View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7447_high_18 (Length: 242)
Name: NF7447_high_18
Description: NF7447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7447_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 41635595 - 41635820
Alignment:
| Q |
1 |
tgttcttccaattccacaacctgataaatttgtcgggaaattgaagttaaagaaaaatattaagaaagatcacaaaattttgattccactaactagaaaa |
100 |
Q |
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| T |
41635595 |
tgttcttccaattccacaacctgatatatttgtcgggaaattgaagttaaagaaaaatattaagagagatcacaaaattttgattccactaactagaaaa |
41635694 |
T |
|
| Q |
101 |
cgtaaactttaacatacccttttttccagttcatcagttctctgtctagcacttcttgagattgacctttcggaaagcagccttgcccgtaggaattcaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
41635695 |
cgtaaactttaacatacccttttttccagttcatcagttctctgtctagcacttcttgagattgacctttcggaaagcaaccttgcccgtaggaattcaa |
41635794 |
T |
|
| Q |
201 |
tagtcattgcagtggagtcctccatg |
226 |
Q |
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||||||||||||||||||| |||||| |
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| T |
41635795 |
tagtcattgcagtggagtcttccatg |
41635820 |
T |
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