment:
Q  13 aaaacgttaaataggcacatgtgatctgcgacgtgacaacttgcgatgtgtatccacgttagacgttggcttaacggttttaacggttgggaatttattt 112  Q
    |||||| |||||| | |||||||| | | | ||||||||||||| || | ||||||| ||||||||||||||||||||||| | || |||| |||||||     
T  9268156 aaaacgctaaataaggacatgtgaacggtggcgtgacaacttgcaatatatatccaccttagacgttggcttaacggttttgatgg-tggggatttattc 9268254  T
Q  113 ggttgatggaagatgacttaaatggatcaaattgtaacgttaataactta 162  Q
    ||||| |||||||| || |||| | || ||||||||||||||||||||||    
T  9268255 ggttgctggaagataacctaaaggaattaaattgtaacgttaataactta 9268304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 140 - 212
Target Start/End: Complemental strand, 21038191 - 21038119
Alignment:
Q  140 caaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaaggaccacatcattaatta 212  Q
    |||||||||||||||||||||||| |||| ||||| ||||||||||| ||||||||||||| |||||||||||    
T  21038191 caaattgtaacgttaataacttattgaaccaaaatataatcaacaaacaacttaaggaccaaatcattaatta 21038119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 138 - 214
Target Start/End: Complemental strand, 45667310 - 45667233
Alignment:
Q  138 atcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 214  Q
    |||||||||||||||||||||||||||  || ||||||||| ||||||||||||||| |||||| |||||||||||||    
T  45667310 atcaaattgtaacgttaataacttatgagaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaag 45667233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 133 - 214
Target Start/End: Complemental strand, 52677636 - 52677554
Alignment:
Q  133 aatggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 214  Q
    |||||| |||||||||||||||||||||||||| || ||| ||||| ||||||||||||||| |||||| || ||||||||||    
T  52677636 aatggaccaaattgtaacgttaataacttatgggaccaaattgtaaccaacaaataacttaagggaccaaataattaattaag 52677554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 140 - 214
Target Start/End: Original strand, 3990934 - 3991009
Alignment:
Q  140 caaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 214  Q
    |||||||||||||||||||||||||| || ||||||||| |||||| |||||||| |||||| |||| ||||||||    
T  3990934 caaattgtaacgttaataacttatgggaccaaaatgtaaccaacaattaacttaagggaccaaatcaataattaag 3991009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 140 - 214
Target Start/End: Complemental strand, 9268100 - 9268025
Alignment:
Q  140 caaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 214  Q
    ||||||||||| |||||||||||||| || ||||||||| ||| ||||||||||| |||||| |||||||||||||    
T  9268100 caaattgtaactttaataacttatgggaccaaaatgtaaccaataaataacttaagggaccaaatcattaattaag 9268025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 140 - 214
Target Start/End: Original strand, 10468739 - 10468814
Alignment:
Q  140 caaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 214  Q
    |||||||||||||||||||||||||  || ||||||||| ||||||||||||||| |||||| || ||||||||||    
T  10468739 caaattgtaacgttaataacttatgagaccaaaatgtaaccaacaaataacttaagggaccaaatgattaattaag 10468814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 140 - 195
Target Start/End: Complemental strand, 16067401 - 16067346
Alignment:
Q  140 caaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaag 195  Q
    ||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||    
T  16067401 caaattgtaacgttaataatttatagaactaaaatgtaaccaacaaataacttaag 16067346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 9450923 - 9450992
Alignment:
Q  146 gtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 214  Q
    |||||||||||||||||||| || |||| |||| ||||||||||||||| |||||| |||||||||||||    
T  9450923 gtaacgttaataacttatgggaccaaaacgtaaccaacaaataacttaagggaccaaatcattaattaag 9450992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 141 - 213
Target Start/End: Complemental strand, 25225866 - 25225793
Alignment:
Q  141 aaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaa 213  Q
    ||||||||||||||||||||||||  || ||||| ||| ||||||||||||||| |||||| ||||||||||||    
T  25225866 aaattgtaacgttaataacttatgagaccaaaatataaccaacaaataacttaagggaccaaatcattaattaa 25225793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 140 - 215
Target Start/End: Original strand, 12585417 - 12585493
Alignment:
Q  140 caaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaagt 215  Q
    |||||||||| ||||||||||||||  |  ||||||||| ||||||||||||||| |||||| ||||||||||||||    
T  12585417 caaattgtaatgttaataacttatgagatcaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagt 12585493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 136 - 214
Target Start/End: Complemental strand, 9449796 - 9449717
Alignment:
Q  136 ggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 214  Q
    ||||||||  |||||||||||||||||||  || |||| |||| ||||||||||||||| |||||| |||||||||||||    
T  9449796 ggatcaaaacgtaacgttaataacttatgagaccaaaacgtaaccaacaaataacttaatggaccaaatcattaattaag 9449717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 140 - 214
Target Start/End: Original strand, 49028522 - 49028597
Alignment:
Q  140 caaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 214  Q
    ||||||||||| ||||||| |||||| || ||||||||| ||| ||||||||||| |||||| |||||||||||||    
T  49028522 caaattgtaacattaataatttatgggaccaaaatgtaaccaataaataacttaagggaccaaatcattaattaag 49028597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 213
Target Start/End: Complemental strand, 10202757 - 10202681
Alignment:
Q  138 atcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataactt-aaggaccacatcattaattaa 213  Q
    ||||||||||||||||||||| |||||| || ||||||||| || ||||||| || ||||| || ||||||||||||    
T  10202757 atcaaattgtaacgttaataatttatgggaccaaaatgtaaccagcaaataatttaaaggatcaaatcattaattaa 10202681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 144 - 214
Target Start/End: Complemental strand, 17931361 - 17931290
Alignment:
Q  144 ttgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 214  Q
    |||||||||||||||||||||| || ||| ||||| ||| ||||||||||| ||||||  ||||||||||||    
T  17931361 ttgtaacgttaataacttatgggaccaaattgtaaccaataaataacttaagggaccaattcattaattaag 17931290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 4437751 - 4437682
Alignment:
Q  146 gtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 214  Q
    |||||||||||||||||||| || ||| ||||| |||||||||| |||| |||||| | |||||||||||    
T  4437751 gtaacgttaataacttatgggaccaaattgtaaccaacaaataatttaatggaccaaaccattaattaag 4437682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 4439038 - 4439107
Alignment:
Q  146 gtaacgttaataacttatggaactaaaatgtaatcaacaaataac-ttaaggaccacatcattaattaag 214  Q
    |||||||||||||||||||  || ||| ||||| ||||||||||| ||| ||||||| ||||||||||||    
T  4439038 gtaacgttaataacttatgagaccaaattgtaaccaacaaataactttagggaccacgtcattaattaag 4439107  T

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Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 21325695 - 21325764
Alignment:
Q  146 gtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaag-gaccacatcattaattaag 214  Q
    ||||||||||||||| |||  |||||||||||| |||||||||| ||||| || || |||||||||||||    
T  21325695 gtaacgttaataactaatgtgactaaaatgtaaccaacaaataatttaagagatcaaatcattaattaag 21325764  T

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Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 28450821 - 28450752
Alignment:
Q  146 gtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 214  Q
    ||||| |||||||||||||| |  ||||||||| |||||||||| |||| |||||| |||||||||||||    
T  28450821 gtaacattaataacttatgggatcaaaatgtaaccaacaaataatttaagggaccaaatcattaattaag 28450752  T

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Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 214
Target Start/End: Original strand, 17932138 - 17932209
Alignment:
Q  144 ttgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 214  Q
    ||||||| |||||||||||||| || ||| ||||| ||| ||||||||||| ||||||  ||||||||||||    
T  17932138 ttgtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagggaccaattcattaattaag 17932209  T

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Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 198
Target Start/End: Complemental strand, 622134 - 622077
Alignment:
Q  140 caaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaaggac 198  Q
    |||||| ||||||||||||| |||||| | ||||| |||||||||||||||||| ||||    
T  622134 caaattataacgttaataacgtatggatc-aaaatataatcaacaaataacttatggac 622077  T

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Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 28451541 - 28451610
Alignment:
Q  146 gtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 214  Q
    |||| ||||||| ||||||  || ||||||||| ||||||||||||||| |||| | |||||||||||||    
T  28451541 gtaatgttaatatcttatgagaccaaaatgtaaccaacaaataacttaagggactaaatcattaattaag 28451610  T

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Target: scaffold0069 (Bit Score: 93; Significance: 7e-45; HSPs: 2)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 13 - 214
Target Start/End: Original strand, 20028 - 20232
Alignment:
Q  13 aaaacgttaaataggcacatgtgatctgcgacgtgacaacttgcgatgtgtatccacgttagacgttggcttaacggttttaa----cggttgggaattt 108  Q
    |||||||||||||||||||||||| | | ||||||||||||||| | ||||||| || |||||| || | ||||||||||| |    |||| |||| |||    
T  20028 aaaacgttaaataggcacatgtgaacggtgacgtgacaacttgcaacgtgtatctaccttagacattaggttaacggttttgagtgacggtgggga-ttt 20126  T
Q  109 atttggttgatggaagatgacttaaatggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaaggaccacatcatta 208  Q
    |||| |||||||||||||   ||||| ||| ||||||||||||||||||| |||||||| |||||| ||| |||||||||||||||||||||||||||||    
T  20127 atttagttgatggaagatagtttaaagggaccaaattgtaacgttaataaattatggaattaaaatataaccaacaaataacttaaggaccacatcatta 20226  T
Q  209 attaag 214  Q
    ||||||    
T  20227 attaag 20232  T

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Target: scaffold0069; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 140 - 216
Target Start/End: Complemental strand, 19972 - 19895
Alignment:
Q  140 caaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaagtt 216  Q
    |||||||||||||||||||||||||  || ||||||||| ||||||||||||||| |||||| |||||||||||||||    
T  19972 caaattgtaacgttaataacttatgcgaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagtt 19895  T

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Target: scaffold0006 (Bit Score: 87; Significance: 3e-41; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 12 - 194
Target Start/End: Original strand, 93763 - 93944
Alignment:
Q  12 caaaacgttaaataggcacatgtgatctgcgacgtgacaacttgcgatgtgtatccacgttagacgttggcttaacggttttaacggttgggaatttatt 111  Q
    ||||||||||||||||||||||||| | | ||||| ||||||||| | || |||| || |||||| |||| ||||||||||| ||||| |||| ||||||    
T  93763 caaaacgttaaataggcacatgtgaacggtgacgtaacaacttgcaacgtatatctaccttagacattggattaacggttttgacggtgggga-tttatt 93861  T
Q  112 tggttgatggaagatgacttaaatggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa 194  Q
    ||||| | |||||||  |||||| ||||||||||||||||||||||| |||||| |||||||||||| |||||||||| ||||    
T  93862 tggttaacggaagatagcttaaaaggatcaaattgtaacgttaataatttatgggactaaaatgtaaccaacaaataaattaa 93944  T

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Target: scaffold0006; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 141 - 214
Target Start/End: Complemental strand, 93707 - 93634
Alignment:
Q  141 aaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaaggaccacatcattaattaag 214  Q
    |||||||||||||||||| |||||| || |||||||||  ||||||||||||||||| || |||||||||||||    
T  93707 aaattgtaacgttaataatttatgggaccaaaatgtaactaacaaataacttaaggatcaaatcattaattaag 93634  T

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Target: scaffold0008 (Bit Score: 84; Significance: 2e-39; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 12 - 205
Target Start/End: Complemental strand, 266824 - 266632
Alignment:
Q  12 caaaacgttaaataggcacatgtgatctgcgacgtgacaacttgcgatgtgtatccacgttagacgttggcttaacggttttaacggttgggaatttatt 111  Q
    |||||||||||||||| ||||||||   | ||||||||||||||  |||||||| ||| |||||| |||| ||||||||||| |||  ||||||||||||    
T  266824 caaaacgttaaataggaacatgtgaatggtgacgtgacaacttgtaatgtgtattcaccttagacattgggttaacggttttgacg--tgggaatttatt 266727  T
Q  112 tggttgatggaagatgacttaaatggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaagg-accacatca 205  Q
    ||||||| | ||||| | ||||| ||| |||||| |||| |||||||||||| | |||||||||||| ||||||||||||||||| |||||||||    
T  266726 tggttgacgtaagataatttaaagggaccaaattataacattaataacttatcggactaaaatgtaaccaacaaataacttaaggaaccacatca 266632  T

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Target: scaffold0008; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 213
Target Start/End: Original strand, 266879 - 266953
Alignment:
Q  140 caaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataactt-aaggaccacatcattaattaa 213  Q
    |||||| ||| ||||||||||||||  || ||||||||| ||||||||||||| |||||||| ||||||||||||    
T  266879 caaattataaggttaataacttatgtgaccaaaatgtaaccaacaaataacttaaaggaccaaatcattaattaa 266953  T

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Target: chr1 (Bit Score: 72; Significance: 2e-32; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 12 - 215
Target Start/End: Complemental strand, 37499376 - 37499177
Alignment:
Q  12 caaaacgttaaataggcacatgtgatctgcgacgtgacaacttgcgatgtgtatccacgttagacgttggcttaacggttttaacggttgggaatttatt 111  Q
    ||||||||||||||||||||||||| | | ||||||||||||||| |||||||||||| ||||||  || |||||||||||| |||| ||  ||||||||    
T  37499376 caaaacgttaaataggcacatgtgaacggtgacgtgacaacttgcaatgtgtatccaccttagacactgacttaacggttttgacgg-tgaaaatttatt 37499278  T
Q  112 tggttgatggaagatgacttaaatggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaat 210  Q
    ||||| |  |||||||||||||| |||  ||||||||||    ||   |||||  | |||||||||| ||||||||||||||| |||||| |||||||||    
T  37499277 tggttaacagaagatgacttaaagggactaaattgtaac----attggttatgagattaaaatgtaagcaacaaataacttaagggaccaaatcattaat 37499182  T

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Target: chr1; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 138 - 214
Target Start/End: Original strand, 30335229 - 30335305
Alignment:
Q  138 atcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaaggaccacatcattaattaag 214  Q
    |||||||||||||||||||||||||||  |||||| |||||  ||||||||||||||||||||||||||||||||||    
T  30335229 atcaaattgtaacgttaataacttatgagactaaagtgtaagtaacaaataacttaaggaccacatcattaattaag 30335305  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 9114890 - 9114821
Alignment:
Q  146 gtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 214  Q
    |||||||||||||||||||| || ||||||||| ||||||||||||||| |||| | |||||||||||||    
T  9114890 gtaacgttaataacttatgggaccaaaatgtaaccaacaaataacttaagggacaaaatcattaattaag 9114821  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 14903877 - 14903808
Alignment:
Q  146 gtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 214  Q
    |||||||||||||||||||| |  ||||||||| ||||||||||||||| |||||| |||||||||||||    
T  14903877 gtaacgttaataacttatgggatcaaaatgtaaccaacaaataacttaagggaccaaatcattaattaag 14903808  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 14904596 - 14904665
Alignment:
Q  146 gtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 214  Q
    |||| ||||||| ||||||| || ||||||||| ||||||||||||||| |||| | |||||||||||||    
T  14904596 gtaatgttaatatcttatgggaccaaaatgtaaccaacaaataacttaagggactaaatcattaattaag 14904665  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 17690936 - 17691005
Alignment:
Q  146 gtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 214  Q
    |||||||||||||||||||| || | ||  ||| ||||||||||||||| |||||| |||||||||||||    
T  17690936 gtaacgttaataacttatgggaccagaacataaccaacaaataacttaagggaccaaatcattaattaag 17691005  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 30335126 - 30335181
Alignment:
Q  78 ttggcttaacggttttaacggttgggaatttatttggttgatggaagatgacttaaa 134  Q
    |||||||||||||||| ||||| || ||||||||||||||||  |||||||||||||    
T  30335126 ttggcttaacggttttgacggt-ggaaatttatttggttgatcaaagatgacttaaa 30335181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 215
Target Start/End: Complemental strand, 17689807 - 17689737
Alignment:
Q  145 tgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaagt 215  Q
    ||||||||| ||||||||||  || |||  |||||||||||||||||||| |||||| ||||||||||||||    
T  17689807 tgtaacgtttataacttatgagaccaaac-gtaatcaacaaataacttaagggaccaaatcattaattaagt 17689737  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 148 - 194
Target Start/End: Original strand, 9116064 - 9116110
Alignment:
Q  148 aacgttaataacttatggaactaaaatgtaatcaacaaataacttaa 194  Q
    |||||||||||||||||  || ||||||||| |||||||||||||||    
T  9116064 aacgttaataacttatgagaccaaaatgtaaccaacaaataacttaa 9116110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 141 - 195
Target Start/End: Original strand, 37499432 - 37499486
Alignment:
Q  141 aaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaag 195  Q
    ||||| |||| |||||||||||||  || ||||||||| ||||||||||||||||    
T  37499432 aaattataacattaataacttatgagaccaaaatgtaaccaacaaataacttaag 37499486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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