View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7446_low_8 (Length: 244)
Name: NF7446_low_8
Description: NF7446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7446_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 14 - 242
Target Start/End: Original strand, 16343001 - 16343228
Alignment:
| Q |
14 |
gacatcattttaggacggttgagtgttgggg-cgattttgctgggtaatcaagaattggtaaaagacatataaaatgattgtcaagttttgggtgaaggt |
112 |
Q |
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| T |
16343001 |
gacatcattttaggacggttgagtgttgggggcgattttgctgggta-tcaagaattggtaaaagacatataaaatgattgtcaagttttgagtgaaggt |
16343099 |
T |
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| Q |
113 |
tgttttgcgttgaaggnnnnnnnnttaaaagaataaggtgttgccttcgtgattgacataaaaaacatagtcaaagtattgaagaacggtttcaaaattt |
212 |
Q |
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| T |
16343100 |
tgttttgcgttgaagg-aaaaaaattaaaagaataaggtgttgccttcgtgattgacacaaaaaacatagtcaaagtattgaagaacggtatcaaaattt |
16343198 |
T |
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| Q |
213 |
aaattgtttttacgacttttggacagtaaa |
242 |
Q |
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| T |
16343199 |
aaattgtttttacgacttctggacagtaaa |
16343228 |
T |
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