View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7445_low_1 (Length: 381)
Name: NF7445_low_1
Description: NF7445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7445_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 19 - 312
Target Start/End: Complemental strand, 12218889 - 12218592
Alignment:
| Q |
19 |
ccacataaaagatatctgcagatggctaaattcctgaaagtgagacttaggagtcatggtggccatcattggatatataggt----cttcaaccactgca |
114 |
Q |
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| T |
12218889 |
ccacataaaagatatctgcagatggctaaattcctgaaagcgagacttaggagtcatggtggccttcattggatatataggtaatgcttcagccactgat |
12218790 |
T |
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| Q |
115 |
gctgaaagtgtaccctaccaacgtaagataattgtctagccttccatgcgtctaaatttgctttacttgactgattatatatatactgacaatcagctgg |
214 |
Q |
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| T |
12218789 |
gctgaaagtgtaccctaccaacttaagataattgtctagccttccatgcatctaaatttgctttacttgactgattatatatatactgacaatcagctgg |
12218690 |
T |
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| Q |
215 |
ccgaggagctttaccaaggataggaaatccaaagtgtttgccgaatgtaacagtttctccaaagccagatgtttgcactggtaaatgcatgacgcttc |
312 |
Q |
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| T |
12218689 |
ccgaggagctttaccaaggataggaactccaaagtatttgccgaatgtaacagtttctctaaagccagatgtttgcactgataaatgcatgacgcttc |
12218592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 318 - 369
Target Start/End: Complemental strand, 12218021 - 12217970
Alignment:
| Q |
318 |
tgtaatttttccttagacacaattggcttgtagttgtaagttatgtcctttc |
369 |
Q |
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| T |
12218021 |
tgtaatttttccttagacacaattggcttgtagttgtaagttatgtcctttc |
12217970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 321 - 369
Target Start/End: Complemental strand, 5412975 - 5412927
Alignment:
| Q |
321 |
aatttttccttagacacaattggcttgtagttgtaagttatgtcctttc |
369 |
Q |
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| T |
5412975 |
aatttttccatagacaaaattggctggtagtggtaggttatgtcctttc |
5412927 |
T |
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