View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7447_high_7 (Length: 376)
Name: NF7447_high_7
Description: NF7447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7447_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 16 - 360
Target Start/End: Complemental strand, 37212149 - 37211805
Alignment:
| Q |
16 |
ataagatacagtaacaagagacaagagttatttcatagcctagttggttaaacagtaacaagcaattattgtagacatgttacttactattcataccaga |
115 |
Q |
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| T |
37212149 |
ataagatacagtaacaagagacaagagttatttcatagcctagttggttaaacagtaacaagcaattattgtagacatgttacttactattcataccaga |
37212050 |
T |
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| Q |
116 |
agcagacattgcaattttatatatcaatctcgatgcaaaattattgttgataattgtattttttgtctgccaataagaagacagagatttgtaagttcca |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
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| T |
37212049 |
agcagacattgcaattttatatatcaatctcgatgcaaaattattgttgataattgtattttttgtctgccaataagaatacagagattcgtaagttcca |
37211950 |
T |
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| Q |
216 |
aaatgtgttaatcacatgcaattttaacatgaaacctccaaaacatgttagagtaatttctggaccatgcatattaacaactcaaaattcaaatatcaag |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37211949 |
aaatgtgttaatcacatgcaattttaacatgaaacctccaaaacatgttagagtaatttctggaccatgcatattaacaactcaaaattcaaatatcaag |
37211850 |
T |
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| Q |
316 |
cctattgggaataatattcatctgtgacataaataagttcattct |
360 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
37211849 |
ccaattgggaataatattcatctgtgacataaataagttcattct |
37211805 |
T |
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