View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7447_low_20 (Length: 215)
Name: NF7447_low_20
Description: NF7447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7447_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 16 - 202
Target Start/End: Original strand, 34681489 - 34681675
Alignment:
| Q |
16 |
atatccttttcaattgtgctgttttatggtcgatttggagtgagtcgttgaaatggctcggtgtttcggctgtttttgttgaaggaggatttgagcgtct |
115 |
Q |
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| T |
34681489 |
atatcctttttaatcgtgctgttttatggtcgatttggagtgagtcgttgaaatggctcggtgttttggctgtttttgttgaaggaggatttgagcgtct |
34681588 |
T |
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| Q |
116 |
cattttgttcaaaggtctagttgcaggaggtaaaaccgtctgtgagaggttgggagtgatattggtctccattatctcttccatttg |
202 |
Q |
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| T |
34681589 |
cattttgttcaaaggtctagttgcaggaggtaaaaccgtttgtgagaggttgggagtgatattggtctccattatctcttccatttg |
34681675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 22 - 199
Target Start/End: Original strand, 10831172 - 10831349
Alignment:
| Q |
22 |
ttttcaattgtgctgttttatggtcgatttggagtgagtcgttgaaatggctcggtgtttcggctgtttttgttgaaggaggatttgagcgtctcatttt |
121 |
Q |
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| T |
10831172 |
tttttaattgtgctattttgtcgatgatttggcgcgagtcgttgaagtagctcggtgtttcaggtgtttttgttgaagggggatttgagcatctaaattt |
10831271 |
T |
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| Q |
122 |
gttcaaaggtctagttgcaggaggtaaaaccgtctgtgagaggttgggagtgatattggtctccattatctcttccat |
199 |
Q |
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| T |
10831272 |
gttcaaaggtttggttgctggaggtaaaaacgttcttgagaggctgggtgtaatctaggtctcaattatctcttccat |
10831349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 40754678 - 40754714
Alignment:
| Q |
45 |
tcgatttggagtgagtcgttgaaatggctcggtgttt |
81 |
Q |
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| T |
40754678 |
tcgatttggagtgagacgttgaaatggctcggagttt |
40754714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 33598949 - 33598897
Alignment:
| Q |
16 |
atatccttttcaattgtgctgttttatggtcgatttggagtgagtcgttgaaa |
68 |
Q |
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| T |
33598949 |
atatcttttttaattgttctattttatcgtcaatttggagtgagtcgttgaaa |
33598897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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