View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7447_high_21 (Length: 215)
Name: NF7447_high_21
Description: NF7447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7447_high_21 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 19 - 197
Target Start/End: Complemental strand, 21426804 - 21426626
Alignment:
| Q |
19 |
ccatatcttaactgtaaccctatttgcaacccatacaccgataagcccgttaagtaccaacacatcaaattctaaacgagaagcnnnnnnnntattataa |
118 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
21426804 |
ccatatcttaattgtaaccctatttgcaacccatacaccgataagcccgttaagtaccaacacatcaaattctaaacgagaagcataaagaatattataa |
21426705 |
T |
|
| Q |
119 |
tcatctggaagagctatctctgacattgttgtttcctttaaattaagggcaataataacatcccggttggtctcagaat |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
21426704 |
tcatctggaagagctatctctgacattgttgtttcctttaaatcaagggcaataataacatcccggttggtctcagaat |
21426626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 19 - 182
Target Start/End: Original strand, 30130952 - 30131115
Alignment:
| Q |
19 |
ccatatcttaactgtaaccctatttgcaacccatacaccgataagcccgttaagtaccaacacatcaaattctaaacgagaagcnnnnnnnntattataa |
118 |
Q |
| |
|
|||||||||||||||||| || || ||||||||||| || || || ||||||||||| | |||||| |||| | ||||| | ||| | || |
|
|
| T |
30130952 |
ccatatcttaactgtaacaacatctgaaacccatacactaattagtccattaagtaccaatatatcaaaatctagaggagaaacataccaaatatcaaaa |
30131051 |
T |
|
| Q |
119 |
tcatctggaagagctatctctgacattgttgtttcctttaaattaagggcaataataacatccc |
182 |
Q |
| |
|
|||| |||||||| ||||||||||||||| ||||||||||||||| ||| ||||||||||||| |
|
|
| T |
30131052 |
tcatttggaagagttatctctgacattgtcatttcctttaaattaaaggctataataacatccc |
30131115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 117 - 178
Target Start/End: Original strand, 28180977 - 28181038
Alignment:
| Q |
117 |
aatcatctggaagagctatctctgacattgttgtttcctttaaattaagggcaataataaca |
178 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||||||||| || ||||||||||||| |
|
|
| T |
28180977 |
aatcatctggaagagctatatctgacattgtcatttcctttaaatcaaaggcaataataaca |
28181038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 193
Target Start/End: Original strand, 30125096 - 30125172
Alignment:
| Q |
117 |
aatcatctggaagagctatctctgacattgttgtttcctttaaattaagggcaataataacatcccggttggtctca |
193 |
Q |
| |
|
|||||| |||||||||||| ||||||||||| | ||||||||||| || ||||| |||||||||| |||||||||| |
|
|
| T |
30125096 |
aatcatttggaagagctatttctgacattgtcgcttcctttaaatcaaaggcaacaataacatccttgttggtctca |
30125172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 181
Target Start/End: Complemental strand, 30165785 - 30165721
Alignment:
| Q |
117 |
aatcatctggaagagctatctctgacattgttgtttcctttaaattaagggcaataataacatcc |
181 |
Q |
| |
|
|||||| ||||||||||||||||| |||||| | ||||||||||| || |||||||||||||||| |
|
|
| T |
30165785 |
aatcatttggaagagctatctctgccattgtcgcttcctttaaatcaaaggcaataataacatcc |
30165721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 193
Target Start/End: Original strand, 30120061 - 30120126
Alignment:
| Q |
128 |
agagctatctctgacattgttgtttcctttaaattaagggcaataataacatcccggttggtctca |
193 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||| || |||||||||||||| | |||||||||| |
|
|
| T |
30120061 |
agagctatctctgatattgtcgtttcctttaaatcaaaggcaataataacattcatgttggtctca |
30120126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 117 - 180
Target Start/End: Original strand, 43164820 - 43164883
Alignment:
| Q |
117 |
aatcatctggaagagctatctctgacattgttgtttcctttaaattaagggcaataataacatc |
180 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||||||||| | ||||||||||||||| |
|
|
| T |
43164820 |
aatcatctggaagagcaatctctgacattgtcttttcctttaaatcataggcaataataacatc |
43164883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 120 - 181
Target Start/End: Original strand, 41311145 - 41311206
Alignment:
| Q |
120 |
catctggaagagctatctctgacattgttgtttcctttaaattaagggcaataataacatcc |
181 |
Q |
| |
|
||||||| ||||| ||||||||| ||| |||||||||||| || |||||||||||||||| |
|
|
| T |
41311145 |
catctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacatcc |
41311206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University