View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7447_low_11 (Length: 324)

Name: NF7447_low_11
Description: NF7447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7447_low_11
NF7447_low_11
[»] chr4 (8 HSPs)
chr4 (221-309)||(27074673-27074761)
chr4 (221-309)||(27154766-27154854)
chr4 (56-125)||(27074509-27074577)
chr4 (56-125)||(27154600-27154668)
chr4 (15-63)||(27074427-27074475)
chr4 (15-63)||(27154518-27154566)
chr4 (66-123)||(6800180-6800237)
chr4 (71-123)||(6804622-6804674)
[»] chr5 (2 HSPs)
chr5 (66-123)||(41361468-41361525)
chr5 (19-63)||(34154038-34154082)
[»] chr3 (1 HSPs)
chr3 (74-129)||(53833662-53833717)
[»] chr1 (1 HSPs)
chr1 (19-63)||(2114951-2114995)


Alignment Details
Target: chr4 (Bit Score: 89; Significance: 7e-43; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 221 - 309
Target Start/End: Original strand, 27074673 - 27074761
Alignment:
Q  221 gcacgagcgtatcattaccactttccataggtgcaaatgaggagtgtgaattctgcctatcttccctagttcttagagagatgtgaaac 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27074673 gcacgagcgtatcattaccactttccataggtgcaaatgaggagtgtgaattctgcctatcttccctagttcttagagagatgtgaaac 27074761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 221 - 309
Target Start/End: Original strand, 27154766 - 27154854
Alignment:
Q  221 gcacgagcgtatcattaccactttccataggtgcaaatgaggagtgtgaattctgcctatcttccctagttcttagagagatgtgaaac 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27154766 gcacgagcgtatcattaccactttccataggtgcaaatgaggagtgtgaattctgcctatcttccctagttcttagagagatgtgaaac 27154854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 56 - 125
Target Start/End: Original strand, 27074509 - 27074577
Alignment:
Q  56 gctttgagcaagtgtgtttgcacgcctcagccaataaccgataagttctcccgttcttctttattttaat 125  Q
    ||||| ||||||||||||||||| ||||||||||||| |||||| ||||||| |||||||||||||||||    
T  27074509 gctttaagcaagtgtgtttgcacacctcagccaataa-cgataaattctccccttcttctttattttaat 27074577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 56 - 125
Target Start/End: Original strand, 27154600 - 27154668
Alignment:
Q  56 gctttgagcaagtgtgtttgcacgcctcagccaataaccgataagttctcccgttcttctttattttaat 125  Q
    ||||| ||||||||||||||||| ||||||||||||| |||||| ||||||| |||||||||||||||||    
T  27154600 gctttaagcaagtgtgtttgcacacctcagccaataa-cgataaattctccccttcttctttattttaat 27154668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 27074427 - 27074475
Alignment:
Q  15 aatattagtgagaagtggttgttgtatcttggagatcactagctttgag 63  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  27074427 aatattagtgagaagtggttgttgtatcttggagattactagctttgag 27074475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 27154518 - 27154566
Alignment:
Q  15 aatattagtgagaagtggttgttgtatcttggagatcactagctttgag 63  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  27154518 aatattagtgagaagtggttgttgtatcttggagattactagctttgag 27154566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 123
Target Start/End: Complemental strand, 6800237 - 6800180
Alignment:
Q  66 agtgtgtttgcacgcctcagccaataaccgataagttctcccgttcttctttatttta 123  Q
    |||| |||||||||||||||||||  ||||||||||||| || |||||||||||||||    
T  6800237 agtgcgtttgcacgcctcagccaaggaccgataagttcttcctttcttctttatttta 6800180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 71 - 123
Target Start/End: Complemental strand, 6804674 - 6804622
Alignment:
Q  71 gtttgcacgcctcagccaataaccgataagttctcccgttcttctttatttta 123  Q
    |||||||||||||||||||  ||||||||||||| || |||||||||||||||    
T  6804674 gtttgcacgcctcagccaaggaccgataagttcttcctttcttctttatttta 6804622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 123
Target Start/End: Original strand, 41361468 - 41361525
Alignment:
Q  66 agtgtgtttgcacgcctcagccaataaccgataagttctcccgttcttctttatttta 123  Q
    |||| |||||||||||||||||||  ||||||||||||| || |||||||||||||||    
T  41361468 agtgcgtttgcacgcctcagccaaggaccgataagttcttcctttcttctttatttta 41361525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 34154082 - 34154038
Alignment:
Q  19 ttagtgagaagtggttgttgtatcttggagatcactagctttgag 63  Q
    ||||||| |||||| ||||||||| |||||| |||||||||||||    
T  34154082 ttagtgaaaagtggctgttgtatcctggagagcactagctttgag 34154038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 74 - 129
Target Start/End: Original strand, 53833662 - 53833717
Alignment:
Q  74 tgcacgcctcagccaataaccgataagttctcccgttcttctttattttaatgaga 129  Q
    ||||||||||||||||  | ||||||||||| || ||||||||||||||| |||||    
T  53833662 tgcacgcctcagccaacgatcgataagttcttcctttcttctttattttactgaga 53833717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 2114995 - 2114951
Alignment:
Q  19 ttagtgagaagtggttgttgtatcttggagatcactagctttgag 63  Q
    ||||||||||||||||| |||||||| ||||  ||||||||||||    
T  2114995 ttagtgagaagtggttgatgtatctttgagaatactagctttgag 2114951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University