View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7446_low_3 (Length: 420)
Name: NF7446_low_3
Description: NF7446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7446_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 169 - 408
Target Start/End: Original strand, 17407130 - 17407370
Alignment:
| Q |
169 |
tgttgtgttggtttttaacacgaatacatatgacatcagacacgcttttaatatgaagtgttttacagtgctactatatttttaaacaattctattgatt |
268 |
Q |
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| T |
17407130 |
tgttatgtcggtttttgacacgaatacatatgacatcagacacgctttcaatataaaatgtttgatagtgctactatatttttaaacaattgtattgatt |
17407229 |
T |
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| Q |
269 |
cttggtgatgttatttatttcattcataaagatatctctaatcctaa-tcataagtcataacccatgtgttattattttccaatgacatcacatgctact |
367 |
Q |
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| T |
17407230 |
cttggtgatgttatttatttcattcataaagatatctctaatcataagtcataagtcataacccatgtgttattattttccaatgacatcacatgctact |
17407329 |
T |
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| Q |
368 |
ctgaaatcactgccacatcataaattcataccaccccttca |
408 |
Q |
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| T |
17407330 |
ctgaaaccactgccacatcataaattcataccaccccttca |
17407370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 13 - 119
Target Start/End: Original strand, 17406976 - 17407082
Alignment:
| Q |
13 |
aatatttgtcgaaagaggtcaatacaacnnnnnnntgaatacgagaatacttatatctcgtggagggcacttatatagtacatgtactaaaatcatcatt |
112 |
Q |
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||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
17406976 |
aatatttgtcgaaagagatcaatacaacaaaaaaatgaatacgagaatacttatatctcgtggagggcacttatatagtacatgtactaatatcatcatt |
17407075 |
T |
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| Q |
113 |
ttaacat |
119 |
Q |
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| T |
17407076 |
ttaacat |
17407082 |
T |
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