View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7445_high_2 (Length: 247)
Name: NF7445_high_2
Description: NF7445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7445_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 50 - 150
Target Start/End: Original strand, 35380279 - 35380379
Alignment:
| Q |
50 |
agagagtattccattacgtatttatgacaaaaaataatgattaaatatacttttataaaattgtgacatccatttattcgtttattattttcttattttg |
149 |
Q |
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| T |
35380279 |
agagagtattccattacgtatttatgacaaaaaataatgaataaatatacttttataaaattatgccatctatttattcgtttattattttcttattttg |
35380378 |
T |
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| Q |
150 |
t |
150 |
Q |
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| T |
35380379 |
t |
35380379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 113 - 247
Target Start/End: Original strand, 35433466 - 35433600
Alignment:
| Q |
113 |
tgacatccatttattcgtttattattttcttattttgtttggtaacaccttaatggaagttgatctagcaatatagagtagta--atagaataagtgcat |
210 |
Q |
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| T |
35433466 |
tgacatctatttattcgtttaatattttcttaatttgtgtggtaataccttaatggaagttgat-tataaatagagaata-tactatagaataagtgcat |
35433563 |
T |
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| Q |
211 |
taacaatttcagtgttctcttccaattattatgtact |
247 |
Q |
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| T |
35433564 |
taacaatttcggtgttctcttccaattattatgtact |
35433600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 116
Target Start/End: Original strand, 35432165 - 35432227
Alignment:
| Q |
54 |
agtattccattacgtatttatgacaaaaaataatgattaaatatacttttataaaattgtgac |
116 |
Q |
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||||||||||||||| |||||||| | ||||||||| |||||||| |||||||||||| |||| |
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| T |
35432165 |
agtattccattacgtttttatgacgataaataatgaataaatatatttttataaaattatgac |
35432227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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