View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7447_high_13 (Length: 258)

Name: NF7447_high_13
Description: NF7447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7447_high_13
NF7447_high_13
[»] chr3 (11 HSPs)
chr3 (20-243)||(9395252-9395475)
chr3 (23-227)||(9329832-9330033)
chr3 (66-223)||(9336579-9336733)
chr3 (32-151)||(9695608-9695727)
chr3 (28-149)||(9343846-9343967)
chr3 (66-143)||(9485969-9486046)
chr3 (28-149)||(9448315-9448436)
chr3 (66-143)||(13864243-13864320)
chr3 (86-151)||(16011695-16011760)
chr3 (97-151)||(9756450-9756504)
chr3 (96-144)||(9613916-9613964)
[»] chr7 (1 HSPs)
chr7 (82-151)||(450103-450172)
[»] chr6 (7 HSPs)
chr6 (66-151)||(7025795-7025880)
chr6 (66-151)||(7012859-7012944)
chr6 (66-151)||(7029852-7029937)
chr6 (66-151)||(7041535-7041620)
chr6 (66-151)||(9170856-9170941)
chr6 (66-151)||(9159487-9159572)
chr6 (66-143)||(7046878-7046955)
[»] chr1 (2 HSPs)
chr1 (66-151)||(231620-231705)
chr1 (66-151)||(246906-246991)
[»] chr5 (1 HSPs)
chr5 (86-150)||(18571170-18571234)


Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 20 - 243
Target Start/End: Original strand, 9395252 - 9395475
Alignment:
Q  20 cctaaacccaaatctgaagcacatgctgagaacgaataatcactctccaagaacaaaaccaaatctcctaaattagtcaacttcacccactttttctgct 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9395252 cctaaacccaaatctgaagcacatgctgagaacgaataatcactctccaagaacaaaaccaaatctcctaaattagtcaacttcacccactttttctgct 9395351  T
Q  120 tctcatcaagcctaaacacatcaatccttacaataacacgatcatcatttttatatatatccactagcaacaactgaaagtcactagtctcgaccaagaa 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9395352 tctcatcaagcctaaacacatcaatccttacaataacacgatcatcatttttatatatatccactagcaacaactgaaagtcactagtctcgaccaagaa 9395451  T
Q  220 tttactttctccgccaatcacagg 243  Q
    ||||||||||||||||||||||||    
T  9395452 tttactttctccgccaatcacagg 9395475  T

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Target: chr3; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 23 - 227
Target Start/End: Original strand, 9329832 - 9330033
Alignment:
Q  23 aaacccaaatctgaagcacatgctgagaacgaataatcactctccaagaacaaaaccaaatctcctaaattagtcaacttcacccactttttctgcttct 122  Q
    |||||||| || |||||| | || || ||||||||  || || ||||||||||||||  |||||||||||| | |||||| |||||| ||||||  ||||    
T  9329832 aaacccaactcggaagcagaagcagaaaacgaatatccattccccaagaacaaaaccttatctcctaaattcgccaacttgacccaccttttctctttct 9329931  T
Q  123 catcaagcctaaacacatcaatccttacaataacacgatcatcatttttatatatatccactagcaacaactgaaagtcactagtctcgaccaagaattt 222  Q
    |||||||||||||||||||||||| ||||  ||||||   || ||||| |||| ||||||| |||||||||| ||| |||||| ||||||||||||||||    
T  9329932 catcaagcctaaacacatcaatccatacaggaacacg---ataattttcatatctatccaccagcaacaactcaaactcactactctcgaccaagaattt 9330028  T
Q  223 acttt 227  Q
    |||||    
T  9330029 acttt 9330033  T

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Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 66 - 223
Target Start/End: Original strand, 9336579 - 9336733
Alignment:
Q  66 ccaagaacaaaaccaaatctcctaaattagtcaacttcacccactttttctgcttctcatcaagcctaaacacatcaatccttacaataacacgatcatc 165  Q
    ||||||||||||||  |||||||||||| |||| ||| |||||| ||||||  |||||||||||||||||||||||||||| ||||  |||||    ||     
T  9336579 ccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaaacacatcaatccatacaggaacac---aata 9336675  T
Q  166 atttttatatatatccactagcaacaactgaaagtcactagtctcgaccaagaattta 223  Q
    ||||| |||| ||||||| |||||||||| ||| |||||| |||||||||||||||||    
T  9336676 attttcatatctatccaccagcaacaactcaaactcactactctcgaccaagaattta 9336733  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 32 - 151
Target Start/End: Complemental strand, 9695727 - 9695608
Alignment:
Q  32 tctgaagcacatgctgagaacgaataatcactctccaagaacaaaaccaaatctcctaaattagtcaacttcacccactttttctgcttctcatcaagcc 131  Q
    ||||||||| |||| ||||||||| | ||   | |||| |||||||||  ||| |||||||| |||||||| |||||||| |||| ||||||||||||||    
T  9695727 tctgaagcagatgcagagaacgaacagtcttcccccaaaaacaaaaccctatcccctaaattggtcaacttgacccacttcttctccttctcatcaagcc 9695628  T
Q  132 taaacacatcaatccttaca 151  Q
    | || |||||||| ||||||    
T  9695627 tgaatacatcaatacttaca 9695608  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 149
Target Start/End: Original strand, 9343846 - 9343967
Alignment:
Q  28 caaatctgaagcacatgctgagaacgaataatcactctccaagaacaaaaccaaatctcctaaattagtcaacttcacccactttttctgcttctcatca 127  Q
    |||||| |||||| | || || |||||| | ||| || |||||||||||||   ||| |||||| | || |||||||||||||| |||| | ||||||||    
T  9343846 caaatccgaagcagaagcagaaaacgaacattcattccccaagaacaaaacactatcccctaaagttgttaacttcacccacttcttctccatctcatca 9343945  T
Q  128 agcctaaacacatcaatcctta 149  Q
    ||| |||||||||||| |||||    
T  9343946 agcttaaacacatcaaccctta 9343967  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 143
Target Start/End: Complemental strand, 9486046 - 9485969
Alignment:
Q  66 ccaagaacaaaaccaaatctcctaaattagtcaacttcacccactttttctgcttctcatcaagcctaaacacatcaa 143  Q
    |||| |||||||||| ||| || |||||  ||| || ||||||||| |||| ||||||||||||||||||||||||||    
T  9486046 ccaaaaacaaaaccatatcccccaaatttctcacctccacccacttcttctccttctcatcaagcctaaacacatcaa 9485969  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 149
Target Start/End: Original strand, 9448315 - 9448436
Alignment:
Q  28 caaatctgaagcacatgctgagaacgaataatcactctccaagaacaaaaccaaatctcctaaattagtcaacttcacccactttttctgcttctcatca 127  Q
    |||||| |||||| | || || |||||| | ||| || |||||||||||||   ||| |||||| | || ||||||||||| || |||| |||||||| |    
T  9448315 caaatccgaagcagaagcagaaaacgaacagtcattccccaagaacaaaacactatcccctaaagttgttaacttcacccatttcttctccttctcataa 9448414  T
Q  128 agcctaaacacatcaatcctta 149  Q
    ||| |||||||||||| |||||    
T  9448415 agcttaaacacatcaaccctta 9448436  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 143
Target Start/End: Original strand, 13864243 - 13864320
Alignment:
Q  66 ccaagaacaaaaccaaatctcctaaattagtcaacttcacccactttttctgcttctcatcaagcctaaacacatcaa 143  Q
    |||| |||||||||  ||| || |||||  ||| || |||||||||||||| | ||||||||||||||||||||||||    
T  13864243 ccaaaaacaaaaccctatcccccaaatttctcacctccacccactttttctccctctcatcaagcctaaacacatcaa 13864320  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 151
Target Start/End: Complemental strand, 16011760 - 16011695
Alignment:
Q  86 cctaaattagtcaacttcacccactttttctgcttctcatcaagcctaaacacatcaatccttaca 151  Q
    |||||||||| ||| || ||||| || |||| ||||||||| |||| |||||||||||||||||||    
T  16011760 cctaaattaggcaatttaacccaattcttctccttctcatcgagcccaaacacatcaatccttaca 16011695  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 151
Target Start/End: Original strand, 9756450 - 9756504
Alignment:
Q  97 caacttcacccactttttctgcttctcatcaagcctaaacacatcaatccttaca 151  Q
    |||||| |||||| ||||||  ||||||||||||||| ||||||||||| |||||    
T  9756450 caacttgacccaccttttctctttctcatcaagcctatacacatcaatctttaca 9756504  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 144
Target Start/End: Complemental strand, 9613964 - 9613916
Alignment:
Q  96 tcaacttcacccactttttctgcttctcatcaagcctaaacacatcaat 144  Q
    |||||||||||||||| |||| ||||||||||||| |||| | ||||||    
T  9613964 tcaacttcacccacttcttctccttctcatcaagcttaaaaaaatcaat 9613916  T

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Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 82 - 151
Target Start/End: Complemental strand, 450172 - 450103
Alignment:
Q  82 atctcctaaattagtcaacttcacccactttttctgcttctcatcaagcctaaacacatcaatccttaca 151  Q
    ||||||||||||  ||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  450172 atctcctaaattcctcaacttgacccactttttctccttctcatcaagcctaaacacatcaatccataca 450103  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 66 - 151
Target Start/End: Original strand, 7025795 - 7025880
Alignment:
Q  66 ccaagaacaaaaccaaatctcctaaattagtcaacttcacccactttttctgcttctcatcaagcctaaacacatcaatccttaca 151  Q
    ||||||||||||||  |||||||||| | ||||||||||||||||| |||| |||||||| |||| |||||| |||||||||||||    
T  7025795 ccaagaacaaaaccctatctcctaaactcgtcaacttcacccacttcttctccttctcattaagcttaaacaaatcaatccttaca 7025880  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 66 - 151
Target Start/End: Original strand, 7012859 - 7012944
Alignment:
Q  66 ccaagaacaaaaccaaatctcctaaattagtcaacttcacccactttttctgcttctcatcaagcctaaacacatcaatccttaca 151  Q
    |||||||||||| |  |||||||||| | ||||||||||||||||| |||| |||||||| |||| |||||| |||||| ||||||    
T  7012859 ccaagaacaaaatcctatctcctaaacttgtcaacttcacccacttcttctccttctcattaagcttaaacaaatcaattcttaca 7012944  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 66 - 151
Target Start/End: Original strand, 7029852 - 7029937
Alignment:
Q  66 ccaagaacaaaaccaaatctcctaaattagtcaacttcacccactttttctgcttctcatcaagcctaaacacatcaatccttaca 151  Q
    ||||||||||||||  ||| || ||| | ||||||||||||||||| |||| |||||||| |||| |||||| |||||||||||||    
T  7029852 ccaagaacaaaaccctatccccgaaactcgtcaacttcacccacttcttctccttctcattaagcttaaacaaatcaatccttaca 7029937  T

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Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 66 - 151
Target Start/End: Original strand, 7041535 - 7041620
Alignment:
Q  66 ccaagaacaaaaccaaatctcctaaattagtcaacttcacccactttttctgcttctcatcaagcctaaacacatcaatccttaca 151  Q
    ||||||||||||||  ||| |||||| ||||||||||||||||||| |||| |||||||| |||  |||||| |||||||| ||||    
T  7041535 ccaagaacaaaaccctatcccctaaactagtcaacttcacccacttcttctccttctcattaagtttaaacaaatcaatccataca 7041620  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 151
Target Start/End: Original strand, 9170856 - 9170941
Alignment:
Q  66 ccaagaacaaaaccaaatctcctaaattagtcaacttcacccactttttctgcttctcatcaagcctaaacacatcaatccttaca 151  Q
    ||||||||||||||  ||| |||||| | || || ||||||||||| |||| |||||||| |||| |||||| |||||||||||||    
T  9170856 ccaagaacaaaaccctatcccctaaactcgttaatttcacccacttcttctccttctcattaagcttaaacaaatcaatccttaca 9170941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 151
Target Start/End: Complemental strand, 9159572 - 9159487
Alignment:
Q  66 ccaagaacaaaaccaaatctcctaaattagtcaacttcacccactttttctgcttctcatcaagcctaaacacatcaatccttaca 151  Q
    ||||||||||||||  ||| |||||| | || || ||||||||||| |||| |||||| | |||| |||||| |||||||||||||    
T  9159572 ccaagaacaaaaccctatcccctaaactcgttaatttcacccacttcttctccttctcgttaagcttaaacaaatcaatccttaca 9159487  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 66 - 143
Target Start/End: Original strand, 7046878 - 7046955
Alignment:
Q  66 ccaagaacaaaaccaaatctcctaaattagtcaacttcacccactttttctgcttctcatcaagcctaaacacatcaa 143  Q
    |||||||||||||   ||| |||||| | || |||||||||||||| |||| |||||||| |||| |||||| |||||    
T  7046878 ccaagaacaaaactttatcccctaaactcgttaacttcacccacttcttctccttctcattaagcttaaacaaatcaa 7046955  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 151
Target Start/End: Original strand, 231620 - 231705
Alignment:
Q  66 ccaagaacaaaaccaaatctcctaaattagtcaacttcacccactttttctgcttctcatcaagcctaaacacatcaatccttaca 151  Q
    ||||||||||||| | ||| |||||||||| |||||||||||||||  ||| |||  |||  ||| |||||||||| |||||||||    
T  231620 ccaagaacaaaactatatcccctaaattagccaacttcacccacttcatctcctttgcattgagcttaaacacatctatccttaca 231705  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 66 - 151
Target Start/End: Original strand, 246906 - 246991
Alignment:
Q  66 ccaagaacaaaaccaaatctcctaaattagtcaacttcacccactttttctgcttctcatcaagcctaaacacatcaatccttaca 151  Q
    |||||||||||||   |||||||||||||| |||||||||||| || |||| | |  ||| |||| ||||||  ||||||||||||    
T  246906 ccaagaacaaaactgtatctcctaaattagccaacttcacccatttcttctcccttgcattaagcttaaacaagtcaatccttaca 246991  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 150
Target Start/End: Original strand, 18571170 - 18571234
Alignment:
Q  86 cctaaattagtcaacttcacccactttttctgcttctcatcaagcctaaacacatcaatccttac 150  Q
    |||||| | ||||| ||||||||||| |||| ||||||||||||| |||| | ||||||||||||    
T  18571170 cctaaactcgtcaatttcacccacttcttctccttctcatcaagcttaaagaaatcaatccttac 18571234  T

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