View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7446_low_9 (Length: 242)
Name: NF7446_low_9
Description: NF7446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7446_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 6e-98; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 27 - 223
Target Start/End: Complemental strand, 32714329 - 32714133
Alignment:
| Q |
27 |
tttggagttccagatctcaacattgcaattgctgagagattcaagaaagatactggactaattgtagaccctgataacgaaattactgttacatctggtt |
126 |
Q |
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| T |
32714329 |
tttggagttccagatctcaacattgcaattgctgagagattcaagaaagatactggactaattgtagatcctgataacgaaattactgttacatctggtt |
32714230 |
T |
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| Q |
127 |
gcacagaagcaatagctgcaactatattaggattaataaatcccggtgatgaggttattctgtttgctcctttttatgattcttatggtgccacttt |
223 |
Q |
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| T |
32714229 |
gcacagaagcaatcgctgcaactgtattaggattaataaatcccggtgaagaggttattctgtttgctcctttttatgattcttatggtgccacttt |
32714133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 27 - 223
Target Start/End: Complemental strand, 32719591 - 32719395
Alignment:
| Q |
27 |
tttggagttccagatctcaacattgcaattgctgagagattcaagaaagatactggactaattgtagaccctgataacgaaattactgttacatctggtt |
126 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |
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| T |
32719591 |
tttggagttccagatctcaacattgcaattgctgagagattcaagaaagatactggactaattgtagaccctgataaagaaattactgttacaactggtt |
32719492 |
T |
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| Q |
127 |
gcacagaagcaatagctgcaactatattaggattaataaatcccggtgatgaggttattctgtttgctcctttttatgattcttatggtgccacttt |
223 |
Q |
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| T |
32719491 |
gcacagaagcaatcgctgcaactgcattaggatttataaatcccggtgatgaggttattttgtttgctcctttttatgattcttatggtgccacttt |
32719395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 29 - 223
Target Start/End: Complemental strand, 32710691 - 32710497
Alignment:
| Q |
29 |
tggagttccagatctcaacattgcaattgctgagagattcaagaaagatactggactaattgtagaccctgataacgaaattactgttacatctggttgc |
128 |
Q |
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|||||||||||| ||||||||||| ||| ||||||| | |||||||||||||| ||| |||||||||||| || |||||||||||||| ||||| ||| |
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| T |
32710691 |
tggagttccagacctcaacattgccatttctgagaggtataagaaagatactgggctagctgtagaccctgaaaaggaaattactgttacgtctgggtgc |
32710592 |
T |
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| Q |
129 |
acagaagcaatagctgcaactatattaggattaataaatcccggtgatgaggttattctgtttgctcctttttatgattcttatggtgccacttt |
223 |
Q |
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| T |
32710591 |
acggaagcaattgctgcaactgtgttaggattgataaatcccggtgatgaggttatcgtgtttgcccctttttatgattcttatgaagccacttt |
32710497 |
T |
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