View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7446_high_3 (Length: 339)
Name: NF7446_high_3
Description: NF7446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7446_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 20 - 329
Target Start/End: Original strand, 40953830 - 40954139
Alignment:
| Q |
20 |
atatcgatccaacaacaatagatgttgtgaccgtatgaatgcagtaaatgttgatggcaataatccaatctccgtagactacgccttcttatcacatcat |
119 |
Q |
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| T |
40953830 |
atatcgatccaacaacaatagatgttgtgaccgtatgaatgcagtaaatgttgatggcaacaatccaatctccgtagactacgccttcttatcacatcat |
40953929 |
T |
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| Q |
120 |
cagctgaatttcactgaaattttttcaatatcaagtatattgtgattatttgatgtaacataacataaaatgttggtccaactggtccaatgtattaaac |
219 |
Q |
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| T |
40953930 |
cagctgaatttcactgaaattttttcaatatcaagtatattgtgattatttgatgtaacataacataaaatgttggtccaactggtccaatgtattaaac |
40954029 |
T |
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| Q |
220 |
cnnnnnnnctgtaacaatattaattcctatatatacagcattgtggaaactacaggaaggtagttactagttacaatggagcgtttgaagaaatcaccat |
319 |
Q |
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| T |
40954030 |
caaaaaaactgtaacaatattaattcctatatatacagcattgtggaaactacaggaaggtagttactagttacaatggagcgtttgaagaaatcaccat |
40954129 |
T |
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| Q |
320 |
caacttcatc |
329 |
Q |
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| T |
40954130 |
catcttcatc |
40954139 |
T |
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