View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7447_high_8 (Length: 362)
Name: NF7447_high_8
Description: NF7447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7447_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 102; Significance: 1e-50; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 13 - 129
Target Start/End: Complemental strand, 43006913 - 43006794
Alignment:
| Q |
13 |
aatattcaaaagatcatagaactgcatgcaggagtcatgaaaaataaattaaattgaacataaaggaaatgcacatc---tattatatattatctactta |
109 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
43006913 |
aatattcaaaagatcatagaactgcttgcaggagtcatgaaaaataaattaaattgaacataaaggaaatgcacatcttttattatatattatctactta |
43006814 |
T |
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| Q |
110 |
aatttaattcatttatttat |
129 |
Q |
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|||||||||||||||||||| |
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| T |
43006813 |
aatttaattcatttatttat |
43006794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 285 - 346
Target Start/End: Complemental strand, 43006632 - 43006571
Alignment:
| Q |
285 |
ctatcccctaaatatctatgaaacaaaaagccaccttgaagatattagcaacaatatgtttt |
346 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43006632 |
ctatcccctaaatatctatgaaacaaaaagccaccttgaagatattagcaacaatatgtttt |
43006571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 42999247 - 42999200
Alignment:
| Q |
13 |
aatattcaaaagatcatagaactgcatgcaggagtcatgaaaaataaa |
60 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
42999247 |
aatattcaaaagatcatagaactgcatgtaggagtcatgaaaaataaa |
42999200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 43006695 - 43006648
Alignment:
| Q |
224 |
gtggaaaaattgttatataacaac---cctatcctttatacctgaaag |
268 |
Q |
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| T |
43006695 |
gtggaaaaattgttatataacaacaaccctatcctttatacctgaaag |
43006648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 339
Target Start/End: Complemental strand, 42998292 - 42998238
Alignment:
| Q |
285 |
ctatcccctaaatatctatgaaacaaaaagccaccttgaagatattagcaacaat |
339 |
Q |
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|||||| | ||||||||||| |||||| | ||||||||||| ||||||||||||| |
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| T |
42998292 |
ctatcctccaaatatctatgtaacaaagaaccaccttgaagttattagcaacaat |
42998238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 285 - 346
Target Start/End: Complemental strand, 19315288 - 19315227
Alignment:
| Q |
285 |
ctatcccctaaatatctatgaaacaaaaagccaccttgaagatattagcaacaatatgtttt |
346 |
Q |
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|||||| |||||||| |||| |||||||||||||||||||||||||||||| ||| |||||| |
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| T |
19315288 |
ctatcctctaaatatttatgtaacaaaaagccaccttgaagatattagcaaaaatttgtttt |
19315227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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