View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7446_high_1 (Length: 434)

Name: NF7446_high_1
Description: NF7446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7446_high_1
NF7446_high_1
[»] chr8 (5 HSPs)
chr8 (116-434)||(16343357-16343672)
chr8 (6-95)||(16343664-16343753)
chr8 (100-146)||(10538281-10538327)
chr8 (113-154)||(30880719-30880760)
chr8 (37-149)||(6162457-6162569)
[»] chr5 (1 HSPs)
chr5 (61-243)||(12042522-12042703)
[»] scaffold0196 (1 HSPs)
scaffold0196 (168-377)||(30770-30975)
[»] chr3 (2 HSPs)
chr3 (168-214)||(49286080-49286126)
chr3 (43-125)||(9754414-9754496)
[»] chr6 (3 HSPs)
chr6 (310-346)||(11210618-11210654)
chr6 (178-246)||(21985555-21985622)
chr6 (178-246)||(33348896-33348963)
[»] chr2 (1 HSPs)
chr2 (110-141)||(31437712-31437743)
[»] chr7 (1 HSPs)
chr7 (178-216)||(8558379-8558417)
[»] scaffold0023 (1 HSPs)
scaffold0023 (112-149)||(138709-138746)
[»] chr4 (1 HSPs)
chr4 (113-154)||(18621191-18621232)
[»] chr1 (2 HSPs)
chr1 (178-246)||(19103447-19103514)
chr1 (178-246)||(21468414-21468481)


Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 116 - 434
Target Start/End: Complemental strand, 16343672 - 16343357
Alignment:
Q  116 ttccttggcaattaaggaacagatgggagaactgcttgcttatgattagtagtatgcacttcatgatcactcacatctttagagaaggaaatcactgtgc 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  16343672 ttccttggcaattaaggaacagatgggagaactgcttgcttatgattagtagtatgcacttcatgatcactcacatctttagagaaggaaaacactgtgc 16343573  T
Q  216 aagataagctagccagcctaggtttaaccgtgtgatcaattttgcttggtgggactatgctcctgtagaaattttggcagacttgactagtaagaggtta 315  Q
    | ||||||||||||| |||||||||||| |||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  16343572 a-gataagctagccaacctaggtttaacggtg--atcaattttgcttggtgggactatgcttctgtagaaattttggcagacttgactagtaataggtta 16343476  T
Q  316 tgtcttcctaatttcagattttgctaatgttttgtgggtcaggtttgcccccacatctttgtaatattttatctttttatatatattttggtcagtgtct 415  Q
     ||||||||||||||||||||||||||||||||| |||| ||||||| |||| | |||||||||||||||||||| |||||||||||||||||| ||||     
T  16343475 ggtcttcctaatttcagattttgctaatgttttgagggttaggtttggccccccctctttgtaatattttatcttattatatatattttggtcactgtcc 16343376  T
Q  416 cccaatgataaaccttttt 434  Q
    ||||| || ||||||||||    
T  16343375 cccaaagacaaaccttttt 16343357  T

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Target: chr8; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 6 - 95
Target Start/End: Complemental strand, 16343753 - 16343664
Alignment:
Q  6 ctttggtgttattttggctattaagtgtgctcatcaaagaaactggaataacttgtggattgcaactgactctatgctggcttccttggc 95  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16343753 ctttggtgttattttggctattgagtgtgctcatcaaagaaactggaataacttgtggattgcaactgactctatgctggcttccttggc 16343664  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 100 - 146
Target Start/End: Original strand, 10538281 - 10538327
Alignment:
Q  100 aagtcatcacacattgttccttggcaattaaggaacagatgggagaa 146  Q
    |||| |||||||||||||||||||||||||| |||| ||||||||||    
T  10538281 aagttatcacacattgttccttggcaattaaagaacggatgggagaa 10538327  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 113 - 154
Target Start/End: Complemental strand, 30880760 - 30880719
Alignment:
Q  113 ttgttccttggcaattaaggaacagatgggagaactgcttgc 154  Q
    ||||||||||||||||||| |||| |||||||||||||||||    
T  30880760 ttgttccttggcaattaagaaacatatgggagaactgcttgc 30880719  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 149
Target Start/End: Complemental strand, 6162569 - 6162457
Alignment:
Q  37 catcaaagaaactggaataacttgtggattgcaactgactctatgctggcttccttggctttcaagtcatcacacattgttccttggcaattaaggaaca 136  Q
    ||||||| ||||||| ||||||| ||| ||| ||||||||||||||| | ||  ||||| ||||| ||  || | ||||||||||||||  | |||||||    
T  6162569 catcaaaaaaactggcataacttttggcttgaaactgactctatgctagtttttttggccttcaaatctgcaaagattgttccttggcatctgaggaaca 6162470  T
Q  137 gatgggagaactg 149  Q
    | ||||| |||||    
T  6162469 ggtgggacaactg 6162457  T

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Target: chr5 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 61 - 243
Target Start/End: Complemental strand, 12042703 - 12042522
Alignment:
Q  61 tggattgcaactgactctatgctggcttccttggctttcaagtcatcacacattgttccttggcaattaaggaacagatgggagaactgcttgcttatga 160  Q
    |||||||  |||||||| ||||| ||||||||||| || |||||| | || | ||| ||||||||||| | ||| ||||| || || |||||||||||||    
T  12042703 tggattgacactgactcaatgctagcttccttggcatttaagtcaccccatactgtcccttggcaattgaagaatagatgagaaaattgcttgcttatga 12042604  T
Q  161 ttagtagtatgcacttcatgatcactcacatctttagagaaggaaatcactgtgcaagataagctagccagcctaggtttaac 243  Q
    | |||| |||||| || ||||| ||||| |||||||||||||| ||| | ||||| |||||||||||| |  |||||||||||    
T  12042603 tcagtaatatgcatttgatgattactcatatctttagagaaggtaattattgtgc-agataagctagctaatctaggtttaac 12042522  T

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Target: scaffold0196 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 168 - 377
Target Start/End: Original strand, 30770 - 30975
Alignment:
Q  168 tatgcacttcatgatcactcacatctttagagaaggaaatcactgtgcaagataagctagccagcctaggtttaaccgtgtgatcaattttgcttggtgg 267  Q
    ||||||||||||||| |||||||||||||||||||| || || |||||  |||||||| || |   ||||| |||  ||||| | |||||  ||||||||    
T  30770 tatgcacttcatgattactcacatctttagagaaggtaaccattgtgc-tgataagcttgcgaatttaggtctaa--gtgtggtaaatttcacttggtgg 30866  T
Q  268 gactatgctcctgtagaaattttggcagacttgactagtaagaggttatgtcttcctaatttcagattttgctaatgttttgtgggtcaggtttgccccc 367  Q
     | ||  |||||| ||| ||| | | ||||||  |||| || || ||| |||||||| ||||||||||||| |||| || || |||||||||||| ||||    
T  30867 aattaccctcctgcagagattctagaagacttatctagaaatagattaggtcttccttatttcagattttgttaat-ttctgagggtcaggtttggcccc 30965  T
Q  368 acatctttgt 377  Q
     | |||||||    
T  30966 ccctctttgt 30975  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 168 - 214
Target Start/End: Complemental strand, 49286126 - 49286080
Alignment:
Q  168 tatgcacttcatgatcactcacatctttagagaaggaaatcactgtg 214  Q
    ||||||||||||||| |||||||||||||||||||| ||||| ||||    
T  49286126 tatgcacttcatgattactcacatctttagagaaggtaatcattgtg 49286080  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 125
Target Start/End: Original strand, 9754414 - 9754496
Alignment:
Q  43 agaaactggaataacttgtggattgcaactgactctatgctggcttccttggctttcaagtcatcacacattgttccttggca 125  Q
    |||||||||||||| ||||||||||  ||||||||||   | ||| |||||||| |||||||||| || || ||||| |||||    
T  9754414 agaaactggaataatttgtggattgagactgactctagattagctaccttggctatcaagtcatctcatatagttccctggca 9754496  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 310 - 346
Target Start/End: Complemental strand, 11210654 - 11210618
Alignment:
Q  310 aggttatgtcttcctaatttcagattttgctaatgtt 346  Q
    |||||| ||||||||||||||||||||||||||||||    
T  11210654 aggttaggtcttcctaatttcagattttgctaatgtt 11210618  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 178 - 246
Target Start/End: Original strand, 21985555 - 21985622
Alignment:
Q  178 atgatcactcacatctttagagaaggaaatcactgtgcaagataagctagccagcctaggtttaaccgt 246  Q
    |||||||| ||||| | ||| ||||||||||| |||||  ||||||||||||||| |||| ||||||||    
T  21985555 atgatcacacacatgtatagcgaaggaaatcattgtgct-gataagctagccagcatagggttaaccgt 21985622  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 178 - 246
Target Start/End: Complemental strand, 33348963 - 33348896
Alignment:
Q  178 atgatcactcacatctttagagaaggaaatcactgtgcaagataagctagccagcctaggtttaaccgt 246  Q
    |||||||| ||||| | ||| ||||||||||| |||||  ||||||||||||||| |||| ||||||||    
T  33348963 atgatcacacacatgtatagcgaaggaaatcattgtgct-gataagctagccagcatagggttaaccgt 33348896  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 141
Target Start/End: Complemental strand, 31437743 - 31437712
Alignment:
Q  110 acattgttccttggcaattaaggaacagatgg 141  Q
    ||||||||||||||||||||||||||||||||    
T  31437743 acattgttccttggcaattaaggaacagatgg 31437712  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 216
Target Start/End: Complemental strand, 8558417 - 8558379
Alignment:
Q  178 atgatcactcacatctttagagaaggaaatcactgtgca 216  Q
    |||||||||||||||| ||| ||||||||||||||||||    
T  8558417 atgatcactcacatctatagggaaggaaatcactgtgca 8558379  T

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Target: scaffold0023 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 149
Target Start/End: Complemental strand, 138746 - 138709
Alignment:
Q  112 attgttccttggcaattaaggaacagatgggagaactg 149  Q
    |||||||||||||||||||| ||||||||||| |||||    
T  138746 attgttccttggcaattaagaaacagatgggaaaactg 138709  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 154
Target Start/End: Original strand, 18621191 - 18621232
Alignment:
Q  113 ttgttccttggcaattaaggaacagatgggagaactgcttgc 154  Q
    |||||||||||||||| || ||||||||||| ||||||||||    
T  18621191 ttgttccttggcaattgagaaacagatgggaaaactgcttgc 18621232  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 178 - 246
Target Start/End: Complemental strand, 19103514 - 19103447
Alignment:
Q  178 atgatcactcacatctttagagaaggaaatcactgtgcaagataagctagccagcctaggtttaaccgt 246  Q
    |||||||| ||||| | ||| ||||||||||| |||||  ||||||||||||||| |||| ||||||||    
T  19103514 atgatcacacacatgtatagcgaaggaaatcattgtgct-gataagctagccagcatagggttaaccgt 19103447  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 178 - 246
Target Start/End: Complemental strand, 21468481 - 21468414
Alignment:
Q  178 atgatcactcacatctttagagaaggaaatcactgtgcaagataagctagccagcctaggtttaaccgt 246  Q
    |||||||| ||||| | ||| ||||||||||| |||||  ||||||||||||||| |||| ||||||||    
T  21468481 atgatcacacacatgtatagcgaaggaaatcattgtgct-gataagctagccagcatagggttaaccgt 21468414  T

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