View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7446_high_5 (Length: 239)
Name: NF7446_high_5
Description: NF7446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7446_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 147 - 223
Target Start/End: Original strand, 17407507 - 17407583
Alignment:
| Q |
147 |
atcataacacaaacaaaaatgcataacattagtctaaacatgccaccaatgtctcaaacattcgaccccgaagacat |
223 |
Q |
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| T |
17407507 |
atcataacacaaacaaaaatgcataacattagtctaaacatgccaccaatgtctcaaacattcgaccccgaagacat |
17407583 |
T |
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Target: chr1; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 17407361 - 17407410
Alignment:
| Q |
1 |
caccccttcactctatttatacccccacacatcttctttccctctccaca |
50 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17407361 |
caccccttcactctatttatacccccacacatcttctttccctctccaca |
17407410 |
T |
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