View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7447_low_1 (Length: 1398)
Name: NF7447_low_1
Description: NF7447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7447_low_1 |
 | |
|
| [»] scaffold0014 (2 HSPs) |
| | |
|
| [»] scaffold0013 (2 HSPs) |
| | |
|
| [»] scaffold0321 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 919; Significance: 0; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 919; E-Value: 0
Query Start/End: Original strand, 212 - 1242
Target Start/End: Complemental strand, 11231928 - 11230899
Alignment:
| Q |
212 |
tgatatctcttggaaataaataagcaaactatgcatagtcaaatttaataatggaatcaaaattttcagctcttgaatttgcaggtcaagaagcatgtta |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
11231928 |
tgatatctcttggaaataaataagcaaactatgcatagtcaaatttaataatggaatcaaaattctcagctcttgaatttgcaggtcaagaagcatgtta |
11231829 |
T |
|
| Q |
312 |
aacttcaccatatccatggtgaaagtagaagaaatgcagaagcttaacaaggaagaaagagagaaatcgagagaaaattctagattcattgaattgatat |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11231828 |
aacttcaccatatccatggtgaaagtagaagaaatgcagaagcttaacaaggaagaaagagagaaatcgagagaaaattctagattcattgaattgatat |
11231729 |
T |
|
| Q |
412 |
gaaaacggttaattttcatgcaatgattatcaaattgagcaaaacaagactcacaccaaaatttactttcacaattctaaaactatgttaaattattaat |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11231728 |
gaaaacggttaattttcatgcaatgattatcaaattgagcaaaacaagactcacaccaaaatttactttcacaattctaaaactatgttaaattattaat |
11231629 |
T |
|
| Q |
512 |
caataatgagaagataatgaaactcaatttttgtattcagaatccatgcaattcaattccaaacacttccacattctcatatcgcaacgagttatccatt |
611 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11231628 |
caataatgagaagataatgaaactcaatttttgtattcagaatccatgcaattcaatt-caaacacttccacattctcatatcgcaacgagttatccatt |
11231530 |
T |
|
| Q |
612 |
tctgtgtatgattctcaattttatgataatatttcacttgcatgttannnnnnnattgtactctttgtccatgatgcatgttgttaactctccgaagtaa |
711 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
11231529 |
tctgtgtatgattctcaattttatgataatatttcacttgcatgttatttttttattgtactctttgtccatgatgcatgctgttaactctccgaagtta |
11231430 |
T |
|
| Q |
712 |
tgctcaattcaactaactgatatttacgnnnnnnnnngccttcgtttttggtatcaacagtcacaaatatacaacagtcgacaacaactttggtttcctt |
811 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
11231429 |
tgctcaattcaactaactgatatttacgtttttttttgccttcgtttttggtatcaacagtcacaaatatacgacagtcgacaacaactttggtttcctt |
11231330 |
T |
|
| Q |
812 |
cagctcttggcattcatgttcctcaacagattaggctagcacagcggatcacagacccggataccatggctagccatttattcagtgtcacattgtggtt |
911 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
11231329 |
cagctcttggcattcatgttcctcaacagattaggctagcacagtggatcacagactcggataccatggctagccatttattcggtgttacattgtggtt |
11231230 |
T |
|
| Q |
912 |
tatttggaagggttggaaccaattgatttttaacaaaacacctttctgttgtgtccatcgctatggaggaatccagattttctgcagagttttttaacgc |
1011 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
11231229 |
tatttggaagggttggaaccaattgatttttaacaaaacacctttctggtgtgtccatcgctatggaggaatccagattttccgcagagttttttaacgc |
11231130 |
T |
|
| Q |
1012 |
taatccctcaaagctgaagccaaccatagttttagagccagaaatcttggagcagccgaacattggcacgacaaggatcaaagtagatgaaggatgtttt |
1111 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
11231129 |
taatccctcaaagccgaagccaaccatagtttcagagccagaaatcttggagcagccgaacattggcacaacaaggatcaaagtagatgaaggatgtttt |
11231030 |
T |
|
| Q |
1112 |
caaaatggcacaactggttacgttgcttagcacgggatcacactggtttgttgtaatggtgcattaaccaataatttcacattagtcttagaccaacata |
1211 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11231029 |
caaaatggcacaactggttaggttgcttagcacgggatcacactggtttgttgtaatggtgcattaaccaataatttcacattagtcttagaccaacata |
11230930 |
T |
|
| Q |
1212 |
caatgtatgtttgtgtgattgttgctgttat |
1242 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
11230929 |
caatgtatgtttgtgtgattgttgctgttat |
11230899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 15 - 211
Target Start/End: Complemental strand, 11232501 - 11232305
Alignment:
| Q |
15 |
agtgtgtgtattcataatctcaatggcggtcatttaaacgagcaattattttttctaatctatccaaatgttgttgtctcgatatcatgtgtttctaata |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11232501 |
agtgtgtgtattcataatctcaatggcggtcatttaaacgagcaattattttttctaatctatccaaatgttgttgtctcgatatcatgtgtttctaata |
11232402 |
T |
|
| Q |
115 |
gttgatcttagaaggattgaatagtataaattggatctcaaataaagacgaggtaggtttcgttgtgaagtacttatttatctcatgatgatgtgat |
211 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11232401 |
gttgatcttagaaggatttaatagtataaattggatctcaaatagagacgaggtaggtttcgttgtgaagtacttatttatctcatgatgatgtgat |
11232305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 141; E-Value: 3e-73
Query Start/End: Original strand, 1239 - 1387
Target Start/End: Complemental strand, 11230490 - 11230342
Alignment:
| Q |
1239 |
ttattcacgcaccaagtccaagtttcgaaccaagcatgttggaaaagcattgtccatttatttttctgataatttcaacaaaacaaggtcatgtatggat |
1338 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11230490 |
ttattcacgcaccaagtccaagtttcgaaccaagcatgttggaaaagcattatccatttatttttctgataatttcaacaaaacaaggtcatgtatggat |
11230391 |
T |
|
| Q |
1339 |
tcctatatccaacggtggttgcttaggagtgattccccgtctctgctac |
1387 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
11230390 |
tcctatatccaacgatggttgcttaggagtgattccccgtctctgctac |
11230342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 123; E-Value: 2e-62
Query Start/End: Original strand, 1036 - 1242
Target Start/End: Complemental strand, 11243292 - 11243086
Alignment:
| Q |
1036 |
catagttttagagccagaaatcttggagcagccgaacattggcacgacaaggatcaaagtagatgaaggatgttttcaaaatggcacaactggttacgtt |
1135 |
Q |
| |
|
|||||||| |||||||||||||| |||| |||||||| |||||||| || ||| || |||||| |||||||||||||||||||||||||||||| ||| |
|
|
| T |
11243292 |
catagtttcagagccagaaatctgggagtagccgaacgttggcacggcagagattaacatagatgcaggatgttttcaaaatggcacaactggttaggtt |
11243193 |
T |
|
| Q |
1136 |
gcttagcacgggatcacactggtttgttgtaatggtgcattaaccaataatttcacattagtcttagaccaacatacaatgtatgtttgtgtgattgttg |
1235 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |||| ||||||| |||| | ||||||||| ||||||||||||||||||| |||||||||||| || |
|
|
| T |
11243192 |
gcttagcacgggatcacactgttttgttgtaatgctgcagtaaccaaaaattccgcattagtctcagaccaacatacaatgtatctttgtgtgattggtg |
11243093 |
T |
|
| Q |
1236 |
ctgttat |
1242 |
Q |
| |
|
||||||| |
|
|
| T |
11243092 |
ctgttat |
11243086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 71; E-Value: 2e-31
Query Start/End: Original strand, 305 - 422
Target Start/End: Original strand, 31197330 - 31197447
Alignment:
| Q |
305 |
catgttaaacttcaccatatccatggtgaaagtagaagaaatgcagaagcttaacaaggaagaaagagag-aaatcgagagaaaattctagattcattga |
403 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||| |||| |||| |||| ||||||||||||| |
|
|
| T |
31197330 |
catgttaaacttcaccatatccatggtggaagttgaagaaatgcagaagcttaacaaagaagaaagagagaaaattgagataaaa-gctagattcattga |
31197428 |
T |
|
| Q |
404 |
attgatatgaaaacggtta |
422 |
Q |
| |
|
||||| | ||||||||||| |
|
|
| T |
31197429 |
attgagaagaaaacggtta |
31197447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 69; E-Value: 3e-30
Query Start/End: Original strand, 307 - 422
Target Start/End: Original strand, 31192621 - 31192736
Alignment:
| Q |
307 |
tgttaaacttcaccatatccatggtgaaagtagaagaaatgcagaagcttaacaaggaagaaagagag-aaatcgagagaaaattctagattcattgaat |
405 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||| |||| |||| |||| ||||||||||||||| |
|
|
| T |
31192621 |
tgttaaacttcaccatatccatggtggaagttgaagaaatgcagaagcttaacaaagaagaaagagagaaaattgagataaaa-gctagattcattgaat |
31192719 |
T |
|
| Q |
406 |
tgatatgaaaacggtta |
422 |
Q |
| |
|
||| | ||||||||||| |
|
|
| T |
31192720 |
tgagaagaaaacggtta |
31192736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 69; E-Value: 3e-30
Query Start/End: Original strand, 307 - 422
Target Start/End: Complemental strand, 52775692 - 52775577
Alignment:
| Q |
307 |
tgttaaacttcaccatatccatggtgaaagtagaagaaatgcagaagcttaacaaggaagaaagagag-aaatcgagagaaaattctagattcattgaat |
405 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||| |||| |||| |||| ||||||||||||||| |
|
|
| T |
52775692 |
tgttaaacttcaccatatccatggtggaagttgaagaaatgcagaagcttaacaaagaagaaagagagaaaattgagataaaa-gctagattcattgaat |
52775594 |
T |
|
| Q |
406 |
tgatatgaaaacggtta |
422 |
Q |
| |
|
||| | ||||||||||| |
|
|
| T |
52775593 |
tgagaagaaaacggtta |
52775577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 67; E-Value: 4e-29
Query Start/End: Original strand, 305 - 422
Target Start/End: Complemental strand, 52770986 - 52770869
Alignment:
| Q |
305 |
catgttaaacttcaccatatccatggtgaaagtagaagaaatgcagaagcttaacaaggaagaaagagag-aaatcgagagaaaattctagattcattga |
403 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||| |||| |||| |||| ||||||||||||| |
|
|
| T |
52770986 |
catgttaaacttcaccatatccatggtggaagttgaagaaatgcagaagcttaacaaagaagaaagagagaaaattgagataaaa-gctagattcattga |
52770888 |
T |
|
| Q |
404 |
attgatatgaaaacggtta |
422 |
Q |
| |
|
||| | | ||||||||||| |
|
|
| T |
52770887 |
atttagaagaaaacggtta |
52770869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 58; E-Value: 1e-23
Query Start/End: Original strand, 601 - 736
Target Start/End: Complemental strand, 11243523 - 11243389
Alignment:
| Q |
601 |
agttatccatttctgtgtatgattctcaattttatgataatatttcacttgcatgttannnnnnnattgtactctttgtccatgatgcatgttgttaact |
700 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| | ||| || ||||||||||||| | ||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
11243523 |
agttatccagttctgtgtatgattctcaattttctaatactaattcacttgcatgtgatttttt-attgtactctttgtcgatgatgcatgtcgttaact |
11243425 |
T |
|
| Q |
701 |
ctccgaagtaatgctcaattcaactaactgatattt |
736 |
Q |
| |
|
||| |||| |||||||||| || |||||||||||| |
|
|
| T |
11243424 |
ctcataagttatgctcaatttaattaactgatattt |
11243389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 47; E-Value: 4e-17
Query Start/End: Original strand, 497 - 547
Target Start/End: Complemental strand, 11243714 - 11243664
Alignment:
| Q |
497 |
tgttaaattattaatcaataatgagaagataatgaaactcaatttttgtat |
547 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
11243714 |
tgttaaattattaatcaataatgagaagataatgaaactcactttttgtat |
11243664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 547 - 588
Target Start/End: Complemental strand, 11243635 - 11243595
Alignment:
| Q |
547 |
ttcagaatccatgcaattcaattccaaacacttccacattct |
588 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
11243635 |
ttcagaatccatacaattcaatt-caaacacttccacattct |
11243595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 129; Significance: 4e-66; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 129; E-Value: 4e-66
Query Start/End: Original strand, 82 - 307
Target Start/End: Original strand, 17513962 - 17514182
Alignment:
| Q |
82 |
atgttgttgtctcgatatcatgtgtttctaatagttgatcttagaaggattgaatagtataaattggatctcaaataaagacgaggtaggtttcgttgtg |
181 |
Q |
| |
|
||||||||||||||||||||||| ||| || |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| | |||| |
|
|
| T |
17513962 |
atgttgttgtctcgatatcatgttcttcaaagtgttgatcttagaaggattgaatagcataaattggatctcaaataaagacaaggtaggttccattgta |
17514061 |
T |
|
| Q |
182 |
aagtacttatttatctcatgatgatgtgattgatatctcttggaaataaataagcaaactatgcatagtcaaatttaataatggaatcaaaattttcagc |
281 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||| | ||| |
|
|
| T |
17514062 |
aagtacttatttatttcatgatgatgtgac----atctcttcgaaataaataagcaaattatgcatagtcaaatttaa-aatggaatcaaaattgttagc |
17514156 |
T |
|
| Q |
282 |
tcttgaatttgcaggtcaagaagcat |
307 |
Q |
| |
|
| || ||||||||||||||||||||| |
|
|
| T |
17514157 |
tattaaatttgcaggtcaagaagcat |
17514182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 2e-22
Query Start/End: Original strand, 15 - 138
Target Start/End: Original strand, 17513414 - 17513542
Alignment:
| Q |
15 |
agtgtgtgtattcataatctcaatggcggtcatttaaacgagcaattatttttt--ctaatctatccaaatg---ttgttgtctcgatatcatgtgtttc |
109 |
Q |
| |
|
|||||||| ||||||||| |||| || | ||||||||| | |||||||||||| ||||||||| |||||| |||||||||||||||||||| ||| |
|
|
| T |
17513414 |
agtgtgtgaattcataatttcaacggtgatcatttaaataatcaattattttttttctaatctattcaaatgatgttgttgtctcgatatcatgttcttc |
17513513 |
T |
|
| Q |
110 |
taatagttgatcttagaaggattgaatag |
138 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
17513514 |
aaatagttgatcttagaaggattgaatag |
17513542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000009
Query Start/End: Original strand, 63 - 132
Target Start/End: Original strand, 17513609 - 17513681
Alignment:
| Q |
63 |
ttttttctaatctatccaaatg---ttgttgtctcgatatcatgtgtttctaatagttgatcttagaaggatt |
132 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
17513609 |
ttttttctaatctattcaaatgatgttgttgtctcgatatcatgttcttcaaatagttgatcttagaaggatt |
17513681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 103; Significance: 1e-50; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 15 - 196
Target Start/End: Complemental strand, 1092653 - 1092469
Alignment:
| Q |
15 |
agtgtgtgtattcataatctcaatggcggtcatttaaacgagcaattattttttctaatctatccaaatg---ttgttgtctcgatatcatgtgtttcta |
111 |
Q |
| |
|
||||| || |||||||||||||| | | ||||||||| || ||||||||||||||||||||| |||||| ||||||||| |||||||||| ||||| |
|
|
| T |
1092653 |
agtgtatgaattcataatctcaacgatgatcatttaaatgatcaattattttttctaatctattcaaatgatgttgttgtctggatatcatgttcttcta |
1092554 |
T |
|
| Q |
112 |
atagttgatcttagaaggattgaatagtataaattggatctcaaataaagacgaggtaggtttcgttgtgaagtacttatttatc |
196 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| | |||| ||||||||||||||| |
|
|
| T |
1092553 |
atagttgatcttagaagaattgaatagtgtaaattggatctcaaataaagacgaggtaggttccattgtcaagtacttatttatc |
1092469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 4e-29
Query Start/End: Original strand, 305 - 422
Target Start/End: Complemental strand, 26129193 - 26129076
Alignment:
| Q |
305 |
catgttaaacttcaccatatccatggtgaaagtagaagaaatgcagaagcttaacaaggaagaaagagag-aaatcgagagaaaattctagattcattga |
403 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||| |||| |||| |||| |||||||||| || |
|
|
| T |
26129193 |
catgttaaacttcaccatatccatggtgaaagttgaagaaatgcagaagcttaacaaagaagaaggagagaaaattgagataaaa-gctagattcataga |
26129095 |
T |
|
| Q |
404 |
attgatatgaaaacggtta |
422 |
Q |
| |
|
||||| | ||||||||||| |
|
|
| T |
26129094 |
attgagaagaaaacggtta |
26129076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 225 - 307
Target Start/End: Complemental strand, 1092082 - 1092000
Alignment:
| Q |
225 |
aaataaataagcaaactatgcatagtcaaatttaataatggaatcaaaattttcagctcttgaatttgcaggtcaagaagcat |
307 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |||||||||||||||| ||| | |||||||||||||||||||||||| |
|
|
| T |
1092082 |
aaataaataagcgaactatgcatagtcaaatttactaatggaatcaaaattctcaccctttgaatttgcaggtcaagaagcat |
1092000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 309 - 413
Target Start/End: Original strand, 29155892 - 29155996
Alignment:
| Q |
309 |
ttaaacttcaccatatccatggtgaaagtaga-agaaatgcagaagcttaacaaggaagaaagagagaaatcgagagaaaattctagattcattgaattg |
407 |
Q |
| |
|
|||||||||||| ||||||||||| || |||| | |||||||||| ||||| | ||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
29155892 |
ttaaacttcaccgtatccatggtggaattagagaaaaatgcagaaacttaaggaagaagaaagagagaaagatagagaaaa-tctagattcattgaattg |
29155990 |
T |
|
| Q |
408 |
atatga |
413 |
Q |
| |
|
| |||| |
|
|
| T |
29155991 |
aaatga |
29155996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 307 - 422
Target Start/End: Complemental strand, 26136106 - 26135990
Alignment:
| Q |
307 |
tgttaaacttcaccatat---ccatggtgaaagtagaagaaatgcagaagcttaacaaggaagaaagagag-aaatcgagagaaaattctagattcattg |
402 |
Q |
| |
|
|||||||||||||| ||| |||||||||| || ||||||||||||||||||| ||| |||||||||||| |||| |||| |||| |||||||||| | |
|
|
| T |
26136106 |
tgttaaacttcaccctattttccatggtgaa-gt-gaagaaatgcagaagcttaccaaagaagaaagagagaaaattgagataaaa-gctagattcatag |
26136010 |
T |
|
| Q |
403 |
aattgatatgaaaacggtta |
422 |
Q |
| |
|
|||||| | ||||||||||| |
|
|
| T |
26136009 |
aattgagaagaaaacggtta |
26135990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 71; Significance: 2e-31; HSPs: 2)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 71; E-Value: 2e-31
Query Start/End: Original strand, 305 - 422
Target Start/End: Original strand, 97974 - 98091
Alignment:
| Q |
305 |
catgttaaacttcaccatatccatggtgaaagtagaagaaatgcagaagcttaacaaggaagaaagagag-aaatcgagagaaaattctagattcattga |
403 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||| |||| |||| |||| ||||||||||||| |
|
|
| T |
97974 |
catgttaaacttcaccatatccatggtggaagttgaagaaatgcagaagcttaacaaagaagaaagagagaaaattgagataaaa-gctagattcattga |
98072 |
T |
|
| Q |
404 |
attgatatgaaaacggtta |
422 |
Q |
| |
|
||||| | ||||||||||| |
|
|
| T |
98073 |
attgagaagaaaacggtta |
98091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014; HSP #2
Raw Score: 70; E-Value: 7e-31
Query Start/End: Original strand, 306 - 422
Target Start/End: Original strand, 93337 - 93453
Alignment:
| Q |
306 |
atgttaaacttcaccatatccatggtgaaagtagaagaaatgcagaagcttaacaaggaagaaagagag-aaatcgagagaaaattctagattcattgaa |
404 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||| |||| |||| |||| |||||||||||||| |
|
|
| T |
93337 |
atgttaaacttcaccatatccatggtggaagttgaagaaatgcagaagcttaacaaagaagaaagagagaaaattgagataaaa-gctagattcattgaa |
93435 |
T |
|
| Q |
405 |
ttgatatgaaaacggtta |
422 |
Q |
| |
|
|||| | ||||||||||| |
|
|
| T |
93436 |
ttgagaagaaaacggtta |
93453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 2e-31; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 2e-31
Query Start/End: Original strand, 305 - 422
Target Start/End: Complemental strand, 16254473 - 16254356
Alignment:
| Q |
305 |
catgttaaacttcaccatatccatggtgaaagtagaagaaatgcagaagcttaacaaggaagaaagagagaaa-tcgagagaaaattctagattcattga |
403 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| | ||| |||| ||||||||||||| |
|
|
| T |
16254473 |
catgttaaacttcaccatatccatggtgaaagttgaagaaatgcagaagcttaacaaagaagaaagagagaaaatttagataaaag-ctagattcattga |
16254375 |
T |
|
| Q |
404 |
attgatatgaaaacggtta |
422 |
Q |
| |
|
||||| | ||||||||||| |
|
|
| T |
16254374 |
attgagaagaaaacggtta |
16254356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 3e-30
Query Start/End: Original strand, 307 - 422
Target Start/End: Complemental strand, 16259181 - 16259066
Alignment:
| Q |
307 |
tgttaaacttcaccatatccatggtgaaagtagaagaaatgcagaagcttaacaaggaagaaagagag-aaatcgagagaaaattctagattcattgaat |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||| |||| |||| |||| ||||||||||||||| |
|
|
| T |
16259181 |
tgttaaacttcaccatatccatggtgaaagttgaagaaatgaagaagcttaacaaagaagaaagagagaaaattgagataaaa-gctagattcattgaat |
16259083 |
T |
|
| Q |
406 |
tgatatgaaaacggtta |
422 |
Q |
| |
|
||| | ||||||||||| |
|
|
| T |
16259082 |
tgagaagaaaacggtta |
16259066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 2e-31; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 2e-31
Query Start/End: Original strand, 305 - 422
Target Start/End: Complemental strand, 13985943 - 13985826
Alignment:
| Q |
305 |
catgttaaacttcaccatatccatggtgaaagtagaagaaatgcagaagcttaacaaggaagaaagagag-aaatcgagagaaaattctagattcattga |
403 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||| |||| |||| |||| ||||||||||||| |
|
|
| T |
13985943 |
catgttaaacttcaccatatccatggtggaagttgaagaaatgcagaagcttaacaaagaagaaagagagaaaattgagataaaa-gctagattcattga |
13985845 |
T |
|
| Q |
404 |
attgatatgaaaacggtta |
422 |
Q |
| |
|
||||| | ||||||||||| |
|
|
| T |
13985844 |
attgagaagaaaacggtta |
13985826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 7e-31
Query Start/End: Original strand, 306 - 422
Target Start/End: Complemental strand, 13990580 - 13990464
Alignment:
| Q |
306 |
atgttaaacttcaccatatccatggtgaaagtagaagaaatgcagaagcttaacaaggaagaaagagag-aaatcgagagaaaattctagattcattgaa |
404 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||| |||| |||| |||| |||||||||||||| |
|
|
| T |
13990580 |
atgttaaacttcaccatatccatggtggaagttgaagaaatgcagaagcttaacaaagaagaaagagagaaaattgagataaaa-gctagattcattgaa |
13990482 |
T |
|
| Q |
405 |
ttgatatgaaaacggtta |
422 |
Q |
| |
|
|||| | ||||||||||| |
|
|
| T |
13990481 |
ttgagaagaaaacggtta |
13990464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 252 - 306
Target Start/End: Complemental strand, 18983497 - 18983443
Alignment:
| Q |
252 |
aaatttaataatggaatcaaaattttcagctcttgaatttgcaggtcaagaagca |
306 |
Q |
| |
|
||||||| ||||| |||||||| ||||||||||||||||||||| ||| |||||| |
|
|
| T |
18983497 |
aaatttactaatgaaatcaaaagtttcagctcttgaatttgcagatcatgaagca |
18983443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 306
Target Start/End: Complemental strand, 2671367 - 2671207
Alignment:
| Q |
141 |
taaattggatctcaaataaagacgaggtaggtttcgttgtgaagtacttatttatctcatgatgatgtgattgatatctcttggaaataaataa-gcaaa |
239 |
Q |
| |
|
|||||| ||||| |||||||||| |||| ||| | || ||||||||| ||||| |||| |||||||| | |||||| |||||||||||| ||| | |
|
|
| T |
2671367 |
taaattcgatctaaaataaagacagggtaagttccattacgaagtacttgtttatttcattatgatgtggt----atctctaggaaataaataaagcata |
2671272 |
T |
|
| Q |
240 |
ctatgcatagtcaaatttaataatggaatcaaaattttcagctcttgaatttgcaggtcaagaagca |
306 |
Q |
| |
|
||||| | |||||||||| |||| |||||||||| ||||| |||| |||||| ||||||||||| |
|
|
| T |
2671271 |
-tatgctt-gtcaaatttaccaatgaaatcaaaattcgcagctattgactttgcaagtcaagaagca |
2671207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 70; Significance: 7e-31; HSPs: 2)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 70; E-Value: 7e-31
Query Start/End: Original strand, 306 - 422
Target Start/End: Original strand, 244968 - 245084
Alignment:
| Q |
306 |
atgttaaacttcaccatatccatggtgaaagtagaagaaatgcagaagcttaacaaggaagaaagagag-aaatcgagagaaaattctagattcattgaa |
404 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||| |||| |||| |||| |||||||||||||| |
|
|
| T |
244968 |
atgttaaacttcaccatatccatggtggaagttgaagaaatgcagaagcttaacaaagaagaaagagagaaaattgagataaaa-gctagattcattgaa |
245066 |
T |
|
| Q |
405 |
ttgatatgaaaacggtta |
422 |
Q |
| |
|
|||| | ||||||||||| |
|
|
| T |
245067 |
ttgagaagaaaacggtta |
245084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013; HSP #2
Raw Score: 61; E-Value: 2e-25
Query Start/End: Original strand, 305 - 377
Target Start/End: Original strand, 251091 - 251163
Alignment:
| Q |
305 |
catgttaaacttcaccatatccatggtgaaagtagaagaaatgcagaagcttaacaaggaagaaagagagaaa |
377 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
251091 |
catgttaaacttcaccatatccatggtggaagttgaagaaatgcagaagcttaacaaagaagaaagagagaaa |
251163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 3e-27; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 3e-27
Query Start/End: Original strand, 225 - 307
Target Start/End: Original strand, 16748222 - 16748305
Alignment:
| Q |
225 |
aaataaataa-gcaaactatgcatagtcaaatttaataatggaatcaaaattttcagctcttgaatttgcaggtcaagaagcat |
307 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
16748222 |
aaataaataaagcaaagtatgcatagtcaaatttactaatggaatcaaaattctcagctcttgaatttgcaggtcaagaagcat |
16748305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 119 - 300
Target Start/End: Complemental strand, 37344391 - 37344214
Alignment:
| Q |
119 |
atcttagaaggattgaatagtataaattggatctcaaataaagacgaggtaggtttcgttgtgaagtacttatttatctcatgatgatgtgattgatatc |
218 |
Q |
| |
|
|||||||||||||| ||| | ||||||||||||| |||||||| ||||| ||| | ||| |||| |||||||||| ||| ||||||| |||||| |
|
|
| T |
37344391 |
atcttagaaggattttatattgtaaattggatctccaataaagatgaggtgagttccattgcgaagcacttatttatttcacgatgatg----tgatatt |
37344296 |
T |
|
| Q |
219 |
tcttggaaataaat-aagcaaactatgcatagtcaaatttaataatggaatcaaaattttcagctcttgaatttgcaggtcaa |
300 |
Q |
| |
|
|||||||||||||| ||||||| |||| |||||| ||||| ||||| |||||||||| |||||||||||||| ||||||| |
|
|
| T |
37344295 |
tcttggaaataaataaagcaaa-tatgtgtagtcatatttactaatgaaatcaaaattcatagctcttgaatttgaaggtcaa |
37344214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 309 - 415
Target Start/End: Complemental strand, 30682633 - 30682527
Alignment:
| Q |
309 |
ttaaacttcaccatatccatggtgaaagtagaagaaatgcagaagcttaacaaggaagaaagagagaaatcgagagaaaattctagattcattgaattga |
408 |
Q |
| |
|
|||||||||||||||||||||||| || ||| ||||||||||| | || | ||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
30682633 |
ttaaacttcaccatatccatggtggaatcagagaaaatgcagaagttcaatgaagaagaaagagagaaaattagagaaaattctagattcattgaattga |
30682534 |
T |
|
| Q |
409 |
tatgaaa |
415 |
Q |
| |
|
| ||||| |
|
|
| T |
30682533 |
tctgaaa |
30682527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 6e-19
Query Start/End: Original strand, 212 - 304
Target Start/End: Complemental strand, 29735793 - 29735700
Alignment:
| Q |
212 |
tgatatctcttggaaataaat-aagcaaactatgcatagtcaaatttaataatggaatcaaaattttcagctcttgaatttgcaggtcaagaag |
304 |
Q |
| |
|
||||||||||||||||||||| ||| ||| || ||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
29735793 |
tgatatctcttggaaataaattaagtaaaatacatatagtcaaatttactaatggaatcaaaattttatgctcttgaatttgcagatcaagaag |
29735700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 47; E-Value: 4e-17
Query Start/End: Original strand, 309 - 415
Target Start/End: Original strand, 30054701 - 30054807
Alignment:
| Q |
309 |
ttaaacttcaccatatccatggtgaaagtagaagaaatgcagaagcttaacaaggaagaaagagagaaatcgagagaaaattctagattcattgaattga |
408 |
Q |
| |
|
|||||||||||||||||||||||| || ||| ||||||||||||| ||| | |||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
30054701 |
ttaaacttcaccatatccatggtggaatcagagaaaatgcagaagctcaacgaaaaagaaagagagaaaattagatcaaattctagattcattgaattga |
30054800 |
T |
|
| Q |
409 |
tatgaaa |
415 |
Q |
| |
|
| ||||| |
|
|
| T |
30054801 |
tctgaaa |
30054807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 4e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 4e-20
Query Start/End: Original strand, 878 - 1130
Target Start/End: Complemental strand, 12919532 - 12919278
Alignment:
| Q |
878 |
tggctagccatttattcagtgtcacattgtggtttatttggaagggttggaaccaattgatttttaacaaaacacctttctgt--tgtgtccatcgctat |
975 |
Q |
| |
|
||||||| ||||||| |||||| ||| ||| ||| |||||||||||| |||||||||||||||| || |||||| |||||||| ||| || | || | |
|
|
| T |
12919532 |
tggctagtcatttatccagtgttacactgtcgttgatttggaagggtcggaaccaattgattttcaataaaacaactttctgtcctgtatctactgcgaa |
12919433 |
T |
|
| Q |
976 |
ggaggaatccagattttctgcagagttttttaacgctaatccctcaaagctgaagccaaccatagttttagagccagaaatcttggagcagccgaacatt |
1075 |
Q |
| |
|
||| ||||| ||||||||||| ||||||| |||||||| | ||| ||||| | || ||||| ||| | ||||| || |||||| ||||| || |
|
|
| T |
12919432 |
ggaaatatccaatttttctgcagaattttttattgctaatccgttgaagatgaagtctgtcagagtttcagaactagaaagctgggagcaaccgaatgtt |
12919333 |
T |
|
| Q |
1076 |
ggcacgacaaggatcaaagtagatgaaggatgttttcaaaatggcacaactggtt |
1130 |
Q |
| |
|
||||| |||| |||||| ||||||| |||||| ||||||| ||| |||||||||| |
|
|
| T |
12919332 |
ggcacaacaaagatcaatgtagatgcaggatgctttcaaactggtacaactggtt |
12919278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 312 - 404
Target Start/End: Original strand, 13426843 - 13426935
Alignment:
| Q |
312 |
aacttcaccatatccatggtgaaagtagaagaaatgcagaagcttaacaaggaagaaagagagaaatcgagagaaaattctagattcattgaa |
404 |
Q |
| |
|
||||||||||||||||||||| || ||| ||||| |||| |||| | ||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
13426843 |
aacttcaccatatccatggtggaatcagagaaaatgaagaaacttagggaagaagaaagagagaaaattggagaaaattctagattcattgaa |
13426935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0321 (Bit Score: 30; Significance: 0.0000005; HSPs: 1)
Name: scaffold0321
Description:
Target: scaffold0321; HSP #1
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 307
Target Start/End: Original strand, 1933 - 1986
Alignment:
| Q |
254 |
atttaataatggaatcaaaattttcagctcttgaatttgcaggtcaagaagcat |
307 |
Q |
| |
|
||||| ||||| |||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
1933 |
atttactaatgaaatcaaaaatcatagctcttgaatttgcaggtcaagaagcat |
1986 |
T |
|
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