View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7447_high_4 (Length: 473)

Name: NF7447_high_4
Description: NF7447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7447_high_4
NF7447_high_4
[»] chr7 (5 HSPs)
chr7 (83-248)||(45632061-45632225)
chr7 (83-248)||(26643570-26643738)
chr7 (337-387)||(45632314-45632364)
chr7 (20-71)||(45631970-45632021)
chr7 (10-62)||(26643474-26643526)
[»] chr6 (3 HSPs)
chr6 (83-248)||(7368384-7368549)
chr6 (337-387)||(7368636-7368686)
chr6 (35-71)||(7368308-7368344)
[»] chr2 (3 HSPs)
chr2 (83-248)||(39905531-39905697)
chr2 (20-71)||(39905441-39905491)
chr2 (337-373)||(39905787-39905823)
[»] chr3 (4 HSPs)
chr3 (83-180)||(53161067-53161163)
chr3 (176-246)||(53159747-53159817)
chr3 (337-387)||(53159611-53159661)
chr3 (4-71)||(53161203-53161270)
[»] chr4 (2 HSPs)
chr4 (83-248)||(51032644-51032816)
chr4 (10-63)||(51032864-51032917)


Alignment Details
Target: chr7 (Bit Score: 130; Significance: 4e-67; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 83 - 248
Target Start/End: Original strand, 45632061 - 45632225
Alignment:
Q  83 tttctgtttctattcttcatcaacaacaaccatgagtactattgctgaaaaaggaagaggccgtattttgtcactaggacttcattccagttgctacaac 182  Q
    |||||| || ||||||||||||||||||||| |||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||    
T  45632061 tttctgattttattcttcatcaacaacaaccgtgagtactattgctgaaaaatgaagagac-gtattttgtcactaggacttcattccagttgctacaac 45632159  T
Q  183 gatccataaccggtaacaaataaatatggtgcattttttctaatgttttctcttattcatactgcc 248  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  45632160 gatccataaccggtaacaattcaatatggtgcattttttctaatgttttctcttattcatactgcc 45632225  T

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Target: chr7; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 83 - 248
Target Start/End: Original strand, 26643570 - 26643738
Alignment:
Q  83 tttctgtttctattcttcat---caacaacaaccatgagtactattgctgaaaaaggaagaggccgtattttgtcactaggacttcattccagttgctac 179  Q
    ||||||||| ||||||||||   ||||||||| | ||||||||||||||||||| ||||||| |||| ||||| ||||| |||||||| ||||| ||||     
T  26643570 tttctgtttttattcttcatcatcaacaacaatcgtgagtactattgctgaaaagggaagagaccgtgttttgccactacgacttcataccagtcgctaa 26643669  T
Q  180 aacgatccataaccggtaacaaataaatatggtgcattttttctaatgttttctcttattcatactgcc 248  Q
    | ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  26643670 agcgatccataaccggtaataactaaatatggtgcattttttctaatgttttctcttattcatactgcc 26643738  T

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Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 337 - 387
Target Start/End: Original strand, 45632314 - 45632364
Alignment:
Q  337 ataactagagtgaccgtggcagttaaggtgtcgccggtttgacattatggg 387  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  45632314 ataactagagtgaccgtggcagttaaagtgtcgccggtttgacattatggg 45632364  T

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Target: chr7; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 45631970 - 45632021
Alignment:
Q  20 aaatcgaaggttgttacttgaaatctaatttcttttctatgatatctcttct 71  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  45631970 aaatcaaaggttgtgacttgaaatctaatttcttttctatgatatctcttct 45632021  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 10 - 62
Target Start/End: Original strand, 26643474 - 26643526
Alignment:
Q  10 ggcatggtgcaaatcgaaggttgttacttgaaatctaatttcttttctatgat 62  Q
    |||||| | |||||| |||||||| ||||| ||||||| ||||||||||||||    
T  26643474 ggcatgtttcaaatcaaaggttgtgacttgcaatctaacttcttttctatgat 26643526  T

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Target: chr6 (Bit Score: 119; Significance: 1e-60; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 83 - 248
Target Start/End: Original strand, 7368384 - 7368549
Alignment:
Q  83 tttctgtttctattcttcatcaacaacaaccatgagtactattgctgaaaaaggaagaggccgtattttgtcactaggacttcattccagttgctacaac 182  Q
    ||||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  7368384 tttctgtttttatttttcatcaacaacaaccgtgagtactattgctgaaaaaggaagaggccgtattt-gtcactaggacttcattccaattgctacaac 7368482  T
Q  183 gatccataaccggtaacaaataaatatggtgca-ttttttctaatgttttctcttattcatactgcc 248  Q
    ||| ||||||||||||||| | ||||||||||| |||||| ||||||||||||||||||||||||||    
T  7368483 gatgcataaccggtaacaattcaatatggtgcatttttttataatgttttctcttattcatactgcc 7368549  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 337 - 387
Target Start/End: Original strand, 7368636 - 7368686
Alignment:
Q  337 ataactagagtgaccgtggcagttaaggtgtcgccggtttgacattatggg 387  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  7368636 ataactatagtgaccgtggcagttaaggtgtcgccggtttgacattatggg 7368686  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 35 - 71
Target Start/End: Original strand, 7368308 - 7368344
Alignment:
Q  35 acttgaaatctaatttcttttctatgatatctcttct 71  Q
    |||||||||||||||||||||||||||||||||||||    
T  7368308 acttgaaatctaatttcttttctatgatatctcttct 7368344  T

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Target: chr2 (Bit Score: 99; Significance: 1e-48; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 83 - 248
Target Start/End: Original strand, 39905531 - 39905697
Alignment:
Q  83 tttctgtttctattcttcatcaacaacaaccatgagtactattgctgaaaaaggaagaggccgtattttgtcactaggacttcattccagttgctacaac 182  Q
    ||||||||| ||||||||| ||||||||||  ||||||| |   ||||||| |||||||||||| |||||||||||||||||||| |||||||||| ||     
T  39905531 tttctgtttttattcttcaccaacaacaacggtgagtaccacaactgaaaagggaagaggccgtgttttgtcactaggacttcataccagttgctaaaaa 39905630  T
Q  183 gatccataaccggtaacaaataaatatggtgca-ttttttctaatgttttctcttattcatactgcc 248  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||    
T  39905631 gatccataaccggtaacaattaaatatggtgcatttttttctaatgttttcttttattcatactgcc 39905697  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 39905441 - 39905491
Alignment:
Q  20 aaatcgaaggttgttacttgaaatctaatttcttttctatgatatctcttct 71  Q
    ||||| |||||||| ||||||||||||||||| ||||||||||| |||||||    
T  39905441 aaatcaaaggttgtgacttgaaatctaatttc-tttctatgatacctcttct 39905491  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 337 - 373
Target Start/End: Original strand, 39905787 - 39905823
Alignment:
Q  337 ataactagagtgaccgtggcagttaaggtgtcgccgg 373  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  39905787 ataactggagtgaccgtgacagttaaggtgtcgccgg 39905823  T

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Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 83 - 180
Target Start/End: Complemental strand, 53161163 - 53161067
Alignment:
Q  83 tttctgtttctattcttcatcaacaacaaccatgagtactattgctgaaaaaggaagaggccgtattttgtcactaggacttcattccagttgctaca 180  Q
    ||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||    
T  53161163 tttctgtttttattcttcatcaacaacaaccgtgagtattattgctgaaaaaggaaga-gacgtattttgtcactaggacttcattcaagttgctaca 53161067  T

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Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 176 - 246
Target Start/End: Complemental strand, 53159817 - 53159747
Alignment:
Q  176 ctacaacgatccataaccggtaacaaataaatatggtgcattttttctaatgttttctcttattcatactg 246  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  53159817 ctacaacgatccataaccggtaacaattcaatatggtgcattttttctaatgttttctcttattcatactg 53159747  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 337 - 387
Target Start/End: Complemental strand, 53159661 - 53159611
Alignment:
Q  337 ataactagagtgaccgtggcagttaaggtgtcgccggtttgacattatggg 387  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  53159661 ataactagagtgaccgtggcagttaaagtgtcgccggtttgacattatggg 53159611  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 4 - 71
Target Start/End: Complemental strand, 53161270 - 53161203
Alignment:
Q  4 ttctagggcatggtgcaaatcgaaggttgttacttgaaatctaatttcttttctatgatatctcttct 71  Q
    ||||| |||||| | |||||| |||| ||| |||||||||||||||||||||||||||||||||||||    
T  53161270 ttctatggcatgtttcaaatcaaaggctgtgacttgaaatctaatttcttttctatgatatctcttct 53161203  T

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Target: chr4 (Bit Score: 69; Significance: 9e-31; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 83 - 248
Target Start/End: Complemental strand, 51032816 - 51032644
Alignment:
Q  83 tttctgtttctattcttcatcaacaacaaccatg---agtactattgctgaaaaaggaagaggccgtattttgtcactaggacttcattccagttgctac 179  Q
    ||||||||| |||||||||||| ||||||  |||   |||| |||||||||||| |||||||||||| ||||| |||||  ||||||| || || ||||     
T  51032816 tttctgtttttattcttcatcatcaacaaaaatggtgagtattattgctgaaaagggaagaggccgtgttttgccactacaacttcataccggtcgctaa 51032717  T
Q  180 aacgatccataacc---ggtaacaaataaatatggtgca-ttttttctaatgttttctcttattcatactgcc 248  Q
    ||||||||||||||   ||||| || ||||||||||||| ||||||||||||||||||| |||||||||||||    
T  51032716 aacgatccataaccggtggtaataattaaatatggtgcatttttttctaatgttttctcctattcatactgcc 51032644  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 63
Target Start/End: Complemental strand, 51032917 - 51032864
Alignment:
Q  10 ggcatggtgcaaatcgaaggttgttacttgaaatctaatttcttttctatgata 63  Q
    |||||| | |||||| |||||||| ||||| ||||||| |||||||||||||||    
T  51032917 ggcatgtttcaaatcaaaggttgtgacttgcaatctaacttcttttctatgata 51032864  T

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