View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7447_low_17 (Length: 250)

Name: NF7447_low_17
Description: NF7447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7447_low_17
NF7447_low_17
[»] chr4 (26 HSPs)
chr4 (1-239)||(26188370-26188609)
chr4 (9-103)||(10450874-10450968)
chr4 (23-95)||(9288565-9288637)
chr4 (23-89)||(19602417-19602483)
chr4 (3-91)||(1695310-1695397)
chr4 (18-98)||(4733339-4733419)
chr4 (23-103)||(29438063-29438143)
chr4 (36-95)||(22219351-22219409)
chr4 (5-77)||(5676814-5676886)
chr4 (18-93)||(7023630-7023706)
chr4 (23-103)||(9782494-9782573)
chr4 (25-103)||(1001868-1001951)
chr4 (18-73)||(21047823-21047878)
chr4 (24-95)||(33519673-33519744)
chr4 (22-103)||(22120303-22120385)
chr4 (24-109)||(12110717-12110801)
chr4 (23-103)||(17024322-17024401)
chr4 (5-95)||(10577081-10577172)
chr4 (36-103)||(18898642-18898709)
chr4 (24-103)||(20985007-20985086)
chr4 (24-103)||(17332039-17332120)
chr4 (23-76)||(27303364-27303415)
chr4 (12-77)||(31859315-31859380)
chr4 (35-108)||(24041792-24041867)
chr4 (39-95)||(47024154-47024210)
chr4 (12-76)||(51885256-51885319)
[»] chr2 (17 HSPs)
chr2 (5-239)||(9504537-9504773)
chr2 (5-239)||(9515903-9516139)
chr2 (23-228)||(21503845-21504052)
chr2 (5-95)||(21842597-21842687)
chr2 (5-95)||(21844226-21844316)
chr2 (25-184)||(27416572-27416732)
chr2 (23-98)||(20518659-20518733)
chr2 (23-87)||(24188649-24188713)
chr2 (23-103)||(27917437-27917517)
chr2 (23-102)||(14921484-14921562)
chr2 (23-103)||(25460561-25460641)
chr2 (23-95)||(18819320-18819390)
chr2 (23-95)||(22511490-22511562)
chr2 (5-100)||(23909058-23909152)
chr2 (5-76)||(35708388-35708458)
chr2 (23-100)||(21847860-21847938)
chr2 (23-103)||(25474645-25474724)
[»] chr3 (22 HSPs)
chr3 (13-232)||(19263149-19263370)
chr3 (8-210)||(19218478-19218682)
chr3 (5-222)||(10342379-10342599)
chr3 (105-210)||(25918568-25918673)
chr3 (23-103)||(14280683-14280763)
chr3 (22-92)||(2729000-2729070)
chr3 (39-166)||(16976897-16977026)
chr3 (42-172)||(13911950-13912086)
chr3 (24-105)||(27415760-27415840)
chr3 (18-94)||(8401807-8401883)
chr3 (5-76)||(21806121-21806195)
chr3 (24-95)||(5632016-5632087)
chr3 (24-98)||(22488268-22488341)
chr3 (23-103)||(11475497-11475578)
chr3 (5-98)||(19542490-19542583)
chr3 (24-100)||(23907685-23907762)
chr3 (23-154)||(33913943-33914075)
chr3 (18-103)||(26419385-26419471)
chr3 (5-70)||(28731053-28731118)
chr3 (23-103)||(18474844-18474925)
chr3 (26-98)||(21018244-21018317)
chr3 (18-103)||(21828593-21828678)
[»] chr1 (23 HSPs)
chr1 (5-231)||(11984484-11984712)
chr1 (18-188)||(11769310-11769480)
chr1 (23-198)||(50047729-50047905)
chr1 (5-141)||(34533253-34533391)
chr1 (24-188)||(18300346-18300514)
chr1 (5-211)||(23223999-23224208)
chr1 (23-89)||(19257371-19257437)
chr1 (23-103)||(12810800-12810879)
chr1 (36-105)||(30676079-30676148)
chr1 (23-95)||(25665189-25665261)
chr1 (25-95)||(23521135-23521204)
chr1 (12-77)||(14744865-14744930)
chr1 (140-188)||(34521642-34521690)
chr1 (6-112)||(30782307-30782411)
chr1 (27-95)||(31314189-31314258)
chr1 (24-76)||(24903227-24903278)
chr1 (40-103)||(21549304-21549367)
chr1 (24-98)||(52270619-52270694)
chr1 (23-77)||(9252085-9252138)
chr1 (23-105)||(9328638-9328718)
chr1 (63-97)||(25778387-25778421)
chr1 (120-161)||(17837314-17837355)
chr1 (18-70)||(26853748-26853800)
[»] chr8 (24 HSPs)
chr8 (23-188)||(24120897-24121063)
chr8 (23-188)||(32239904-32240070)
chr8 (18-98)||(12957144-12957224)
chr8 (23-157)||(24094797-24094932)
chr8 (62-161)||(16051564-16051665)
chr8 (109-210)||(23951885-23951987)
chr8 (12-99)||(30850451-30850538)
chr8 (37-95)||(28075146-28075204)
chr8 (44-103)||(11308225-11308285)
chr8 (24-95)||(14184562-14184633)
chr8 (24-99)||(18771574-18771649)
chr8 (23-89)||(5154413-5154479)
chr8 (18-103)||(6887598-6887683)
chr8 (18-103)||(11438035-11438119)
chr8 (23-98)||(23876585-23876657)
chr8 (34-95)||(28259944-28260005)
chr8 (23-75)||(13305040-13305091)
chr8 (23-95)||(27084973-27085045)
chr8 (35-103)||(29046699-29046767)
chr8 (23-94)||(15213162-15213232)
chr8 (38-93)||(24927258-24927313)
chr8 (18-95)||(12774265-12774342)
chr8 (10-89)||(28290776-28290852)
chr8 (23-95)||(28900727-28900797)
[»] chr7 (24 HSPs)
chr7 (24-239)||(23072960-23073178)
chr7 (18-232)||(3400463-3400681)
chr7 (22-188)||(20470082-20470249)
chr7 (24-188)||(23126764-23126930)
chr7 (23-188)||(20017622-20017789)
chr7 (18-165)||(21545187-21545336)
chr7 (23-99)||(21544290-21544366)
chr7 (27-188)||(20050287-20050446)
chr7 (23-98)||(30406213-30406288)
chr7 (12-103)||(5312171-5312263)
chr7 (5-77)||(22334704-22334776)
chr7 (27-161)||(20040161-20040293)
chr7 (23-103)||(21536942-21537022)
chr7 (23-103)||(24596389-24596469)
chr7 (23-95)||(26839604-26839675)
chr7 (5-103)||(9405254-9405351)
chr7 (25-97)||(9760743-9760815)
chr7 (23-76)||(2629947-2629999)
chr7 (6-103)||(7142673-7142773)
chr7 (35-94)||(3094034-3094093)
chr7 (23-58)||(4091926-4091961)
chr7 (5-88)||(11082164-11082244)
chr7 (24-103)||(7326379-7326459)
chr7 (5-73)||(7815930-7815997)
[»] chr6 (14 HSPs)
chr6 (18-188)||(17859787-17859959)
chr6 (43-160)||(16528297-16528416)
chr6 (23-188)||(19669921-19670087)
chr6 (5-105)||(30235763-30235863)
chr6 (5-232)||(13723130-13723358)
chr6 (3-77)||(32929889-32929964)
chr6 (24-95)||(9395996-9396068)
chr6 (5-95)||(30756262-30756353)
chr6 (5-76)||(9725606-9725676)
chr6 (18-95)||(15319463-15319540)
chr6 (35-103)||(15370120-15370189)
chr6 (50-95)||(16440016-16440061)
chr6 (23-103)||(28178629-28178710)
chr6 (33-93)||(22263029-22263089)
[»] chr5 (22 HSPs)
chr5 (8-214)||(16621917-16622127)
chr5 (23-188)||(18451539-18451707)
chr5 (29-188)||(25681186-25681347)
chr5 (18-102)||(19763285-19763370)
chr5 (23-171)||(17381328-17381478)
chr5 (5-86)||(20695252-20695333)
chr5 (5-77)||(17028888-17028960)
chr5 (23-98)||(12265003-12265078)
chr5 (24-103)||(18281605-18281684)
chr5 (8-103)||(30791237-30791332)
chr5 (18-77)||(20084132-20084191)
chr5 (9-103)||(24842310-24842404)
chr5 (12-78)||(7742305-7742370)
chr5 (23-103)||(24268732-24268810)
chr5 (23-103)||(24345362-24345440)
chr5 (23-89)||(20715221-20715286)
chr5 (22-103)||(26328387-26328467)
chr5 (24-188)||(25593960-25594126)
chr5 (18-77)||(24517759-24517818)
chr5 (18-69)||(25945873-25945924)
chr5 (24-89)||(24131270-24131336)
chr5 (24-70)||(31267659-31267705)
[»] scaffold0171 (2 HSPs)
scaffold0171 (27-166)||(6793-6934)
scaffold0171 (32-232)||(21972-22174)
[»] scaffold0022 (1 HSPs)
scaffold0022 (45-211)||(68820-68988)
[»] scaffold0186 (1 HSPs)
scaffold0186 (24-97)||(33144-33217)
[»] scaffold0386 (2 HSPs)
scaffold0386 (3-77)||(11180-11254)
scaffold0386 (18-79)||(8148-8209)
[»] scaffold0282 (1 HSPs)
scaffold0282 (9-95)||(22021-22106)
[»] scaffold0337 (1 HSPs)
scaffold0337 (23-91)||(3787-3855)
[»] scaffold0624 (1 HSPs)
scaffold0624 (22-93)||(4607-4677)
[»] scaffold0362 (1 HSPs)
scaffold0362 (23-74)||(8298-8348)
[»] scaffold0855 (1 HSPs)
scaffold0855 (23-76)||(2443-2495)
[»] scaffold0847 (1 HSPs)
scaffold0847 (23-76)||(2608-2660)


Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 26188370 - 26188609
Alignment:
Q  1 ttacgatgtatgttgtaatgtacaactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttattta 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26188370 ttacgatgtatgttgtcatgtacaactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttattta 26188469  T
Q  101 gttatatttcttgtgtccaatttaa-tttgttcttgtttgtgcttaatgctttttcaattgagaatccgtatcaataatcttaaaaatttatctttatag 199  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  26188470 gttatatttcttgtgtccaatttaatttttttcttgtttgtgcttaatgctttttcaattgagaatccgcatcgataatcttaaaaatttatctttatag 26188569  T
Q  200 attagtaggattaacgatccaaaattcttcttcggttcat 239  Q
    |||||||| |||||||||||||||||||||||| ||||||    
T  26188570 attagtagcattaacgatccaaaattcttcttctgttcat 26188609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 103
Target Start/End: Complemental strand, 10450968 - 10450874
Alignment:
Q  9 tatgttgtaatgtacaactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagt-ttttatttagtt 103  Q
    |||||||| ||| ||||||||||||||| ||||||||||||| ||||||| |||| ||||||||||||||  ||||||||||| ||||||| ||||    
T  10450968 tatgttgtcatgaacaactaaacctctt-gattagggttctatgatgaaccccttattatttgttggatattattaataaagtcttttattcagtt 10450874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 23 - 95
Target Start/End: Original strand, 9288565 - 9288637
Alignment:
Q  23 caactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagttttt 95  Q
    |||||||||||||||||||| |||||||  |||||| |||| ||||||||||||| | |||||||||||||||    
T  9288565 caactaaacctctttgattatggttctacaatgaaccccttattatttgttggattcaattaataaagttttt 9288637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 89
Target Start/End: Original strand, 19602417 - 19602483
Alignment:
Q  23 caactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaa 89  Q
    ||||||||| |||||||||||||||| | ||||||| |||||| ||||||||||||| |||||||||    
T  19602417 caactaaacttctttgattagggttccatgatgaaccccttctcatttgttggatactattaataaa 19602483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 91
Target Start/End: Complemental strand, 1695397 - 1695310
Alignment:
Q  3 acgatgtatgttgtaatgtacaactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagt 91  Q
    ||||||| |||||| |||  |||||||||||||| ||||||||||| | ||||||| ||||||||||||||| |||  |||||||||||    
T  1695397 acgatgtttgttgtcatgaccaactaaacctctt-gattagggttccatgatgaaccccttcttatttgttgaatattattaataaagt 1695310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 4733339 - 4733419
Alignment:
Q  18 atgtacaactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttatt 98  Q
    |||| |||||||||||||||||||||||| | | |||||| | ||||||||||||||||| | |||||||||  |||||||    
T  4733339 atgtgcaactaaacctctttgattagggtcccacgatgaattacttcttatttgttggattcaattaataaatgttttatt 4733419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 103
Target Start/End: Original strand, 29438063 - 29438143
Alignment:
Q  23 caactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttatttagtt 103  Q
    |||||||||||||||||||||||||| |  |||||| | |||||||||||||||| |  |||||||| |||||||| ||||    
T  29438063 caactaaacctctttgattagggttccacaatgaaccctttcttatttgttggattcttttaataaattttttattcagtt 29438143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 36 - 95
Target Start/End: Original strand, 22219351 - 22219409
Alignment:
Q  36 ttgattagggttctaagatgaactccttcttatttgttggataccattaataaagttttt 95  Q
    ||||||||||||| ||||||||| |||||||||||||||||||  |||||||||||||||    
T  22219351 ttgattagggttccaagatgaac-ccttcttatttgttggatattattaataaagttttt 22219409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 5676814 - 5676886
Alignment:
Q  5 gatgtatgttgtaatgtacaactaaacctctttgattagggttctaagatgaactccttcttatttgttggat 77  Q
    |||||||||||  |||| ||||| ||||||||||||||||||||||||| ||||  ||| |||||| ||||||    
T  5676814 gatgtatgttgctatgtgcaactgaacctctttgattagggttctaagaagaacctcttattattttttggat 5676886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 7023706 - 7023630
Alignment:
Q  18 atgtacaactaaacctct-ttgattagggttctaagatgaactccttcttatttgttggataccattaataaagttt 93  Q
    |||| ||||||||||||| ||||||| ||||| | ||||||| | |||||||||||||||| | |||||||||||||    
T  7023706 atgtgcaactaaacctctcttgattatggttccatgatgaacccattcttatttgttggattcaattaataaagttt 7023630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 103
Target Start/End: Complemental strand, 9782573 - 9782494
Alignment:
Q  23 caactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttatttagtt 103  Q
    |||||||||||||| ||||||||||| | ||||||| |||||||||||||||||    |||||||||||||| ||| ||||    
T  9782573 caactaaacctctt-gattagggttccacgatgaaccccttcttatttgttggaatttattaataaagttttcattcagtt 9782494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 103
Target Start/End: Original strand, 1001868 - 1001951
Alignment:
Q  25 actaaacctctttgattagggttctaagatgaact-----ccttcttatttgttggataccattaataaagtttttatttagtt 103  Q
    ||||||| |||||||||||||||| | |||||| |     |||||| ||||||||||| |||||||||||||||||||| ||||    
T  1001868 actaaacttctttgattagggttccacgatgaattgaatcccttctaatttgttggattccattaataaagtttttattcagtt 1001951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 21047823 - 21047878
Alignment:
Q  18 atgtacaactaaacctctttgattagggttctaagatgaactccttcttatttgtt 73  Q
    |||| |||||||||||||||||||||||||  ||||||||||| ||||||| ||||    
T  21047823 atgtgcaactaaacctctttgattagggtttcaagatgaactcattcttatctgtt 21047878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 95
Target Start/End: Original strand, 33519673 - 33519744
Alignment:
Q  24 aactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagttttt 95  Q
    ||||||||||||||||||||||||  | | ||||| ||||||||||||||  || | |||||||||||||||    
T  33519673 aactaaacctctttgattagggtttcacgttgaaccccttcttatttgttaaattcaattaataaagttttt 33519744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 22 - 103
Target Start/End: Original strand, 22120303 - 22120385
Alignment:
Q  22 acaactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaag-tttttatttagtt 103  Q
    |||||||| ||| |||||||||||||  | ||||||| |||||||||||||||  | | |||||||||| |||||||||||||    
T  22120303 acaactaagcctatttgattagggtttcacgatgaacaccttcttatttgttgttttcaattaataaagttttttatttagtt 22120385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 109
Target Start/End: Complemental strand, 12110801 - 12110717
Alignment:
Q  24 aactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttatttagttatattt 109  Q
    |||||||||||||| || ||||||| ||||||||| ||  |||||||||||||| | |||| ||||||||| ||| || |||||||    
T  12110801 aactaaacctcttt-atcagggttccaagatgaaccccaacttatttgttggattctattattaaagttttcattcaggtatattt 12110717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 103
Target Start/End: Complemental strand, 17024401 - 17024322
Alignment:
Q  23 caactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttatttagtt 103  Q
    ||||||||||||||| |||||||||| | ||||||| | ||||||||| || ||||  |||||||||||||| ||| ||||    
T  17024401 caactaaacctcttt-attagggttccatgatgaaccctttcttatttttttgatattattaataaagttttcattcagtt 17024322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 95
Target Start/End: Original strand, 10577081 - 10577172
Alignment:
Q  5 gatgtatgttgtaatgtacaactaaacctct-ttgattagggttctaagatgaactccttcttatttgttggataccattaataaagttttt 95  Q
    ||||| |||||  |||| ||||||||||||| |||| |||||||| | |||||||  ||||||||||||||||| | ||| || ||||||||    
T  10577081 gatgtttgttgccatgtccaactaaacctctattgactagggttccatgatgaacctcttcttatttgttggattcaatttatgaagttttt 10577172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 103
Target Start/End: Original strand, 18898642 - 18898709
Alignment:
Q  36 ttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttatttagtt 103  Q
    ||||||| ||||| ||||||||| |||||||||||||| ||||  ||||||||| |||| ||| ||||    
T  18898642 ttgattatggttccaagatgaaccccttcttatttgtttgatattattaataaacttttcattcagtt 18898709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 103
Target Start/End: Complemental strand, 20985086 - 20985007
Alignment:
Q  24 aactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttatttagtt 103  Q
    |||| ||||| |||||||||||||| | ||||||  |||||||||||||||| | |  ||||||||||||| ||| ||||    
T  20985086 aactgaacctatttgattagggttccatgatgaatcccttcttatttgttgggttcttttaataaagttttcattcagtt 20985007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 103
Target Start/End: Complemental strand, 17332120 - 17332039
Alignment:
Q  24 aactaaacctct-ttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttt-tatttagtt 103  Q
    |||||||||||| ||||||||||||| | |||||||  || ||||||| |||||| | ||| |||||||||| |||||||||    
T  17332120 aactaaacctctcttgattagggttccatgatgaacctctacttatttcttggattcaattcataaagttttgtatttagtt 17332039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 27303364 - 27303415
Alignment:
Q  23 caactaaacctctttgattagggttctaagatgaactccttcttatttgttgga 76  Q
    |||||||||||||| ||||||||||| | ||||||| |||||||||||||||||    
T  27303364 caactaaacctctt-gattagggttccacgatgaac-ccttcttatttgttgga 27303415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 31859380 - 31859315
Alignment:
Q  12 gttgtaatgtacaactaaacctctttgattagggttctaagatgaactccttcttatttgttggat 77  Q
    ||||| |||| |||||||||||||||||||| ||||| | ||| ||| |||| |||||| ||||||    
T  31859380 gttgtcatgtgcaactaaacctctttgattaaggttccacgataaaccccttattattttttggat 31859315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 108
Target Start/End: Complemental strand, 24041867 - 24041792
Alignment:
Q  35 tttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtt--tttatttagttatatt 108  Q
    |||||||||||||||| |||||||  ||| ||||||||||||   |||||||||| ||  |||||| |||||||||    
T  24041867 tttgattagggttctatgatgaacctctttttatttgttggaattcattaataaaatttatttattcagttatatt 24041792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 95
Target Start/End: Complemental strand, 47024210 - 47024154
Alignment:
Q  39 attagggttctaagatgaactccttcttatttgttggataccattaataaagttttt 95  Q
    |||||||||| ||||||||   ||||||||||||| ||||  |||||||||||||||    
T  47024210 attagggttccaagatgaatctcttcttatttgtttgatattattaataaagttttt 47024154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 51885256 - 51885319
Alignment:
Q  12 gttgtaatgtacaactaaacctctttgattagggttctaagatgaactccttcttatttgttgga 76  Q
    ||||| ||| ||||||||||||||| ||||||| ||| | ||||||| ||||||||||| |||||    
T  51885256 gttgtcatgaacaactaaacctctt-gattaggtttccacgatgaaccccttcttatttattgga 51885319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 5 - 239
Target Start/End: Original strand, 9504537 - 9504773
Alignment:
Q  5 gatgtatgttgtaatgtacaactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttatttagtta 104  Q
    ||||| |||||  ||||||||||||||||||||||||| ||||||||||||||  |||||||||||||||||| ||||||| |||||||||||| |||||    
T  9504537 gatgtttgttgccatgtacaactaaacctctttgattatggttctaagatgaatcccttcttatttgttggattccattaacaaagtttttattcagtta 9504636  T
Q  105 --tatttcttgtgtccaatttaatttgttcttgtttgtgcttaatgctttttcaattgagaatccgtatcaataatcttaaaaatttatctttatagatt 202  Q
      | |||||||||||| |||||||||||| |||  ||| |||||||||||||||||||||||||||| ||  ||||||| ||||||  | | ||||||||    
T  9504637 tgtttttcttgtgtccgatttaatttgtttttgcatgtacttaatgctttttcaattgagaatccgtgtcggtaatctttaaaattggtttgtatagatt 9504736  T
Q  203 agtaggattaacgatccaaaattcttcttcggttcat 239  Q
    |||| |||| || | || |||||||||||| ||||||    
T  9504737 agtaagattgacaaccctaaattcttcttccgttcat 9504773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 5 - 239
Target Start/End: Original strand, 9515903 - 9516139
Alignment:
Q  5 gatgtatgttgtaatgtacaactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttatttagtta 104  Q
    ||||| |||||  ||||||||||||||||||||||||| ||||||||||||||  |||||||||||||||||| ||||||| |||||||||||| |||||    
T  9515903 gatgtttgttgccatgtacaactaaacctctttgattatggttctaagatgaatcccttcttatttgttggattccattaacaaagtttttattcagtta 9516002  T
Q  105 --tatttcttgtgtccaatttaatttgttcttgtttgtgcttaatgctttttcaattgagaatccgtatcaataatcttaaaaatttatctttatagatt 202  Q
      | |||||||||||| |||||||||||| |||  ||| |||||||||||||||||||||||||||| ||  ||||||| ||||||  | | ||||||||    
T  9516003 tgtttttcttgtgtccgatttaatttgtttttgcatgtacttaatgctttttcaattgagaatccgtgtcggtaatctttaaaattggtttgtatagatt 9516102  T
Q  203 agtaggattaacgatccaaaattcttcttcggttcat 239  Q
    |||| |||| || | || |||||||||||| ||||||    
T  9516103 agtaagattgacaaccctaaattcttcttccgttcat 9516139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 23 - 228
Target Start/End: Complemental strand, 21504052 - 21503845
Alignment:
Q  23 caactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttatttagttat--atttcttgtgtccaa 120  Q
    ||||||||||| |||||| ||| ||| ||||||||| | |||||||||| ||||| | |||||||||| ||||||||||||||   |||||||||||| |    
T  21504052 caactaaacctttttgatcaggattccaagatgaaccctttcttatttgatggattcaattaataaag-ttttatttagttatgcttttcttgtgtccga 21503954  T
Q  121 tttaatttgttcttgtttgtgcttaatgctttttcaattgagaatccgtatcaataatcttaaaaatttatcttta-tagattagtaggattaacgatcc 219  Q
    |||||||||| ||||| ||  ||||||| | |||||| ||||||||  ||| | ||||||| |||||| |||  || |||||||||||||||||| | ||    
T  21503953 tttaatttgtacttgtctgatcttaatgatgtttcaactgagaatctatattagtaatcttgaaaattgatccgtagtagattagtaggattaacaaccc 21503854  T
Q  220 aaaattctt 228  Q
    |||||||||    
T  21503853 aaaattctt 21503845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 5 - 95
Target Start/End: Complemental strand, 21842687 - 21842597
Alignment:
Q  5 gatgtatgttgtaatgtacaactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagttttt 95  Q
    |||||||||||  ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| | |||||||||||||||    
T  21842687 gatgtatgttgccatgtacaactaaacctctttgattagggttccaagatgaactcattcttatttgttggattcaattaataaagttttt 21842597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 5 - 95
Target Start/End: Complemental strand, 21844316 - 21844226
Alignment:
Q  5 gatgtatgttgtaatgtacaactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagttttt 95  Q
    |||||||||||  ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| | |||||||||||||||    
T  21844316 gatgtatgttgccatgtacaactaaacctctttgattagggttccaagatgaactcattcttatttgttggattcaattaataaagttttt 21844226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 25 - 184
Target Start/End: Complemental strand, 27416732 - 27416572
Alignment:
Q  25 actaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttatttagttat--atttcttgtgtccaatt 122  Q
    |||||||||||| ||||||||||| || |||||| |||| ||||||||||||| | ||| ||||||||| |||| ||||||   |||||||||||| |||    
T  27416732 actaaacctctt-gattagggttccaatatgaaccccttattatttgttggattcaatttataaagtttctattgagttatgattttcttgtgtccgatt 27416634  T
Q  123 taatttgttcttgtttgtgcttaatgctttttcaattgagaatccgtatcaataatcttaaa 184  Q
    ||||| ||||||     |||||||||||||||| ||||| ||||| ||||||||||||||||    
T  27416633 taattcgttctttcacatgcttaatgctttttcgattgataatccatatcaataatcttaaa 27416572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 98
Target Start/End: Complemental strand, 20518733 - 20518659
Alignment:
Q  23 caactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttatt 98  Q
    |||||||||||| ||||||||||||||| ||||||| ||||||||||| |||||  | ||||||||||||||||||    
T  20518733 caactaaacctccttgattagggttctacgatgaaccccttcttattt-ttggaatcaattaataaagtttttatt 20518659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 24188649 - 24188713
Alignment:
Q  23 caactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaata 87  Q
    ||||||||||| |||||||| ||||| | |||||||||||||||||||||||||| | |||||||    
T  24188649 caactaaacctgtttgattaaggttccatgatgaactccttcttatttgttggattctattaata 24188713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 103
Target Start/End: Complemental strand, 27917517 - 27917437
Alignment:
Q  23 caactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttatttagtt 103  Q
    ||||||||| |||||||||||| ||| | | ||| | ||||| |||||||||||| |||||||||| ||||||||||||||    
T  27917517 caactaaacttctttgattaggtttcaacgttgatcaccttcctatttgttggattccattaataatgtttttatttagtt 27917437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 23 - 102
Target Start/End: Complemental strand, 14921562 - 14921484
Alignment:
Q  23 caactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttatttagt 102  Q
    |||| ||||||||| |||||||||||   ||||||| | |||||||||||||||| | ||||||||||||||||||||||    
T  14921562 caacaaaacctcttcgattagggttcctcgatgaac-ctttcttatttgttggattctattaataaagtttttatttagt 14921484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 103
Target Start/End: Original strand, 25460561 - 25460641
Alignment:
Q  23 caactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttatttagtt 103  Q
    ||||||||||| ||||||||| |||  | ||||||  | |||||||||||| ||| | |||||||||||||||||||||||    
T  25460561 caactaaacctatttgattagagtttcacgatgaatacgttcttatttgttagattctattaataaagtttttatttagtt 25460641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 95
Target Start/End: Original strand, 18819320 - 18819390
Alignment:
Q  23 caactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagttttt 95  Q
    |||||| ||||||||||||||||||| | ||||| |  |||||||||||||||| |  |||||||||||||||    
T  18819320 caactagacctctttgattagggttccacgatgacc--cttcttatttgttggaaataattaataaagttttt 18819390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 95
Target Start/End: Original strand, 22511490 - 22511562
Alignment:
Q  23 caactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagttttt 95  Q
    ||||||||| | |||||||||||||| | || |||| | || ||||||||| ||| |||||||||||||||||    
T  22511490 caactaaacttatttgattagggttccatgaagaaccctttattatttgttagattccattaataaagttttt 22511562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 100
Target Start/End: Complemental strand, 23909152 - 23909058
Alignment:
Q  5 gatgtatgttgtaatgtacaactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttattta 100  Q
    |||||||||||  |||  |||||||||||||| ||| ||||||| | ||||||  |||||||||||||||||    |||||||||||||| |||||    
T  23909152 gatgtatgttgccatgagcaactaaacctctt-gatcagggttccacgatgaatcccttcttatttgttggaatttattaataaagttttcattta 23909058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 76
Target Start/End: Original strand, 35708388 - 35708458
Alignment:
Q  5 gatgtatgttgtaatgtacaactaaacctctttgattagggttctaagatgaactccttcttatttgttgga 76  Q
    |||||||||||  |||  |||||||||||||| ||||| ||||| | ||||||||| |||||||||||||||    
T  35708388 gatgtatgttgccatgagcaactaaacctctt-gattaaggttccacgatgaactcattcttatttgttgga 35708458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 100
Target Start/End: Complemental strand, 21847938 - 21847860
Alignment:
Q  23 caactaaacctcttt-gattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttattta 100  Q
    ||||||||||||||| ||||||||||| |||||||||  ||| |||||| |||| |   ||||||||||||||| ||||    
T  21847938 caactaaacctcttttgattagggttccaagatgaaccacttattattttttgggtttaattaataaagttttttttta 21847860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 103
Target Start/End: Original strand, 25474645 - 25474724
Alignment:
Q  23 caactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttatttagtt 103  Q
    |||||||||||||| ||||| ||||| | ||||||| ||||||||||||||| |    |||||||||||||| ||| ||||    
T  25474645 caactaaacctctt-gattatggttccacgatgaaccccttcttatttgttgaaatttattaataaagttttcattaagtt 25474724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 107; Significance: 1e-53; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 13 - 232
Target Start/End: Complemental strand, 19263370 - 19263149
Alignment:
Q  13 ttgtaatgtacaactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttatttagttata--tttc 110  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||  ||||||||||||||||| | | |||||| ||||||||| ||||||   ||||    
T  19263370 ttgtaatgtgcaactacacctctttgattagggttctaagatgaacctcttcttatttgttggattctagtaataatgtttttattcagttatgcttttc 19263271  T
Q  111 ttgtgtccaatttaatttgttcttgtttgtgcttaatgctttttcaattgagaatccgtatcaataatcttaaaaatttatctttatagattagtaggat 210  Q
    |||||||| |||||||| |||||||| ||||||||||||||||||||| |||||||||||||  ||||| ||||||||  ||| | ||||||||||||||    
T  19263270 ttgtgtccgatttaattcgttcttgtctgtgcttaatgctttttcaatcgagaatccgtatcggtaatcataaaaattggtctgtttagattagtaggat 19263171  T
Q  211 taacgatccaaaattcttcttc 232  Q
      || | |||||||| ||||||    
T  19263170 cgacaacccaaaattattcttc 19263149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 8 - 210
Target Start/End: Complemental strand, 19218682 - 19218478
Alignment:
Q  8 gtatgttgtaatgtacaactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttatttagttatat 107  Q
    ||||||||| |||| ||||||||||||||||||||||||||||| |||||    |||||||||||||||| ||||||||||  |||||||| ||||||||    
T  19218682 gtatgttgtcatgtgcaactaaacctctttgattagggttctaacatgaagcttttcttatttgttggattccattaataatttttttattcagttatat 19218583  T
Q  108 tt--cttgtgtccaatttaatttgttcttgtttgtgcttaatgctttttcaattgagaatccgtatcaataatcttaaaaatttatctttatagattagt 205  Q
    ||  ||||||||| |||||||  |||||||| ||||||||| ||| |||||||||| |||  |||||  ||||||||||||||  | | ||||| |||||    
T  19218582 ttttcttgtgtccgatttaatccgttcttgtctgtgcttaacgctctttcaattgataatttgtatcggtaatcttaaaaattggtttgtataggttagt 19218483  T
Q  206 aggat 210  Q
    |||||    
T  19218482 aggat 19218478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 5 - 222
Target Start/End: Original strand, 10342379 - 10342599
Alignment:
Q  5 gatgtatgttgtaatgtacaactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttatttagtta 104  Q
    |||||||||||| |||   ||||| ||||||||| ||||||||||||||||||| |||||||||||||||| | | | ||||||| |||| ||||| |||    
T  10342379 gatgtatgttgtcatgagaaactacacctctttggttagggttctaagatgaacaccttcttatttgttggtttcaaataataaatttttcatttactta 10342478  T
Q  105 --tatttcttgtgtccaatttaatttgttcttgtttgtgcttaatgctttttcaattgagaatccgtatcaataatcttaaaaatttatctttatag-at 201  Q
      | |||||||||||| ||| ||||  ||||||  |||| |||||||||||| ||||||| ||  |||||  ||||||| ||| || |||| || || ||    
T  10342479 tgtttttcttgtgtcctattcaattcattcttgcatgtgtttaatgcttttttaattgaggatatgtatcggtaatcttgaaacttgatctgtagagaat 10342578  T
Q  202 tagtaggattaacgatccaaa 222  Q
    |||||||||| |||| |||||    
T  10342579 tagtaggattgacgacccaaa 10342599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 105 - 210
Target Start/End: Complemental strand, 25918673 - 25918568
Alignment:
Q  105 tatttcttgtgtccaatttaatttgttcttgtttgtgcttaatgctttttcaattgagaatccgtatcaataatcttaaaaatttatctttatagattag 204  Q
    ||||| ||||||||  ||||||| |||||||  |||||||||||||||||||||||||||||||||||  ||||||| |||||| |||  ||||||||||    
T  25918673 tattttttgtgtccgttttaattcgttcttgcctgtgcttaatgctttttcaattgagaatccgtatcggtaatcttgaaaattgatccgtatagattag 25918574  T
Q  205 taggat 210  Q
    | ||||    
T  25918573 tcggat 25918568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 103
Target Start/End: Complemental strand, 14280763 - 14280683
Alignment:
Q  23 caactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttatttagtt 103  Q
    |||||||||||||||||||| ||||| | ||||||| |||||||||||||||||| | |||||||||||||||||| ||||    
T  14280763 caactaaacctctttgattaaggttccacgatgaaccccttcttatttgttggattctattaataaagtttttattcagtt 14280683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 22 - 92
Target Start/End: Complemental strand, 2729070 - 2729000
Alignment:
Q  22 acaactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtt 92  Q
    |||||||||||||||||||||||||| ||||||||||||| | ||||||||||||| | ||||||||||||    
T  2729070 acaactaaacctctttgattagggttataagatgaactccattttatttgttggattcaattaataaagtt 2729000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 39 - 166
Target Start/End: Original strand, 16976897 - 16977026
Alignment:
Q  39 attagggttctaagatgaactccttcttatttgttggataccattaataaagtttttatttagttatattt--cttgtgtccaatttaatttgttcttgt 136  Q
    ||||||||||||| || ||  | |||||||||||||||| | ||||||||| |||| |||||||||| |||  ||||||||  ||||||||||| |||||    
T  16976897 attagggttctaacataaatccattcttatttgttggattcaattaataaatttttcatttagttatgtttttcttgtgtcttatttaatttgtacttgt 16976996  T
Q  137 ttgtgcttaatgctttttcaattgagaatc 166  Q
     ||| | |||| ||||||||||||||||||    
T  16976997 ctgttcataattctttttcaattgagaatc 16977026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 42 - 172
Target Start/End: Original strand, 13911950 - 13912086
Alignment:
Q  42 agggttctaagatgaactccttcttatttgttggataccattaataaagtttttatttagttata------tttcttgtgtccaatttaatttgttcttg 135  Q
    ||||||| ||||||||| | |||||||| | ||||| | |||||||||||||| ||||||||||       ||| |||||||||||||||||||| || |    
T  13911950 agggttccaagatgaaccctttcttattagctggattcaattaataaagttttcatttagttattctttttttttttgtgtccaatttaatttgtactag 13912049  T
Q  136 tttgtgcttaatgctttttcaattgagaatccgtatc 172  Q
    | |||  |||||| |||||||||| ||||||||||||    
T  13912050 tctgtttttaatggtttttcaatttagaatccgtatc 13912086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 105
Target Start/End: Original strand, 27415760 - 27415840
Alignment:
Q  24 aactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttatttagttat 105  Q
    ||||||||| ||| ||||||| ||||||||||||| |||||||||||||||||| | ||| |||||||||| ||| ||||||    
T  27415760 aactaaaccgcttcgattagg-ttctaagatgaaccccttcttatttgttggattcaatttataaagttttcattcagttat 27415840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 8401883 - 8401807
Alignment:
Q  18 atgtacaactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttt 94  Q
    |||| ||||||||| | ||| |||||||||| | ||||||| |||||||||||||||||| | ||||||||||||||    
T  8401883 atgtgcaactaaactttttttattagggttccacgatgaaccccttcttatttgttggattcaattaataaagtttt 8401807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 76
Target Start/End: Original strand, 21806121 - 21806195
Alignment:
Q  5 gatgtatgttgtaatgtacaactaaacctctttgattagggttctaagatgaac---tccttcttatttgttgga 76  Q
    |||||||||||| |||| |||||||||||||||| ||||||||||||||| |||    |||||||||||||||||    
T  21806121 gatgtatgttgtcatgtgcaactaaacctctttggttagggttctaagattaacccggccttcttatttgttgga 21806195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 24 - 95
Target Start/End: Complemental strand, 5632087 - 5632016
Alignment:
Q  24 aactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagttttt 95  Q
    |||||||| |||||||||||||||| | ||| ||| | |||||||||||||||| || ||||||||||||||    
T  5632087 aactaaacttctttgattagggttccacgataaaccctttcttatttgttggattccgttaataaagttttt 5632016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 98
Target Start/End: Complemental strand, 22488341 - 22488268
Alignment:
Q  24 aactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttatt 98  Q
    |||||||| |||| ||||| ||||| | ||||||||||||||||||| |||||| |||| |||||||||||||||    
T  22488341 aactaaacttcttcgattatggttccacgatgaactccttcttattt-ttggattccatgaataaagtttttatt 22488268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 103
Target Start/End: Original strand, 11475497 - 11475578
Alignment:
Q  23 caactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaag-tttttatttagtt 103  Q
    ||||||||||||| | |||||||||| | ||||||| |||| |||||| ||| || |||||||||||| |||||||||||||    
T  11475497 caactaaacctctctaattagggttccacgatgaaccccttgttattttttgtattccattaataaagttttttatttagtt 11475578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 98
Target Start/End: Complemental strand, 19542583 - 19542490
Alignment:
Q  5 gatgtatgttgtaatgtacaactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttatt 98  Q
    ||||| |||| | ||| ||||||||| ||||||||||||||||| | ||||||| |||| || ||||||||||   |||||||| |||||||||    
T  19542583 gatgtttgtttttatgaacaactaaatctctttgattagggttccacgatgaaccccttattttttgttggattgtattaataatgtttttatt 19542490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 100
Target Start/End: Complemental strand, 23907762 - 23907685
Alignment:
Q  24 aactaaacctcttt-gattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttattta 100  Q
    |||||||||||||| ||||||||||| | |||||||| || ||||||||||||||   ||||||||||||| ||||||    
T  23907762 aactaaacctcttttgattagggttcaacgatgaacttctacttatttgttggatttaattaataaagtttgtattta 23907685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 154
Target Start/End: Complemental strand, 33914075 - 33913943
Alignment:
Q  23 caactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttatttagttat--atttcttgtgtccaa 120  Q
    |||||||||||||| ||||||| ||  ||||||||| |||||||||||||| ||  | |||||||||||||| ||| |||| |   |||||||||| | |    
T  33914075 caactaaacctctt-gattaggctttcaagatgaac-ccttcttatttgttcgaatctattaataaagttttcattcagttttgcttttcttgtgttcta 33913978  T
Q  121 ttt-aatttgttcttgtttgtgcttaatgcttttt 154  Q
    ||| |||| ||| |||||||| |||||||||||||    
T  33913977 tttaaattagtttttgtttgttcttaatgcttttt 33913943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 26419385 - 26419471
Alignment:
Q  18 atgtacaactaaacctctttg-attagggttctaagatgaactccttcttatttgttggataccattaataaagtttttatttagtt 103  Q
    |||| ||||||||| |||||| |||| ||||| | ||||||| |||||||||||||||||| | ||||| |||||||| ||| ||||    
T  26419385 atgtgcaactaaacatctttgtattacggttccacgatgaaccccttcttatttgttggattcaattaaaaaagttttcattcagtt 26419471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 28731118 - 28731053
Alignment:
Q  5 gatgtatgttgtaatgtacaactaaacctctttgattagggttctaagatgaactccttcttattt 70  Q
    |||||||||||| ||||  | |||||||||||||||||||||||   ||||||| |||||||||||    
T  28731118 gatgtatgttgtcatgtgtagctaaacctctttgattagggttccgcgatgaaccccttcttattt 28731053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 103
Target Start/End: Original strand, 18474844 - 18474925
Alignment:
Q  23 caactaaacctctttgattagggttctaagatgaactcctt-cttatttgttggataccattaataaagtttttatttagtt 103  Q
    |||||||||||||||||||| ||||| | ||||||| ||||  || ||||||||||   |||||||| ||||||||| ||||    
T  18474844 caactaaacctctttgattatggttccacgatgaaccccttatttttttgttggattgtattaataatgtttttattcagtt 18474925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 98
Target Start/End: Original strand, 21018244 - 21018317
Alignment:
Q  26 ctaaacctctttgattagggttctaagat-gaactccttcttatttgttggataccattaataaagtttttatt 98  Q
    ||||||||||||||||||| |||||||||  || ||||| ||||||||||||  | || |||||||||| ||||    
T  21018244 ctaaacctctttgattaggtttctaagatataaatcctttttatttgttggactcaatcaataaagtttatatt 21018317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 21828678 - 21828593
Alignment:
Q  18 atgtacaactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttatttagtt 103  Q
    |||| |||||||||||||||||| | ||||| | |||||||  |||||||||| | |||| | ||||||||  |||||||| ||||    
T  21828678 atgtgcaactaaacctctttgatcaaggttccatgatgaacctcttcttatttttgggattcaattaataatttttttattcagtt 21828593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 102; Significance: 9e-51; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 5 - 231
Target Start/End: Complemental strand, 11984712 - 11984484
Alignment:
Q  5 gatgtatgttgtaatgtacaactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttatttagtta 104  Q
    |||||||||||  |||| |||||||||||||||||||||||||| ||||| ||| |||||||||||||||||| |||||||| ||||||||||| | |||    
T  11984712 gatgtatgttgccatgtgcaactaaacctctttgattagggttcaaagataaaccccttcttatttgttggattccattaattaagtttttattcattta 11984613  T
Q  105 --tatttcttgtgtccaatttaatttgttcttgtttgtgcttaatgctttttcaattgagaatccgtatcaataatcttaaaaatttatctttatagatt 202  Q
        |||||||||||  ||||||||||||||| |  |||||||||| |||||||||||| ||| |||||| |||||||| ||||||  ||| ||||||||    
T  11984612 cgcttttcttgtgtctgatttaatttgttcttttccgtgcttaatgttttttcaattgaaaattcgtatcgataatcttgaaaattggtctgtatagatt 11984513  T
Q  203 agtaggattaacgatccaaaattcttctt 231  Q
    ||||||||| || | || |||||||||||    
T  11984512 agtaggattgacaacccgaaattcttctt 11984484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 188
Target Start/End: Complemental strand, 11769480 - 11769310
Alignment:
Q  18 atgtacaactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttatttagtta-tatttcttgtgt 116  Q
    |||| ||||||||||| ||| |||||||||||||||||||| |||||||||||||||||| | ||||||||||||| |||| ||||| | ||||||||||    
T  11769480 atgtgcaactaaaccttttttattagggttctaagatgaaccccttcttatttgttggattcaattaataaagtttctattaagttattttttcttgtgt 11769381  T
Q  117 ccaatttaatttgttcttgtttgtgcttaatgctttttcaattgagaatccgtatcaataatcttaaaaatt 188  Q
    || ||||||||| ||||||| |||||||||||| |||||| |||||||| ||||||  ||||||| ||||||    
T  11769380 ccgatttaattttttcttgtctgtgcttaatgc-ttttcatttgagaattcgtatcggtaatcttgaaaatt 11769310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 23 - 198
Target Start/End: Original strand, 50047729 - 50047905
Alignment:
Q  23 caactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttatttagttat--atttcttgtgtccaa 120  Q
    ||||||||||||||||||||| ||| |||||||||| |||||||||||||||||| | ||||||||||||| |||||||||||   ||||||||| ||      
T  50047729 caactaaacctctttgattagagttataagatgaaccccttcttatttgttggattcaattaataaagtttctatttagttatgattttcttgtgcccgg 50047828  T
Q  121 tttaatttgttcttgtttgtgcttaatgctttttcaattgagaatccgtatcaataatcttaaaaatttatctttata 198  Q
    |||||||||||||||  ||||||||| | ||||||||||||||||  |||| | ||||||| |||||| |||| ||||    
T  50047829 tttaatttgttcttgcatgtgcttaa-gttttttcaattgagaatttgtattagtaatcttgaaaattgatctgtata 50047905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 5 - 141
Target Start/End: Original strand, 34533253 - 34533391
Alignment:
Q  5 gatgtatgttgtaatgtacaactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttatttagtta 104  Q
    ||||| ||| || |||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||| | ||||||||| ||| |||| |||||    
T  34533253 gatgtttgtcgtcatgtgcaactaaacctctttgattagggttctaagatggaccccttcttatttgttggattcaattaataaaatttatattcagtta 34533352  T
Q  105 t--atttcttgtgtccaatttaatttgttcttgtttgtg 141  Q
    |   |||||||||||| |||||||| ||||||| |||||    
T  34533353 tgcttttcttgtgtccgatttaattcgttcttgcttgtg 34533391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 24 - 188
Target Start/End: Complemental strand, 18300514 - 18300346
Alignment:
Q  24 aactaaacctctttgattagggttctaagatgaactccttcttatttgttggatacca-ttaataaagtttttatttagtta--tatttcttgtgtccaa 120  Q
    ||||||| ||||||| ||||||||||||||||||| ||||||||||||||| || | | ||||||||||||| ||| |||||  | ||||||| ||||||    
T  18300514 aactaaaactctttgcttagggttctaagatgaaccccttcttatttgttgaattcaatttaataaagttttcattcagttatgtttttcttgggtccaa 18300415  T
Q  121 ttt-aatttgttcttgtttgtgcttaatgctttttcaattgagaatccgtatcaataatcttaaaaatt 188  Q
    ||| |||| || ||||| ||| |||||||||||||||||| |||||| | ||| |||||||| ||||||    
T  18300414 tttaaattcgtacttgtatgttcttaatgctttttcaatttagaatctgcatcgataatcttgaaaatt 18300346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 5 - 211
Target Start/End: Original strand, 23223999 - 23224208
Alignment:
Q  5 gatgtatgttgtaatgtacaactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttatttagtta 104  Q
    |||||||||||| |||   || ||||||||||||||| |||||||||||||||| ||||||||| ||||| || |  |||||||||||| |||| |||||    
T  23223999 gatgtatgttgtcatgcggaaataaacctctttgatttgggttctaagatgaaccccttcttatatgttgcattcagttaataaagtttctattcagtta 23224098  T
Q  105 t--atttcttgtgtcc-aatttaatttgttcttgtttgtgcttaatgctttttcaattgagaatccgtatcaataatcttaaaaatttatctttatag-a 200  Q
    |   |||||||||||| ||||||| | |||||||| |||||||||   ||||| | ||||||||| ||||||  ||  || |||||| |||| ||||| |    
T  23224099 tgcttttcttgtgtccaaatttaaatagttcttgtctgtgcttaa-aattttttatttgagaatctgtatcagcaacattcaaaattgatctgtatagaa 23224197  T
Q  201 ttagtaggatt 211  Q
    |||||||||||    
T  23224198 ttagtaggatt 23224208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 23 - 89
Target Start/End: Complemental strand, 19257437 - 19257371
Alignment:
Q  23 caactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaa 89  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||||||||||| | |||||||||    
T  19257437 caactaaacctctttgattagggttccaagatgaaccccttcttatttgttggattcaattaataaa 19257371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 23 - 103
Target Start/End: Original strand, 12810800 - 12810879
Alignment:
Q  23 caactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttatttagtt 103  Q
    |||| ||||||||| ||||||||||| | |||||||||||||||||||||||||||  |||||||||||||| ||| ||||    
T  12810800 caacaaaacctctt-gattagggttccatgatgaactccttcttatttgttggatataattaataaagttttcattcagtt 12810879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 36 - 105
Target Start/End: Original strand, 30676079 - 30676148
Alignment:
Q  36 ttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttatttagttat 105  Q
    ||||||| ||||| ||||||||| |||||||||||||||||| | |||||||||||||| ||| ||||||    
T  30676079 ttgattaaggttcgaagatgaaccccttcttatttgttggattcaattaataaagttttcattcagttat 30676148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 95
Target Start/End: Complemental strand, 25665261 - 25665189
Alignment:
Q  23 caactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagttttt 95  Q
    |||||||||||||||||||| ||||| | ||||||| ||||||||||||||| || | ||| |||||||||||    
T  25665261 caactaaacctctttgattaaggttccacgatgaaccccttcttatttgttgaattctattgataaagttttt 25665189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 23521204 - 23521135
Alignment:
Q  25 actaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagttttt 95  Q
    |||||||||||| ||||||||||| |||||||||  |||||||||||||||||   |||||||||||||||    
T  23521204 actaaacctctt-gattagggttccaagatgaacctcttcttatttgttggatcttattaataaagttttt 23521135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 14744930 - 14744865
Alignment:
Q  12 gttgtaatgtacaactaaacctctttgattagggttctaagatgaactccttcttatttgttggat 77  Q
    ||||| |||| ||||||||||||||||| |||||||| ||||||||||  ||||||||| ||||||    
T  14744930 gttgtcatgtgcaactaaacctctttgactagggttccaagatgaactttttcttatttattggat 14744865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 140 - 188
Target Start/End: Original strand, 34521642 - 34521690
Alignment:
Q  140 tgcttaatgctttttcaattgagaatccgtatcaataatcttaaaaatt 188  Q
    |||||||||||||||||| |||||||||||||| |||||||| ||||||    
T  34521642 tgcttaatgctttttcaagtgagaatccgtatcgataatcttgaaaatt 34521690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 112
Target Start/End: Original strand, 30782307 - 30782411
Alignment:
Q  6 atgtatgttgtaatgtacaactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttatttagttat 105  Q
    ||||||||||| |||  ||||||||| |||| ||||| ||||| | ||||| | |||||||||||||||||    |||||||||||||||||| |||| |    
T  30782307 atgtatgttgtcatgagcaactaaacatctt-gattaaggttccaggatgagccccttcttatttgttggaatttattaataaagtttttattcagtt-t 30782404  T
Q  106 atttctt 112  Q
    |||||||    
T  30782405 atttctt 30782411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 95
Target Start/End: Original strand, 31314189 - 31314258
Alignment:
Q  27 taaacctct-ttgattagggttctaagatgaactccttcttatttgttggataccattaataaagttttt 95  Q
    ||||||||| ||||||||||||| ||||||| |  |||||| |||||||||| | |||||||||||||||    
T  31314189 taaacctctcttgattagggttccaagatgagcctcttcttgtttgttggattcaattaataaagttttt 31314258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 24903278 - 24903227
Alignment:
Q  24 aactaaacctctttgattagggttctaagatgaactccttcttatttgttgga 76  Q
    ||||||||||||| ||||||||||| | ||||||| |||||||||||||||||    
T  24903278 aactaaacctctt-gattagggttccatgatgaaccccttcttatttgttgga 24903227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 103
Target Start/End: Original strand, 21549304 - 21549367
Alignment:
Q  40 ttagggttctaagatgaactccttcttatttgttggataccattaataaagtttttatttagtt 103  Q
    ||||||||| | ||||||  |||||||||||||||||| | ||||||| |||||||||| ||||    
T  21549304 ttagggttccacgatgaaacccttcttatttgttggattctattaatacagtttttattcagtt 21549367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 98
Target Start/End: Complemental strand, 52270694 - 52270619
Alignment:
Q  24 aactaaacctctttgattagggttctaagatgaactcc-ttcttatttgttggataccattaataaagtttttatt 98  Q
    |||||||| | |||||||||||||| | ||||||| || ||||||||| |||||| |  |||||||||||||||||    
T  52270694 aactaaacttatttgattagggttccacgatgaacccccttcttattttttggattcttttaataaagtttttatt 52270619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 77
Target Start/End: Complemental strand, 9252138 - 9252085
Alignment:
Q  23 caactaaacctctttgattagggttctaagatgaactccttcttatttgttggat 77  Q
    |||||||||||||| |||| |||||  ||||||||| ||||||||||||||||||    
T  9252138 caactaaacctctt-gatttgggtttgaagatgaaccccttcttatttgttggat 9252085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 105
Target Start/End: Original strand, 9328638 - 9328718
Alignment:
Q  23 caactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttatttagttat 105  Q
    ||||||||||| |||||||| || || ||||||||| | |||||||||||||||| | ||||| |||||||| ||| ||||||    
T  9328638 caactaaacct-tttgattatggctcgaagatgaaccctttcttatttgttggattctattaa-aaagttttcattcagttat 9328718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 97
Target Start/End: Original strand, 25778387 - 25778421
Alignment:
Q  63 tcttatttgttggataccattaataaagtttttat 97  Q
    ||||||||||||||| |||||||||||||||||||    
T  25778387 tcttatttgttggattccattaataaagtttttat 25778421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 161
Target Start/End: Complemental strand, 17837355 - 17837314
Alignment:
Q  120 atttaatttgttcttgtttgtgcttaatgctttttcaattga 161  Q
    |||||||| |||||||  ||||||||||||||||||||||||    
T  17837355 atttaattcgttcttgcatgtgcttaatgctttttcaattga 17837314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 26853800 - 26853748
Alignment:
Q  18 atgtacaactaaacctctttgattagggttctaagatgaactccttcttattt 70  Q
    |||| ||| |||||||||||||||| ||||||| ||||||| |||| ||||||    
T  26853800 atgtgcaagtaaacctctttgattatggttctacgatgaacccctttttattt 26853748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 89; Significance: 5e-43; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 23 - 188
Target Start/End: Original strand, 24120897 - 24121063
Alignment:
Q  23 caactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttatttagttat--atttcttgtgtccaa 120  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||| |||| ||| ||||||  ||||||||||||  |    
T  24120897 caactaaacctctttgatcagggttccaagatgaactccttcttatttgttggattccattaataaaattttcattcagttatcaatttcttgtgtcaga 24120996  T
Q  121 tttaatttgttcttgtttgtgcttaatgctttttcaattgagaatccgtatcaataatcttaaaaatt 188  Q
    |||||||||| ||||  ||| ||||||| ||||||||||||||||| ||||| ||||| |||||||||    
T  24120997 tttaatttgtacttgcatgttcttaatgttttttcaattgagaatctgtatcgataat-ttaaaaatt 24121063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 23 - 188
Target Start/End: Original strand, 32239904 - 32240070
Alignment:
Q  23 caactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttatttagtta--tatttcttgtgtccaa 120  Q
    |||||||||||||| |||||||||| ||||||||||  ||||||||||||||||| | ||||||||||||| ||||   |||  | |||||||||| | |    
T  32239904 caactaaacctctt-gattagggttttaagatgaacctcttcttatttgttggattcaattaataaagtttatattcgattatgtttttcttgtgttcga 32240002  T
Q  121 tttaatttgttcttgtttgtgcttaatgctttttcaattgagaatccgtatcaataatcttaaaaatt 188  Q
     |||||| |||||||| | ||||||||||||||| |||||||||||||||||| ||||||| ||||||    
T  32240003 gttaattcgttcttgtctatgcttaatgcttttttaattgagaatccgtatcagtaatcttgaaaatt 32240070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 12957144 - 12957224
Alignment:
Q  18 atgtacaactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttatt 98  Q
    |||| |||||||||||||||||||||| |||||| |||||  ||||||||||||||||||  |||||||||||||| ||||    
T  12957144 atgtgcaactaaacctctttgattaggattctaaaatgaatgccttcttatttgttggatttcattaataaagtttgtatt 12957224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 157
Target Start/End: Original strand, 24094797 - 24094932
Alignment:
Q  23 caactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttatttagt-tatatttcttgtgtccaat 121  Q
    |||||||||||||| ||||| ||||||||||| ||  |||||||||||||||||| | ||||||||||| || ||| ||| |   ||||||||||| |||    
T  24094797 caactaaacctctt-gattacggttctaagattaatcccttcttatttgttggattcaattaataaagtcttcattcagtattcttttcttgtgtctaat 24094895  T
Q  122 tt-aatttgttcttgtttgtgcttaatgctttttcaa 157  Q
    || |||| |||||||| ||| ||||||||||||||||    
T  24094896 ttaaattagttcttgtctgttcttaatgctttttcaa 24094932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 62 - 161
Target Start/End: Complemental strand, 16051665 - 16051564
Alignment:
Q  62 ttcttatttgttggataccattaataaagtttttatttagttatattt--cttgtgtccaatttaatttgttcttgtttgtgcttaatgctttttcaatt 159  Q
    ||||||||  |||||| | ||||||||||||| |||||| ||||| ||  ||||||||| ||||||||||||||||  |||||||||| | |||||||||    
T  16051665 ttcttattgtttggattcgattaataaagtttctatttaattatactttgcttgtgtcctatttaatttgttcttgcatgtgcttaataccttttcaatt 16051566  T
Q  160 ga 161  Q
    ||    
T  16051565 ga 16051564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 109 - 210
Target Start/End: Complemental strand, 23951987 - 23951885
Alignment:
Q  109 tcttgtgtccaatttaatttgttcttgtttgtgcttaatgctttttcaattgagaatccgtatcaataatcttaaaaatttatcttta-tagattagtag 207  Q
    |||||||||||||||||||||| ||||  ||| ||| ||| ||||||||| |||||||||||||  ||||||| |||||| |||  || |||||||||||    
T  23951987 tcttgtgtccaatttaatttgtacttgcatgttcttgatgttttttcaatcgagaatccgtatcggtaatcttgaaaattgatccatagtagattagtag 23951888  T
Q  208 gat 210  Q
    |||    
T  23951887 gat 23951885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 30850538 - 30850451
Alignment:
Q  12 gttgtaatgtacaactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttattt 99  Q
    ||||| |||| |||||||||||||||||||| ||||  ||||||||||||||||||||| || ||| |  |||||||  |||||||||    
T  30850538 gttgtcatgtgcaactaaacctctttgattaaggtttcaagatgaactccttcttatttttttgattcatttaataatatttttattt 30850451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 95
Target Start/End: Original strand, 28075146 - 28075204
Alignment:
Q  37 tgattagggttctaagatgaactccttcttatttgttggataccattaataaagttttt 95  Q
    |||||||||||| | ||||||||||||||||||| |||||| | |||||||||||||||    
T  28075146 tgattagggttccacgatgaactccttcttatttattggattcaattaataaagttttt 28075204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 44 - 103
Target Start/End: Complemental strand, 11308285 - 11308225
Alignment:
Q  44 ggttctaagatgaactccttcttatttgttggataccattaataaagttttt-atttagtt 103  Q
    ||||| ||||||||| |||||||||||||||||||  ||||||||||||||| ||||||||    
T  11308285 ggttccaagatgaaccccttcttatttgttggatattattaataaagtttttcatttagtt 11308225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 95
Target Start/End: Original strand, 14184562 - 14184633
Alignment:
Q  24 aactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagttttt 95  Q
    |||||||||||||||||||| |||| |  |||| |  ||||||||||||||||| | |||||||||||||||    
T  14184562 aactaaacctctttgattagagttccactatgatcctcttcttatttgttggattcaattaataaagttttt 14184633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 99
Target Start/End: Original strand, 18771574 - 18771649
Alignment:
Q  24 aactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttattt 99  Q
    |||||| |||||||||||||| ||| | ||||||  |||||||||||||||||| |  ||||||||| ||||||||    
T  18771574 aactaatcctctttgattaggattccacgatgaagcccttcttatttgttggattcttttaataaagcttttattt 18771649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 23 - 89
Target Start/End: Original strand, 5154413 - 5154479
Alignment:
Q  23 caactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaa 89  Q
    ||||||||||| |||||||| ||||| | ||||||| |||| ||||||||||||| | |||||||||    
T  5154413 caactaaacctatttgattaaggttccacgatgaaccccttattatttgttggattcaattaataaa 5154479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 6887683 - 6887598
Alignment:
Q  18 atgtacaactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttatttagtt 103  Q
    |||| |||||||||||||||||||||||||| | ||||| |  |||| ||||||||| || | ||||||||| | |||||| ||||    
T  6887683 atgtgcaactaaacctctttgattagggttccacgatgatcctcttcatatttgttgaattcaattaataaattgtttattcagtt 6887598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 11438035 - 11438119
Alignment:
Q  18 atgtacaactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttatttagtt 103  Q
    |||| ||||||| | |||||||||||| ||  | ||||||| |||||||||||||||||| | ||||||||||| |||||| ||||    
T  11438035 atgtgcaactaagcatctttgattaggttta-acgatgaaccccttcttatttgttggattctattaataaagtatttattcagtt 11438119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 98
Target Start/End: Original strand, 23876585 - 23876657
Alignment:
Q  23 caactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttatt 98  Q
    |||||||||||||   ||||||| || ||||||||   ||||||||||||||||| | ||||||||||||||||||    
T  23876585 caactaaacctct---attagggctcgaagatgaatcacttcttatttgttggattcaattaataaagtttttatt 23876657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 95
Target Start/End: Complemental strand, 28260005 - 28259944
Alignment:
Q  34 ctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagttttt 95  Q
    ||||||||||||||||| |||||||  ||||||||||| | ||| | |||||||||||||||    
T  28260005 ctttgattagggttctaggatgaacctcttcttatttgatagattcaattaataaagttttt 28259944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 13305040 - 13305091
Alignment:
Q  23 caactaaacctctttgattagggttctaagatgaactccttcttatttgttgg 75  Q
    |||||||||||||| ||||||| ||||| ||||||| ||||||||||||||||    
T  13305040 caactaaacctctt-gattaggtttctacgatgaaccccttcttatttgttgg 13305091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 95
Target Start/End: Complemental strand, 27085045 - 27084973
Alignment:
Q  23 caactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagttttt 95  Q
    ||||||||||||||||||||||| |  | ||||||| | || ||||||||||||  | |||||||||||||||    
T  27085045 caactaaacctctttgattagggcttcacgatgaacccttttttatttgttggactcaattaataaagttttt 27084973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 103
Target Start/End: Complemental strand, 29046767 - 29046699
Alignment:
Q  35 tttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttatttagtt 103  Q
    |||||||||||||| | ||||||| |||||||||||||||||    |||||||||||||| ||| ||||    
T  29046767 tttgattagggttccacgatgaaccccttcttatttgttggaatttattaataaagttttcattcagtt 29046699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 94
Target Start/End: Complemental strand, 15213232 - 15213162
Alignment:
Q  23 caactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttt 94  Q
    ||||||||| |||| ||||| ||||||||||||||  ||||||||| |||||||| | ||||||||| ||||    
T  15213232 caactaaacatctt-gattatggttctaagatgaatcccttcttatctgttggattcaattaataaaatttt 15213162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 93
Target Start/End: Complemental strand, 24927313 - 24927258
Alignment:
Q  38 gattagggttctaagatgaactccttcttatttgttggataccattaataaagttt 93  Q
    |||| |||||||||||||||||  ||||||||| |||||| | |||||||||||||    
T  24927313 gatttgggttctaagatgaacttattcttattttttggattcaattaataaagttt 24927258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 12774342 - 12774265
Alignment:
Q  18 atgtacaactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagttttt 95  Q
    |||| |||||||||||||||||| | ||||| |||||||||   || ||||||||| ||| | |||| ||||||||||    
T  12774342 atgtgcaactaaacctctttgatcaaggttccaagatgaaccttttattatttgttagattcaattagtaaagttttt 12774265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 89
Target Start/End: Complemental strand, 28290852 - 28290776
Alignment:
Q  10 atgttgtaatgtacaactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaa 89  Q
    ||||||| |||| ||||||||||| ||  ||||||||| || ||||||| ||| |||||||||||||| | |||||||||    
T  28290852 atgttgtgatgtgcaactaaacctttt--attagggttatacgatgaac-cctacttatttgttggattcaattaataaa 28290776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 95
Target Start/End: Complemental strand, 28900797 - 28900727
Alignment:
Q  23 caactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagttttt 95  Q
    |||||||||||||| |||| || ||| | ||||||| ||||||||||||||| |||  |||||||||||||||    
T  28900797 caactaaacctctt-gattcgg-ttccacgatgaaccccttcttatttgttgaatattattaataaagttttt 28900727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 24 - 239
Target Start/End: Original strand, 23072960 - 23073178
Alignment:
Q  24 aactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagttttt-atttagttatattt--cttgtgtccaa 120  Q
    |||| ||||||||||||||||||||||| ||||||   |||||||||||||||| ||||||||||| ||||| ||  | |||| |||  ||||||||| |    
T  23072960 aacttaacctctttgattagggttctaaaatgaaccatttcttatttgttggattccattaataaatttttttatccaattatgtttttcttgtgtccga 23073059  T
Q  121 tttaatttgttcttgtttgtgcttaatgctttttcaattgagaatccgtatcaataatcttaaaaatttatctttatagattagtaggattaacgatcca 220  Q
    ||||||| | |||||  |||||||||||||||||||||||||||||| ||||  ||||||| |||||| ||  | |||||||||||||||| || | ||     
T  23073060 tttaattcgctcttgcatgtgcttaatgctttttcaattgagaatccttatcggtaatcttgaaaattgatactaatagattagtaggattgacaacccg 23073159  T
Q  221 aaattcttcttcggttcat 239  Q
    | |||||||||| ||||||    
T  23073160 acattcttcttctgttcat 23073178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 232
Target Start/End: Original strand, 3400463 - 3400681
Alignment:
Q  18 atgtacaactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttatttag----ttatatttcttg 113  Q
    |||| |||||||||||||||||||| ||||||||||||||| ||||||||||| |||||| | |||| |||||||||||||| |    || | |||||||    
T  3400463 atgtgcaactaaacctctttgattaaggttctaagatgaaccccttcttatttcttggattcgattagtaaagtttttattttgttttttttttttcttg 3400562  T
Q  114 tgtccaatttaatttgttcttgtttgtgcttaatgctttttcaattgagaatccgtatcaataatcttaaaaatttatctttatagattagtaggattaa 213  Q
    |  || || |||||||||||||  ||||||||| |||||||| ||||||||||| |||   ||||||| |||||| |||  |||| ||||||| |||| |    
T  3400563 tacccgatctaatttgttcttgcatgtgcttaacgctttttcgattgagaatccatattggtaatcttgaaaattgatccgtatatattagtaagattga 3400662  T
Q  214 cgatccaaaattcttcttc 232  Q
    | |  | ||||||||||||    
T  3400663 caactcgaaattcttcttc 3400681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 22 - 188
Target Start/End: Complemental strand, 20470249 - 20470082
Alignment:
Q  22 acaactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttatttagttatattt-cttgtgtccaa 120  Q
    ||||||||||| |||||||||||||| ||||||  |  |||| |||||| |||||| | | |||||| |||| |||| |||||| ||| ||||||| | |    
T  20470249 acaactaaaccactttgattagggttttaagatatagccctttttatttcttggattcaactaataatgtttatattaagttatgttttcttgtgttcga 20470150  T
Q  121 tttaatttgttcttgtttgtgcttaatgctttttcaattgagaatccgtatcaataatcttaaaaatt 188  Q
    ||||||| ||||||| ||||||||||||||||||||| ||||||||||||||  ||||||| ||||||    
T  20470149 tttaattcgttcttgcttgtgcttaatgctttttcaactgagaatccgtatcggtaatcttgaaaatt 20470082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 24 - 188
Target Start/End: Original strand, 23126764 - 23126930
Alignment:
Q  24 aactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttatttagttata--tttcttgtgtccaat 121  Q
    |||||| |||||||||||||||| ||||||||||| ||||||||||| |||||| | |||| |||  |||| ||| | |||||  |||||||||||||||    
T  23126764 aactaagcctctttgattagggt-ctaagatgaaccccttcttattttttggattcaattagtaacattttcattcatttatacttttcttgtgtccaat 23126862  T
Q  122 ttaattt-gttcttgtttgtgcttaatgctttttcaattgagaatccgtatcaataatcttaaaaatt 188  Q
    |||| || || ||||||||| |||||||||||||||||||| |||||| |||  ||||||| ||||||    
T  23126863 ttaaattcgtacttgtttgttcttaatgctttttcaattgaaaatccgcatcgctaatcttgaaaatt 23126930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 23 - 188
Target Start/End: Original strand, 20017622 - 20017789
Alignment:
Q  23 caactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttatttagtta--tatttcttgtgtccaa 120  Q
    ||||||||||| || ||||||||||||||||||||| | |||||||| ||||||| | ||| |||||||||| ||| |||||  | ||||||||||||||    
T  20017622 caactaaacctatt-gattagggttctaagatgaaccctttcttattggttggattcaattgataaagttttcattcagttatgtttttcttgtgtccaa 20017720  T
Q  121 ttt-aatttgttcttgtttgtgcttaatgctttttcaattgaga-atccgtatcaataatcttaaaaatt 188  Q
    ||| |||| |||||||| |||  ||||||||||||||| |||||  |||||| | |||||||||||||||    
T  20017721 tttaaattagttcttgtctgtttttaatgctttttcaaatgagatctccgtaac-ataatcttaaaaatt 20017789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 165
Target Start/End: Complemental strand, 21545336 - 21545187
Alignment:
Q  18 atgtacaactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttatttagttat-atttcttgtgt 116  Q
    |||| ||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||   ||||||||||||||  || | || |  ||||||||||    
T  21545336 atgtgcaagtaaacctctttgattaggcttctaagatgaaccccttcttatttgttggatttaattaataaagttttctttcaattgtgttttcttgtgt 21545237  T
Q  117 ccaattt-aatttgttcttgtttgtgcttaatgctttttcaattgagaat 165  Q
    |  |||| || | ||||||||||| |||||||| |||||||||| |||||    
T  21545236 ctgatttaaaatagttcttgtttgcgcttaatgatttttcaattaagaat 21545187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 21544366 - 21544290
Alignment:
Q  23 caactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttattt 99  Q
    ||||||||| |||||||||||||||| | ||||||| |||||||||||||||||| |||||| ||||||||||||||    
T  21544366 caactaaacttctttgattagggttccatgatgaaccccttcttatttgttggattccattactaaagtttttattt 21544290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 27 - 188
Target Start/End: Complemental strand, 20050446 - 20050287
Alignment:
Q  27 taaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttatttagttatatttcttgtgtccaatttaat 126  Q
    |||||||||| ||||||||||| |  |||||| |||||||||||||| ||| | | |||||||||||| ||| ||||||| |||| |||||| |||||||    
T  20050446 taaacctctt-gattagggttccactatgaaccccttcttatttgttagattcaactaataaagttttcattcagttata-ttctggtgtccgatttaat 20050349  T
Q  127 ttgttcttgtttgtgcttaatgctttttcaattgagaatccgtatcaataatcttaaaaatt 188  Q
    |||| ||||| ||| | ||||  |||||||||||| |||| ||||   ||||||| ||||||    
T  20050348 ttgtacttgtctgttcgtaattatttttcaattgaaaatctgtataggtaatcttgaaaatt 20050287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 98
Target Start/End: Original strand, 30406213 - 30406288
Alignment:
Q  23 caactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttatt 98  Q
    |||||||||||||||||||| ||||| | ||||||| |||||| ||||||||||| | ||||||||||||||||||    
T  30406213 caactaaacctctttgattatggttccacgatgaaccccttctcatttgttggattcaattaataaagtttttatt 30406288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 12 - 103
Target Start/End: Complemental strand, 5312263 - 5312171
Alignment:
Q  12 gttgtaatgtacaactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagttttt-atttagtt 103  Q
    ||||| |||| |||||||||||||||||||||| ||||| ||||||| | |||||||||||||||| | ||| ||||| ||||| ||||||||    
T  5312263 gttgtcatgtgcaactaaacctctttgattaggattctacgatgaacccattcttatttgttggattcaattgataaattttttcatttagtt 5312171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 22334776 - 22334704
Alignment:
Q  5 gatgtatgttgtaatgtacaactaaacctctttgattagggttctaagatgaactccttcttatttgttggat 77  Q
    |||||||||||| ||||||||| ||||||||||||||| ||||| | ||||||| ||||||| ||||||||||    
T  22334776 gatgtatgttgtcatgtacaacaaaacctctttgattatggttccacgatgaaccccttcttctttgttggat 22334704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 161
Target Start/End: Complemental strand, 20040293 - 20040161
Alignment:
Q  27 taaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttatttagttatatttcttgtgtccaatttaat 126  Q
    |||||||||| ||||||||||| |  |||||| |||||||||||||| ||| | | |||||||||||| ||| ||||||| |||| |||||| |||||||    
T  20040293 taaacctctt-gattagggttcaactatgaaccccttcttatttgttagattcaactaataaagttttcattcagttata-ttctggtgtccgatttaat 20040196  T
Q  127 ttgttcttgtttgtgcttaatgctttttcaattga 161  Q
    |||| || || ||| | ||||  ||||||||||||    
T  20040195 ttgtactagtctgttcgtaattatttttcaattga 20040161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 103
Target Start/End: Complemental strand, 21537022 - 21536942
Alignment:
Q  23 caactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttatttagtt 103  Q
    ||||||||| | |||||||||||||| |  ||||||||||||||||||| ||||| |||||| ||||||| ||||| ||||    
T  21537022 caactaaacttatttgattagggttccattatgaactccttcttatttgatggattccattactaaagttcttattcagtt 21536942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 103
Target Start/End: Complemental strand, 24596469 - 24596389
Alignment:
Q  23 caactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttatttagtt 103  Q
    |||| |||||||||| ||||| |||| | ||||||| | ||||||||||||| || | |||||||||||||||||||||||    
T  24596469 caaccaaacctctttaattagagttccacgatgaacccattcttatttgttgaattctattaataaagtttttatttagtt 24596389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 95
Target Start/End: Complemental strand, 26839675 - 26839604
Alignment:
Q  23 caactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagttttt 95  Q
    |||||||||||||| ||||| ||||| ||||||||| ||||||||||||||||||   |||||||||||||||    
T  26839675 caactaaacctctt-gattaaggttccaagatgaaccccttcttatttgttggattttattaataaagttttt 26839604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 103
Target Start/End: Complemental strand, 9405351 - 9405254
Alignment:
Q  5 gatgtatgttgtaatgtacaactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttatttagtt 103  Q
    |||||||||||  |||  ||||||||||||||  |||||||||| | ||||||| |||||||||||||||||||  |||| ||||||||| ||| ||||    
T  9405351 gatgtatgttgccatgagcaactaaacctctta-attagggttccatgatgaaccccttcttatttgttggatattattattaaagttttcattcagtt 9405254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 97
Target Start/End: Original strand, 9760743 - 9760815
Alignment:
Q  25 actaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttat 97  Q
    ||||||||||||||| ||||| |  | ||||||| |||||||||||||||||| |  ||||||||||||||||    
T  9760743 actaaacctctttgagtagggcttcacgatgaaccccttcttatttgttggattcttttaataaagtttttat 9760815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 2629999 - 2629947
Alignment:
Q  23 caactaaacctctttgattagggttctaagatgaactccttcttatttgttgga 76  Q
    |||||||||||||| ||||||||||| | ||||||| |||||||||||||||||    
T  2629999 caactaaacctctt-gattagggttccatgatgaaccccttcttatttgttgga 2629947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 103
Target Start/End: Original strand, 7142673 - 7142773
Alignment:
Q  6 atgtatgttgtaatgtacaactaaacctctttgattagggttctaagatgaac----tccttcttatttgttggataccattaataaagtttttatttag 101  Q
    ||||||||||  |||  |||||||||||||| ||| ||||||| |||||||||    || |||||||||||||||||  |||||||||||||| ||| ||    
T  7142673 atgtatgttgccatgagcaactaaacctctt-gataagggttccaagatgaacccattcattcttatttgttggatattattaataaagttttcattcag 7142771  T
Q  102 tt 103  Q
    ||    
T  7142772 tt 7142773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 94
Target Start/End: Original strand, 3094034 - 3094093
Alignment:
Q  35 tttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttt 94  Q
    ||||||||| |||||||| ||||  ||||||||| |||||||| | ||||||||||||||    
T  3094034 tttgattagagttctaagttgaatcccttcttatgtgttggattcaattaataaagtttt 3094093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 58
Target Start/End: Complemental strand, 4091961 - 4091926
Alignment:
Q  23 caactaaacctctttgattagggttctaagatgaac 58  Q
    ||||||||||||||||||||||||||||| ||||||    
T  4091961 caactaaacctctttgattagggttctaacatgaac 4091926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 88
Target Start/End: Original strand, 11082164 - 11082244
Alignment:
Q  5 gatgtatgttgtaatgtacaactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataa 88  Q
    ||||| |||||| ||||  | ||||||||||||||||||||||| | ||||||| |   |||||||||||||| | ||||||||    
T  11082164 gatgtgtgttgtcatgtgtagctaaacctctttgattagggttccacgatgaaccc---cttatttgttggattctattaataa 11082244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 103
Target Start/End: Complemental strand, 7326459 - 7326379
Alignment:
Q  24 aactaaacctct-ttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttatttagtt 103  Q
    |||||||||||| || |||||||||| | |||||||   | ||||||||||||||   ||||||||||||| |||||||||    
T  7326459 aactaaacctctctttattagggttccacgatgaacatgtacttatttgttggatttaattaataaagtttctatttagtt 7326379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 73
Target Start/End: Original strand, 7815930 - 7815997
Alignment:
Q  5 gatgtatgttgtaatgtacaactaaacctctttgattagggttctaagatgaactccttcttatttgtt 73  Q
    |||||||||||  |||  |||||||||||||| |||||| |||| ||||| ||| ||||||||||||||    
T  7815930 gatgtatgttgccatgagcaactaaacctctt-gattagcgttccaagataaaccccttcttatttgtt 7815997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 188
Target Start/End: Complemental strand, 17859959 - 17859787
Alignment:
Q  18 atgtacaactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttatttagttat--atttcttgtg 115  Q
    |||| |||||||| |||||||||||| |||| ||||||||| |||||||||||||||||| | |||||||||||||| |||  ||| |   |||||||||    
T  17859959 atgtgcaactaaaactctttgattagagttccaagatgaacaccttcttatttgttggattcaattaataaagttttaattatgttttgcttttcttgtg 17859860  T
Q  116 tccaatttaatttgttcttgtttgtgcttaatgctttttcaattgagaatccgtatcaataatcttaaaaatt 188  Q
    ||| ||||||||||| |||||||||  | |||| ||||||||||||||||| | |||  ||||||| ||||||    
T  17859859 tccgatttaatttgtacttgtttgttttgaatgatttttcaattgagaatctgcatcggtaatcttgaaaatt 17859787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 43 - 160
Target Start/End: Original strand, 16528297 - 16528416
Alignment:
Q  43 gggttctaagatgaactccttcttatttgttggataccattaataaagtttttatttagtta--tatttcttgtgtccaatttaatttgttcttgtttgt 140  Q
    |||||||||||||||| ||||||||||||||||||  |||||||||||||| |||| | |||  | |||||||||||  ||||||||||||||||  |||    
T  16528297 gggttctaagatgaaccccttcttatttgttggatttcattaataaagtttctattcaattatgtttttcttgtgtctgatttaatttgttcttgcctgt 16528396  T
Q  141 gcttaatgctttttcaattg 160  Q
    |||||||| |||||||||||    
T  16528397 gcttaatggtttttcaattg 16528416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 188
Target Start/End: Complemental strand, 19670087 - 19669921
Alignment:
Q  23 caactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttatttagttat--atttcttgtgtccaa 120  Q
    |||||||||||||||| ||||| ||||||||||||| |||| || |||||||||| | |||||||||||||| ||| | ||||   |||||| ||| | |    
T  19670087 caactaaacctctttgtttaggattctaagatgaac-ccttattttttgttggattcgattaataaagttttcattcaattatgattttcttatgttcga 19669989  T
Q  121 tttaatttgttcttgtttgtgcttaatgctttttcaattgagaatccgtatcaataatcttaaaaatt 188  Q
    ||||||| || ||||| |   ||||||||||||||||| ||||||||  |||| ||||||| ||||||    
T  19669988 tttaattcgtacttgtctaatcttaatgctttttcaatagagaatccacatcagtaatcttgaaaatt 19669921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 105
Target Start/End: Complemental strand, 30235863 - 30235763
Alignment:
Q  5 gatgtatgttgtaatgtacaactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttatttagtta 104  Q
    ||||||||||||  ||  |||||||||| ||||||| ||||||||||||||||||| ||||||||||||| || | ||||||||||||| |||| |||||    
T  30235863 gatgtatgttgtcttgagcaactaaaccactttgatcagggttctaagatgaactcattcttatttgttgaattctattaataaagtttatattaagtta 30235764  T
Q  105 t 105  Q
    |    
T  30235763 t 30235763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 232
Target Start/End: Complemental strand, 13723358 - 13723130
Alignment:
Q  5 gatgtatgttgtaatgtacaactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttatttagtta 104  Q
    ||||| |||||| |||| |||||||| |  ||||||| |||||||| ||||||  |  |||||||| |||||| | |||||| ||||||||||| |||||    
T  13723358 gatgtttgttgtcatgtgcaactaaatcaatttgatttgggttctacgatgaatccaatcttattttttggattctattaatgaagtttttattaagtta 13723259  T
Q  105 t--atttcttgtgtccaatttaatttgttcttgtttgtgcttaatgctttttcaattgagaatccgtatcaataatcttaaaaatttatctttatagatt 202  Q
    |   |||||||||||  | |||||| ||||||| || | |||||| |  |||||||||| |||| ||| || ||||||| |||||  |||  || | |||    
T  13723258 tcattttcttgtgtctga-ttaattcgttcttgctttttcttaatacgctttcaattgaaaatcagtaacagtaatcttgaaaatcgatccgtacaaatt 13723160  T
Q  203 agtaggattaacgatccaaaattcttcttc 232  Q
     ||||||||||| | |||||||||||||||    
T  13723159 tgtaggattaacaacccaaaattcttcttc 13723130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 77
Target Start/End: Complemental strand, 32929964 - 32929889
Alignment:
Q  3 acgatgtatgttgtaatgtacaactaaacctc-tttgattagggttctaagatgaactccttcttatttgttggat 77  Q
    ||||||| |||||| ||||||||||||||||| ||| |||| ||||| |||||||||| |||||||||| ||||||    
T  32929964 acgatgtttgttgtcatgtacaactaaacctcttttaattaaggttcaaagatgaacttcttcttatttcttggat 32929889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 24 - 95
Target Start/End: Complemental strand, 9396068 - 9395996
Alignment:
Q  24 aactaaacctct-ttgattagggttctaagatgaactccttcttatttgttggataccattaataaagttttt 95  Q
    |||||||||||| ||||||| ||||| |||||||||  ||||||| ||||||||| | |||||||||||||||    
T  9396068 aactaaacctctcttgattatggttccaagatgaacatcttcttaattgttggattcgattaataaagttttt 9395996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 95
Target Start/End: Original strand, 30756262 - 30756353
Alignment:
Q  5 gatgtatgttgtaatgtacaactaaacctct-ttgattagggttctaagatgaactccttcttatttgttggataccattaataaagttttt 95  Q
    |||||||||||| |||| ||||||||||| | ||||||||||||| ||||| |||   || |||||||||| || | |||||||||||||||    
T  30756262 gatgtatgttgtcatgtgcaactaaacctttcttgattagggttccaagataaacctatttttatttgttgtattcaattaataaagttttt 30756353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 76
Target Start/End: Complemental strand, 9725676 - 9725606
Alignment:
Q  5 gatgtatgttgtaatgtacaactaaacctctttgattagggttctaagatgaactccttcttatttgttgga 76  Q
    ||||| |||||| |||  ||| |||||||||| ||||||||||| | ||||||| |||||||||||||||||    
T  9725676 gatgtctgttgtcatgagcaattaaacctctt-gattagggttccacgatgaaccccttcttatttgttgga 9725606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 15319463 - 15319540
Alignment:
Q  18 atgtacaactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagttttt 95  Q
    |||| ||| ||||| | |||||||||||||| | ||| ||| |||||||| |||||||||   |||||||||||||||    
T  15319463 atgtccaattaaacttgtttgattagggttccatgattaaccccttcttacttgttggatttaattaataaagttttt 15319540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 103
Target Start/End: Original strand, 15370120 - 15370189
Alignment:
Q  35 tttgattagggttctaagatgaactccttcttatttgttggataccattaataaagttttt-atttagtt 103  Q
    |||||||| ||||| | ||| ||| ||||||||||||||||||   ||||||||||||||| ||||||||    
T  15370120 tttgattatggttccatgattaaccccttcttatttgttggatttaattaataaagtttttcatttagtt 15370189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 16440016 - 16440061
Alignment:
Q  50 aagatgaactccttcttatttgttggataccattaataaagttttt 95  Q
    |||||||||  ||||||||||||||||| | |||||||||||||||    
T  16440016 aagatgaacctcttcttatttgttggattcaattaataaagttttt 16440061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 103
Target Start/End: Original strand, 28178629 - 28178710
Alignment:
Q  23 caactaaacctctttgattagggttctaagatgaactccttcttatttgttggatacca-ttaataaagtttttatttagtt 103  Q
    ||||||||| | ||| |||||| ||| | ||||||  ||||||||||||||||||  || ||||||||||||||||| ||||    
T  28178629 caactaaactttttttattaggtttccacgatgaaacccttcttatttgttggatttcatttaataaagtttttattcagtt 28178710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 93
Target Start/End: Original strand, 22263029 - 22263089
Alignment:
Q  33 tctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagttt 93  Q
    |||||||||||||||| || |||||| | ||||||||||||| || | || ||||||||||    
T  22263029 tctttgattagggttccaatatgaaccctttcttatttgttgaattcaatgaataaagttt 22263089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 8 - 214
Target Start/End: Complemental strand, 16622127 - 16621917
Alignment:
Q  8 gtatgttgtaatgtacaactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttatttagtta--t 105  Q
    ||||||||| |||| ||||||||||||||| |||||||||| |||| |||| ||||||| ||||||||||  |||||||||||||| |||| |||||  |    
T  16622127 gtatgttgtcatgtgcaactaaacctctttaattagggttcgaagaagaac-ccttcttgtttgttggatttcattaataaagtttatattcagttatgt 16622029  T
Q  106 atttcttgtgtccaatttaatttg--ttcttgtttgtgcttaatgctttttcaattgagaatccgtatcaataatcttaaaaatttatctttatag-att 202  Q
     |||||||||||  |||||| |||  || || ||||||||||||||||||||||||||||||   ||||  ||  ||| |||||| |||| ||||| |||    
T  16622028 ttttcttgtgtctgatttaaattgtttttttttttgtgcttaatgctttttcaattgagaatttatatcggtatccttgaaaattgatctgtatagaatt 16621929  T
Q  203 agtaggattaac 214  Q
    ||||||||||||    
T  16621928 agtaggattaac 16621917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 23 - 188
Target Start/End: Complemental strand, 18451707 - 18451539
Alignment:
Q  23 caactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttatttagttatatttct--tgtgtccaa 120  Q
    ||||||||||||||| ||||||||  |||||||||| | |||||||||||||||| |  | ||||||||||| ||  ||||||  || |  | ||||| |    
T  18451707 caactaaacctctttaattagggtgataagatgaaccctttcttatttgttggattcagtcaataaagttttaatccagttatgcttttactatgtccga 18451608  T
Q  121 tttaattt-gttcttgtttgtgcttaatgctttttcaattgagaatccgtatcaataatcttaaaaatt 188  Q
    ||||| |  ||||||| ||||||||||||||||||||||| ||||| ||||||||||||||| ||||||    
T  18451607 tttaaataagttcttgcttgtgcttaatgctttttcaattaagaattcgtatcaataatcttgaaaatt 18451539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 29 - 188
Target Start/End: Original strand, 25681186 - 25681347
Alignment:
Q  29 aacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttatttagttata--tttcttgtgtccaatttaat 126  Q
    ||||||||||||||||||||||| | ||||  ||||| ||||||| ||| | |||||||||||||  ||  ||||||   |||||||||| | |||| ||    
T  25681186 aacctctttgattagggttctaatacgaacctcttctcatttgttcgattcaattaataaagtttccatccagttatgcttttcttgtgttcgattttat 25681285  T
Q  127 ttgttcttgtttgtgcttaatgctttttcaattgagaatccgtatcaataatcttaaaaatt 188  Q
    |||| ||||| ||| ||||||| | ||||||||||||||| |||||  ||||||||||||||    
T  25681286 ttgtacttgtctgttcttaatgttgtttcaattgagaatctgtatcggtaatcttaaaaatt 25681347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 19763370 - 19763285
Alignment:
Q  18 atgtacaactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagt-ttttatttagt 102  Q
    |||||||||||||||||||| ||||||||||   |||||||||||||||||||||||||| | ||||||||| | |||||||||||    
T  19763370 atgtacaactaaacctctttaattagggttccttgatgaactccttcttatttgttggattcaattaataaattattttatttagt 19763285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 171
Target Start/End: Complemental strand, 17381478 - 17381328
Alignment:
Q  23 caactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttatttagttata--tttcttgtgtccaa 120  Q
    ||||||||||||||| |||  | ||  ||||||||  |||||||||||||||||| | |||||||||||||| ||| |  |||   |||||||||||  |    
T  17381478 caactaaacctctttaatttagttttcaagatgaatcccttcttatttgttggattcaattaataaagttttcattcaaatatgcttttcttgtgtctga 17381379  T
Q  121 tttaatttgttcttgtttgtgcttaatgctttttcaattgagaatccgtat 171  Q
    |||||||||| ||||  ||| ||||||| |||||||||||||||| |||||    
T  17381378 tttaatttgtacttgcatgttcttaatgttttttcaattgagaattcgtat 17381328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 86
Target Start/End: Original strand, 20695252 - 20695333
Alignment:
Q  5 gatgtatgttgtaatgtacaactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaat 86  Q
    |||||||| ||  |||| |||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||  |||||||    
T  20695252 gatgtatgctgccatgtgcaactaaaactctttgattagggttctacgatgaaccccttcttatttgttggatttcattaat 20695333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 17028888 - 17028960
Alignment:
Q  5 gatgtatgttgtaatgtacaactaaacctctttgattagggttctaagatgaactccttcttatttgttggat 77  Q
    ||||||||||   |||| |||||||||||||||||| |||||||||||||||||  |||||||||||||||||    
T  17028888 gatgtatgttaccatgtgcaactaaacctctttgatcagggttctaagatgaacctcttcttatttgttggat 17028960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 98
Target Start/End: Complemental strand, 12265078 - 12265003
Alignment:
Q  23 caactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttatt 98  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||  ||||| |  |||||||||||| ||||    
T  12265078 caactaaacctctttgattagggttataagatgaaccccttcttatttaatggattctcttaataaagtttatatt 12265003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 103
Target Start/End: Complemental strand, 18281684 - 18281605
Alignment:
Q  24 aactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttatttagtt 103  Q
    |||||||||||||||||||| |||| | || ||||  ||||||||||||||||| | |||||||||| ||||||||||||    
T  18281684 aactaaacctctttgattagcgttccacgacgaaccacttcttatttgttggattctattaataaaggttttatttagtt 18281605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 8 - 103
Target Start/End: Original strand, 30791237 - 30791332
Alignment:
Q  8 gtatgttgtaatgtacaactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttatttagtt 103  Q
    ||||| ||| |||| |||||||||||||||||| ||||||| | ||  ||| ||||||||||| |||||| | |||||||||||||||||| ||||    
T  30791237 gtatgctgtcatgtgcaactaaacctctttgatcagggttccacgagaaaccccttcttattttttggattcaattaataaagtttttattcagtt 30791332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 20084132 - 20084191
Alignment:
Q  18 atgtacaactaaacctctttgattagggttctaagatgaactccttcttatttgttggat 77  Q
    |||| |||||||| ||||||||||||||||| | ||||||| ||||||||||||||||||    
T  20084132 atgtgcaactaaatctctttgattagggttccatgatgaaccccttcttatttgttggat 20084191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 103
Target Start/End: Original strand, 24842310 - 24842404
Alignment:
Q  9 tatgttgtaatgtacaactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagttttt-atttagtt 103  Q
    |||||||| ||| |||| ||||| |||| ||||||||||| ||||||||| |||||||||||| || |||  ||||||||||||||| ||||||||    
T  24842310 tatgttgtcatgaacaagtaaacatctt-gattagggttccaagatgaaccccttcttatttgatgaatattattaataaagtttttcatttagtt 24842404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 78
Target Start/End: Complemental strand, 7742370 - 7742305
Alignment:
Q  12 gttgtaatgtacaactaaacctctttgattagggttctaagatgaactccttcttatttgttggata 78  Q
    ||||| |||| ||||||||| ||||| |||||||||| ||||||||| |||||||||||||||||||    
T  7742370 gttgtcatgtgcaactaaacttctttaattagggttccaagatgaac-ccttcttatttgttggata 7742305  T

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Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 103
Target Start/End: Original strand, 24268732 - 24268810
Alignment:
Q  23 caactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttatttagtt 103  Q
    |||||||||||||| ||||||| ||| || |||||| |||||||||||||||||| |  ||||||||||||| ||||||||    
T  24268732 caactaaacctctt-gattaggattccaaaatgaac-ccttcttatttgttggattctgttaataaagttttcatttagtt 24268810  T

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Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 103
Target Start/End: Original strand, 24345362 - 24345440
Alignment:
Q  23 caactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttatttagtt 103  Q
    |||||||||||||| ||||||| ||| || |||||| |||||||||||||||||| |  ||||||||||||| ||||||||    
T  24345362 caactaaacctctt-gattaggattccaaaatgaac-ccttcttatttgttggattctgttaataaagttttcatttagtt 24345440  T

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Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 23 - 89
Target Start/End: Original strand, 20715221 - 20715286
Alignment:
Q  23 caactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaa 89  Q
    |||| ||||||||| ||||||||||  ||||||||||| |||||||||||||||||  |||||||||    
T  20715221 caaccaaacctctt-gattagggtttcaagatgaactctttcttatttgttggatattattaataaa 20715286  T

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Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 103
Target Start/End: Complemental strand, 26328467 - 26328387
Alignment:
Q  22 acaactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttatttagtt 103  Q
    ||||||||||||||| ||||| ||||  | ||||||| |||||||||||||||||||  || ||||||||||| ||| ||||    
T  26328467 acaactaaacctctt-gattaaggtttcatgatgaaccccttcttatttgttggatattataaataaagttttcattcagtt 26328387  T

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Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 188
Target Start/End: Complemental strand, 25594126 - 25593960
Alignment:
Q  24 aactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttatttagttata--tttcttgtgtccaat 121  Q
    |||||||||||||||||||||| | || |||||||| ||| |||||| ||||||    ||| ||||||||| ||| | || |   |||||||||||  ||    
T  25594126 aactaaacctctttgattagggatata-gatgaacttctttttatttattggattatgttattaaagttttcattcatttgtgattttcttgtgtcagat 25594028  T
Q  122 ttaa-tttgttcttgtttgtgcttaatgctttttcaattgagaatccgtatcaataatcttaaaaatt 188  Q
    |||| ||||| ||| | | | | |||||||||||||| |||||||| | |||| ||||||||||||||    
T  25594027 ttaaatttgtacttctcttttcctaatgctttttcaactgagaatctgcatcagtaatcttaaaaatt 25593960  T

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Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 24517759 - 24517818
Alignment:
Q  18 atgtacaactaaacctctttgattagggttctaagatgaactccttcttatttgttggat 77  Q
    |||| ||| ||||||||||| ||||||||| ||||||||||   ||||||||||||||||    
T  24517759 atgtgcaattaaacctcttttattagggttttaagatgaacctattcttatttgttggat 24517818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 25945873 - 25945924
Alignment:
Q  18 atgtacaactaaacctctttgattagggttctaagatgaactccttcttatt 69  Q
    |||||||||||| ||| |||||||| |||||||||||||||  |||||||||    
T  25945873 atgtacaactaagcctatttgattaaggttctaagatgaacctcttcttatt 25945924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 24131270 - 24131336
Alignment:
Q  24 aactaaacctct-ttgattagggttctaagatgaactccttcttatttgttggataccattaataaa 89  Q
    |||||||||||| |||||| |||||| |||||||||  ||| ||||||||||||| | |||||||||    
T  24131270 aactaaacctctcttgattggggttccaagatgaacctcttattatttgttggattcaattaataaa 24131336  T

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Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 31267705 - 31267659
Alignment:
Q  24 aactaaacctctttgattagggttctaagatgaactccttcttattt 70  Q
    |||||||| |||||||||||||||| | ||||||| |||||||||||    
T  31267705 aactaaacatctttgattagggttccacgatgaaccccttcttattt 31267659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 27 - 166
Target Start/End: Original strand, 6793 - 6934
Alignment:
Q  27 taaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttatttagttat--atttcttgtgtccaattta 124  Q
    |||| |||||||||||||| |||||||||||| |||||||||||||||||| | |||||||||  ||| ||| | ||||   |||||| |||||||||||    
T  6793 taaaactctttgattagggctctaagatgaaccccttcttatttgttggattcaattaataaatatttcattcaattatgcttttcttatgtccaattta 6892  T
Q  125 atttgttcttgtttgtgcttaatgctttttcaattgagaatc 166  Q
    ||| |||||||  || ||||||||||||||||||||| ||||    
T  6893 attcgttcttgcctgcgcttaatgctttttcaattgaaaatc 6934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 32 - 232
Target Start/End: Original strand, 21972 - 22174
Alignment:
Q  32 ctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttatttagttat--atttcttgtgtccaatttaatttg 129  Q
    |||||||||||  |||||||||||||| |||||| ||||||||||| |||||||||||||||||||| | ||||   |||||||||| | | |||||| |    
T  21972 ctctttgattatagttctaagatgaaccccttctaatttgttggattccattaataaagtttttattcaattatgcttttcttgtgttcgagttaattcg 22071  T
Q  130 ttcttgtttgtgcttaatgctttttcaattgagaatccgtatcaataatcttaaaaatttatctttatagattagtaggattaacgatccaaaattcttc 229  Q
    | ||||   ||| ||||| ||||| |||||||||||  ||||| |||||||| |||||| |||  |||||||| || ||||| || | || ||||| |||    
T  22072 tccttgcccgtgattaatacttttccaattgagaatttgtatcgataatctttaaaattgatccgtatagattggtgggattgacaacccgaaattattc 22171  T
Q  230 ttc 232  Q
    |||    
T  22172 ttc 22174  T

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Target: scaffold0022 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 45 - 211
Target Start/End: Complemental strand, 68988 - 68820
Alignment:
Q  45 gttctaagatgaactccttcttatttgttggataccattaataaagtttttatttagttata--tttcttgtgtccaatttaatttgttcttgtttgtgc 142  Q
    ||||||||||||||  |||||||||||||  ||  | |||||||| |||||||| | ||||   |||||||||||| |||||||| |||||||| | |||    
T  68988 gttctaagatgaaccacttcttatttgttaaatttcgttaataaactttttattaaattatgattttcttgtgtccgatttaattcgttcttgtctatgc 68889  T
Q  143 ttaatgctttttcaattgagaatccgtatcaataatcttaaaaatttatctttatagattagtaggatt 211  Q
    ||||||| |||||||||||||||| |||||  | ||| | |||||| |||| ||||| |||||||||||    
T  68888 ttaatgccttttcaattgagaatctgtatcggtgatcgtgaaaattgatctgtataggttagtaggatt 68820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 97
Target Start/End: Complemental strand, 33217 - 33144
Alignment:
Q  24 aactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagtttttat 97  Q
    |||||| |||||||||||||||||| | ||||||  |||||||||||||||||| |  ||||||||||||||||    
T  33217 aactaatcctctttgattagggttccatgatgaagcccttcttatttgttggattcttttaataaagtttttat 33144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 77
Target Start/End: Complemental strand, 11254 - 11180
Alignment:
Q  3 acgatgtatgttgtaatgtacaactaaacctctttgattagggttctaagatgaactccttcttatttgttggat 77  Q
    ||||||||||||   |||| || |||||||||||||||||||||||||||| ||||   ||||||||| ||||||    
T  11254 acgatgtatgtttccatgtgcacctaaacctctttgattagggttctaagaagaacctattcttattttttggat 11180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 8209 - 8148
Alignment:
Q  18 atgtacaactaaacctctttgattagggttctaagatgaactccttcttatttgttggatac 79  Q
    |||| ||||||||||| |||||||||||||| |||| ||||  |||||||||| ||||||||    
T  8209 atgtgcaactaaacctatttgattagggttcgaagaagaacctcttcttattttttggatac 8148  T

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Target: scaffold0282 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0282
Description:

Target: scaffold0282; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 95
Target Start/End: Complemental strand, 22106 - 22021
Alignment:
Q  9 tatgttgtaatgtacaactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagttttt 95  Q
    |||||||  ||| ||||||||||||||| ||| | ||||| | ||||||| || ||||||||||||||||  |||||||||||||||    
T  22106 tatgttgccatgaacaactaaacctctt-gatcatggttccatgatgaaccccatcttatttgttggatattattaataaagttttt 22021  T

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Target: scaffold0337 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 3787 - 3855
Alignment:
Q  23 caactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagt 91  Q
    |||| |||| |||||| ||| ||||| |||||||||  ||||||||||||||||| ||||||| |||||    
T  3787 caaccaaacttctttgtttatggttccaagatgaacctcttcttatttgttggattccattaacaaagt 3855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0624 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0624
Description:

Target: scaffold0624; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 93
Target Start/End: Complemental strand, 4677 - 4607
Alignment:
Q  22 acaactaaacctctttgattagggttctaagatgaactccttcttatttgttggataccattaataaagttt 93  Q
    |||||||||||| |||||||||| |||||||||||||   ||||||||||||| ||   |||||||||||||    
T  4677 acaactaaacctttttgattagg-ttctaagatgaaccatttcttatttgttgaattttattaataaagttt 4607  T

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Target: scaffold0362 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0362
Description:

Target: scaffold0362; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 8298 - 8348
Alignment:
Q  23 caactaaacctctttgattagggttctaagatgaactccttcttatttgttg 74  Q
    ||||||||||||||  |||||||||| ||||||||| |||||||||||||||    
T  8298 caactaaacctctta-attagggttccaagatgaaccccttcttatttgttg 8348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0855 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0855
Description:

Target: scaffold0855; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 2495 - 2443
Alignment:
Q  23 caactaaacctctttgattagggttctaagatgaactccttcttatttgttgga 76  Q
    |||||||||||||| ||||||||||| |  |||||| |||||||||||||||||    
T  2495 caactaaacctctt-gattagggttccacaatgaaccccttcttatttgttgga 2443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0847 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0847
Description:

Target: scaffold0847; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 2660 - 2608
Alignment:
Q  23 caactaaacctctttgattagggttctaagatgaactccttcttatttgttgga 76  Q
    |||||||||||||| ||||||||||| |  |||||| |||||||||||||||||    
T  2660 caactaaacctctt-gattagggttccacaatgaaccccttcttatttgttgga 2608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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